mRNA_H-canaliculatus_F_contig14166.3282.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14166.3282.1
Unique NamemRNA_H-canaliculatus_F_contig14166.3282.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14166.3282.1 vs. uniprot
Match: A0A6H5JS12_9PHAE (EH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS12_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.390e-9
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:  832 SASRYLCRRYRLGEGIPSMLEAWMIPPSLRGTRGFEANNPSSANP 966
            S + YLCRR RLGEG+PSMLEAWMIPPSLR  RG   N PS A P
Sbjct:  376 SLAMYLCRRQRLGEGVPSMLEAWMIPPSLREARGCRDNGPSPAYP 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14166.3282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS12_9PHAE7.390e-971.11EH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14166contigH-canaliculatus_F_contig14166:144..2697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2554
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14166.3282.1prot_H-canaliculatus_F_contig14166.3282.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14166 516..1115 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.1728668-UTR-H-canaliculatus_F_contig14166:143..5151622929166.1728668-UTR-H-canaliculatus_F_contig14166:143..515Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14166 144..515 +
1696845702.4844162-UTR-H-canaliculatus_F_contig14166:143..5151696845702.4844162-UTR-H-canaliculatus_F_contig14166:143..515Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14166 144..515 +
1622929166.2013788-UTR-H-canaliculatus_F_contig14166:1115..26971622929166.2013788-UTR-H-canaliculatus_F_contig14166:1115..2697Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14166 1116..2697 +
1696845702.5090744-UTR-H-canaliculatus_F_contig14166:1115..26971696845702.5090744-UTR-H-canaliculatus_F_contig14166:1115..2697Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14166 1116..2697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.1906543-CDS-H-canaliculatus_F_contig14166:515..11151622929166.1906543-CDS-H-canaliculatus_F_contig14166:515..1115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14166 516..1115 +
1696845702.4997244-CDS-H-canaliculatus_F_contig14166:515..11151696845702.4997244-CDS-H-canaliculatus_F_contig14166:515..1115Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14166 516..1115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14166.3282.1

>prot_H-canaliculatus_F_contig14166.3282.1 ID=prot_H-canaliculatus_F_contig14166.3282.1|Name=mRNA_H-canaliculatus_F_contig14166.3282.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=200bp
MRLPAGSALTAVPVNDKAGGSTWTTVSSFCRVRVPPNLLKVPPSTTDRFA
SLPSVLAVGESMRLVPVAVAFDAARGALPSGPYDWPGRRRGPFEVADMGS
PSTGVQPVMMQLAFCPALLAPCECIPPLSYTRPLLRLLLLSPPPQLWPLP
FVTSASRYLCRRYRLGEGIPSMLEAWMIPPSLRGTRGFEANNPSSANPL*
back to top

mRNA from alignment at H-canaliculatus_F_contig14166:144..2697+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14166.3282.1 ID=mRNA_H-canaliculatus_F_contig14166.3282.1|Name=mRNA_H-canaliculatus_F_contig14166.3282.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2554bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14166:144..2697+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGTGGTGGTTACGGCTTGGTTCGTCGAAGGCGGAAGGTTCTACTCGTA
TGCAGCGTCCACGTGCAGTCGCTGCTGTGCTTTCATGCCTCTCGCCGGAA
GCTCTCGGGCGAGAAGCTCTCGGCGGGGCTTGGTGCCGGCGTCCGCACCG
GCAACGCAGTGGTCGGGAGCGCTGCGTCTTTAGACGAAAGACCGGAGAAT
AAAAGCGTGGTGTGAAGTTACCCCTCCGAAGCGGCAACCAAGGCTGTTGG
GACTGTCGAGGGAGCCGGCAGGCGTTTCGTTTCTCTTCGCACTTGAAACC
GTGCGCGGCCGGCGGTTCGATGTGGAAACCCGTCTTCGTTTCGCGCGAGT
TTCTCTCGGGGGGTGACGAGGGATGCGCCTTCCTGCAGGGTCGGCGTTGA
CGGCCGTCCCTGTCAACGATAAGGCCGGTGGCAGCACGTGGACAACTGTG
TCTTCGTTCTGTCGAGTAAGAGTCCCACCAAATCTCCTAAAAGTGCCACC
AAGTACCACCGATCGGTTCGCATCCCTGCCGAGCGTGCTCGCCGTGGGGG
AATCGATGCGTCTAGTCCCTGTCGCTGTGGCCTTTGATGCGGCGAGGGGT
GCGCTCCCCTCGGGGCCGTATGATTGGCCTGGCCGGCGGCGAGGCCCGTT
TGAGGTTGCGGATATGGGCAGTCCGTCTACCGGCGTCCAGCCTGTGATGA
TGCAGCTTGCATTTTGTCCCGCCCTGCTTGCGCCGTGCGAGTGTATTCCG
CCCTTGAGTTACACACGGCCGCTCCTGCGACTTCTTCTGCTGTCCCCGCC
CCCACAACTCTGGCCTCTGCCCTTCGTGACGTCGGCTTCCAGGTACCTTT
GCCGACGGTACCGTCTGGGCGAGGGTATCCCGTCGATGCTGGAGGCGTGG
ATGATACCGCCGAGCCTCCGCGGAACCCGGGGATTCGAGGCCAACAACCC
CTCCAGCGCAAACCCGCTGTGACACCGGAGCGGAGCGGAAGGGCGAGCCA
GAGAGATGGTGCGCAAGAGCGAGAGGACGTGAAGAGCGCTCCGGATGCGG
GGGGCGGAGAAAATAGGGTGATGCCAGAGCTGAAGACAGAACGCGAGGTG
TGGGGTGGGGGGTGGGTTGGCACGAGAAAGTCGACGGAATTGGCGGGCAG
CCGCGGGACGGATAGAGGTGGTGAGGTCCCGCCCGAACGCGCGCGCTGCG
TGTTGCTCTCTCGCGCCCTTCTTCCTGGTCCGGCGGGAAAGACAAGTTGG
TTTTTCTCGGGGTGGGGAAGCGTCACCATTTCCGCCGCGTCTTTCCGAGT
GGAATCGGCTCGGTTAGACCCCGCGCGACAAACCAGTCGATCGCCTCGCT
ACAGCAAGAGGGGCAAACACGCCCGCTGCAATATTTAATTTGGTAAAGCG
GTTTGCGCTCCCTCCGCTTCTCTTATTCCGTATTCCACCGCCCGGTATAT
AATCTCTTGAGCAAATCAAGCATAAAATCGCTATGCTAGCGTTGTTACTG
TAAATGTACAGATTACCGGGAGGGGCGGGCAGTGACGGTGGGTCAGCAAC
TCTTGGGGACTCAGCGGACTGCCTGAATGGGTTTGTTGTTCTCGTTGTGG
ATCGTGCCTGCAGGAGAAGCGCTCGCCTGGGTCGCATCGTGTAGTGAGAG
CTGTTAGCCTAGCCGTTCCCGCGAGTTCGTTGTTTGGTGGCGACTCTCTG
TTTTTTTCACGAGAGTGACGAGGCAGGCACGGTAGGTCTGAGTTTGCCCG
AGCACGCGGGACGGGCCGGTTGTCGACCTTTCTCTACAACCCGACTTTGT
TTTCGAGGCACGTGTGGAATCGGTTTTCCGCCGATGCAGTGTATACTAAA
ATAGCAGAGCTCTCAGAGATTGTGGACTGCGCCTGAGCCGCGACAGACAG
TGGTGGTATCGTTTCGAAGGGGCGGCGGGGAGGGAGGGGCAGAAGGCTGA
GCTTTGTTGTGTCCCGGTGGCTTTGGAGTATGGGGCAATGACGCTGGGTT
TGGGGTGACTCGCCAGACGCTGCGCTGCCACCTGGATACTGTAGAGAGAA
TGCGCAGGGGACTTTTGAAAGTCGGAACCCCGCACCCGTTGTTTAAAGTG
TAATGAAGAGAAGGTTAAGGTCCAGGTAAAGTGTGTTTTGTGATCAAGCA
CGATGTGTTACGGGCGTGTGTGTGTGTTCCGTTTCCAGGCCAAGTCCGTG
CTTCTTGGTGCTCGACGGCCTAACGCCGGGTGGCGATTGGGTGTCAACTG
GAGCGGCATGTAGTATGTACATACGAGACAGTTTTTTCGTCGGGAGGGAG
TTGTTAATTGCTTGTACAGCCATACCCCCTCCTCTCCCTCCCTTGTTGCA
TGCACCTGTTTTGAGGTTAATTTGTTTGGCGTGCCACAGCATGCGTGCTT
CGTCCACTACTGCCGTACTGTCGAGCAAAGGGCACGCCGTTGTTGTACGT
ATTGAAGAAGCAAAGGAGCGAGAAGCGGCGGAAAATTCGAGTTTCCTCTC
TAATTGATGATGATGGCCGGATTGCCACCGGAATTTACTTCATGATGTTT
TTTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14166:144..2697+

>mRNA_H-canaliculatus_F_contig14166.3282.1 ID=mRNA_H-canaliculatus_F_contig14166.3282.1|Name=mRNA_H-canaliculatus_F_contig14166.3282.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1200bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14166:144..2697+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCCTTCCTGCAGGGTCGGCGTTGACGGCCGTCCCTGTCAACGATAA
GGCCGGTGGCAGCACGTGGACAACTGTGTCTTCGTTCTGTCGAGTAAGAG
TCCCACCAAATCTCCTAAAAGTGCCACCAAGTACCACCGATCGGTTCGCA
TCCCTGCCGAGCGTGCTCGCCGTGGGGGAATCGATGCGTCTAGTCCCTGT
CGCTGTGGCCTTTGATGCGGCGAGGGGTGCGCTCCCCTCGGGGCCGTATG
ATTGGCCTGGCCGGCGGCGAGGCCCGTTTGAGGTTGCGGATATGGGCAGT
CCGTCTACCGGCGTCCAGCCTGTGATGATGCAGCTTGCATTTTGTCCCGC
CCTGCTTGCGCCGTGCGAGTGTATTCCGCCCTTGAGTTACACACGGCCGC
TCCTGCGACTTCTTCTGCTGTCCCCGCCCCCACAACTCTGGCCTCTGCCC
TTCGTGACGTCGGCTTCCAGGTACCTTTGCCGACGGTACCGTCTGGGCGA
GGGTATCCCGTCGATGCTGGAGGCGTGGATGATACCGCCGAGCCTCCGCG
GAACCCGGGGATTCGAGGCCAACAACCCCTCCAGCGCAAACCCGCTGTGA
ATGCGCCTTCCTGCAGGGTCGGCGTTGACGGCCGTCCCTGTCAACGATAA
GGCCGGTGGCAGCACGTGGACAACTGTGTCTTCGTTCTGTCGAGTAAGAG
TCCCACCAAATCTCCTAAAAGTGCCACCAAGTACCACCGATCGGTTCGCA
TCCCTGCCGAGCGTGCTCGCCGTGGGGGAATCGATGCGTCTAGTCCCTGT
CGCTGTGGCCTTTGATGCGGCGAGGGGTGCGCTCCCCTCGGGGCCGTATG
ATTGGCCTGGCCGGCGGCGAGGCCCGTTTGAGGTTGCGGATATGGGCAGT
CCGTCTACCGGCGTCCAGCCTGTGATGATGCAGCTTGCATTTTGTCCCGC
CCTGCTTGCGCCGTGCGAGTGTATTCCGCCCTTGAGTTACACACGGCCGC
TCCTGCGACTTCTTCTGCTGTCCCCGCCCCCACAACTCTGGCCTCTGCCC
TTCGTGACGTCGGCTTCCAGGTACCTTTGCCGACGGTACCGTCTGGGCGA
GGGTATCCCGTCGATGCTGGAGGCGTGGATGATACCGCCGAGCCTCCGCG
GAACCCGGGGATTCGAGGCCAACAACCCCTCCAGCGCAAACCCGCTGTGA
back to top