mRNA_H-canaliculatus_F_contig14169.3283.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14169.3283.1
Unique NamemRNA_H-canaliculatus_F_contig14169.3283.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14169.3283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14169contigH-canaliculatus_F_contig14169:1177..2559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size196
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.2464077-CDS-H-canaliculatus_F_contig14169:1176..12871622929166.2464077-CDS-H-canaliculatus_F_contig14169:1176..1287Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14169 1177..1287 +
1696845702.5184047-CDS-H-canaliculatus_F_contig14169:1176..12871696845702.5184047-CDS-H-canaliculatus_F_contig14169:1176..1287Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14169 1177..1287 +
1622929166.2600663-CDS-H-canaliculatus_F_contig14169:2475..25591622929166.2600663-CDS-H-canaliculatus_F_contig14169:2475..2559Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14169 2476..2559 +
1696845702.5281553-CDS-H-canaliculatus_F_contig14169:2475..25591696845702.5281553-CDS-H-canaliculatus_F_contig14169:2475..2559Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14169 2476..2559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14169.3283.1prot_H-canaliculatus_F_contig14169.3283.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14169 1177..2559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14169.3283.1

>prot_H-canaliculatus_F_contig14169.3283.1 ID=prot_H-canaliculatus_F_contig14169.3283.1|Name=mRNA_H-canaliculatus_F_contig14169.3283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
MSPDQRHLCLLHPGDGSRGGAHTLPSLCSSSPHSPGRGMEPEGAPVGELR
DVVDADADPVGLTSP
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mRNA from alignment at H-canaliculatus_F_contig14169:1177..2559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14169.3283.1 ID=mRNA_H-canaliculatus_F_contig14169.3283.1|Name=mRNA_H-canaliculatus_F_contig14169.3283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1383bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14169:1177..2559+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGTCCAGATCAGCGACACCTGTGCTTGCTCCACCCCGGGGATGGGTC
GCGGGGTGGAGCACATACACTCCCCTCGCTGTGCTCCAGTTCACCCCATA
GCCCCGGACGGGTGGGTTGTCTCTAGCCTACGTAGTCTTCCTTGTCTCAG
TGAATATGGAGATCAAAAGAGGGTCGAAATCCGTCATCTGTGGGTAGAGC
GAGGTCATTTTCATTATGTCGAAAGTTGATCCTGCACGTGGTCAGCAGCT
CGACAGCTCAAAAAGCAAGTGCTGTCTCTATCGACTTTTTCCTCGTGGAT
TTTGAAATCCTGCATTATAAATAGAAAGAGTTTTCAACACCAAACGAAAA
CCCTCCGATGAGTCCAAATGATAGCGACTCAGGAGTAGTCAAGAGTTTCG
ATTAATTTATTACAGTTAGTGTTCAGTATTCAGTATACTGTTGTGGGGTT
CAGTTTTCTGTATATTGCTGTATTGTTCCAACTAAGTTTTTTTTATGTAC
GAGTAACCTCTACCCTTCTGAGGAGAAAACTCGCACGCAAACGCCCCCAT
AATTTTCCAAGCGGGCCTGGTGCGCACATGCATGGGATGCTATAAGGGTG
CTTGAGGGACGTACCACACAGGAACAGGGCCTTTAAATGAACACGACTCC
TGCACTAAAACACTCCGTACATAAGGTCATTTTAGCTCAACGCAGAGGAT
CCTACTCGTGATGTTGAACATTAACATTTCTTAGATAAAGCACAGACCAT
ACGGTTAAAGACAAGTCGACTAAAACACGTTTCATCCATCCTCCCAAGGA
TTCTGTCGGGTTGTTAGGGTCACGGATAGTTTGCTTCGAACTAGGACGCG
TGTGGAGGATTAGGATGCCCTATACTAGCGATAGGGTTCCAATTTCGTCG
GCCGTTGGCACCCTGGTATAAAGATACAGCCCATGTCATGAGACTACCTT
GGTGACATAATATATCACCCGCGAACCCCCTTATGGTTAGGCTCCACGGT
GCCTGCGACGCGTCTGGGCCCGAATTTTAGGACCTTGCGTCTTAGGCTAG
AACTACCGGAGAGGTCCAATGTGGAGAGTAAATAGGGGTGAGAATAGTGT
GTGGTGGCCTACCTAGTGCCTGCCAGCAGTGGGCTCCCTTCAGGGCCGAG
CGAGTACGTACTACAGGATCGTCCTCCTTCTCCACTAGGTATTCAAAACT
GACAATCAGACCTTTCAAGCATCACGTCATGTAAGGCTTGGGTCAACCAC
CTCTTACCAATGCCCCGCCGTTCCGTTTACAACTGGGCATGTCTCGCAGG
GGATGGAGCCAGAGGGTGCTCCGGTTGGTGAGCTGAGGGACGTCGTGGAT
GCCGATGCAGACCCGGTGGGACTGACGTCGCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14169:1177..2559+

>mRNA_H-canaliculatus_F_contig14169.3283.1 ID=mRNA_H-canaliculatus_F_contig14169.3283.1|Name=mRNA_H-canaliculatus_F_contig14169.3283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14169:1177..2559+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGTCCAGATCAGCGACACCTGTGCTTGCTCCACCCCGGGGATGGGTC
GCGGGGTGGAGCACATACACTCCCCTCGCTGTGCTCCAGTTCACCCCATA
GCCCCGGACGGATGAGTCCAGATCAGCGACACCTGTGCTTGCTCCACCCC
GGGGATGGGTCGCGGGGTGGAGCACATACACTCCCCTCGCTGTGCTCCAG
TTCACCCCATAGCCCCGGACGGGGGATGGAGCCAGAGGGTGCTCCGGTTG
GTGAGCTGAGGGACGTCGTGGATGCCGATGCAGACCCGGTGGGACTGACG
TCGCCAGGGATGGAGCCAGAGGGTGCTCCGGTTGGTGAGCTGAGGGACGT
CGTGGATGCCGATGCAGACCCGGTGGGACTGACGTCGCCA
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