mRNA_H-canaliculatus_F_contig14162.3280.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14162.3280.1
Unique NamemRNA_H-canaliculatus_F_contig14162.3280.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14162.3280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14162contigH-canaliculatus_F_contig14162:1..1311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.0562603-CDS-H-canaliculatus_F_contig14162:0..911622929166.0562603-CDS-H-canaliculatus_F_contig14162:0..91Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14162 1..91 +
1696845702.4421244-CDS-H-canaliculatus_F_contig14162:0..911696845702.4421244-CDS-H-canaliculatus_F_contig14162:0..91Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14162 1..91 +
1622929166.0805972-CDS-H-canaliculatus_F_contig14162:1237..13111622929166.0805972-CDS-H-canaliculatus_F_contig14162:1237..1311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14162 1238..1311 +
1696845702.4518278-CDS-H-canaliculatus_F_contig14162:1237..13111696845702.4518278-CDS-H-canaliculatus_F_contig14162:1237..1311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14162 1238..1311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14162.3280.1prot_H-canaliculatus_F_contig14162.3280.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14162 1..1311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14162.3280.1

>prot_H-canaliculatus_F_contig14162.3280.1 ID=prot_H-canaliculatus_F_contig14162.3280.1|Name=mRNA_H-canaliculatus_F_contig14162.3280.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
GGGGGGGGGGGGGGGGGGGGGGGGVHAQGHPSAGGSGWSRRRAAGAGEVE
VPDG*
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mRNA from alignment at H-canaliculatus_F_contig14162:1..1311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14162.3280.1 ID=mRNA_H-canaliculatus_F_contig14162.3280.1|Name=mRNA_H-canaliculatus_F_contig14162.3280.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1311bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14162:1..1311+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGCGTGCACGCGCAGGGCCATCGTTGGTGAG
AGAGTGACTCTTGTTGTCGCGGAAGCCTCTCGGTCTTGTTGCAAGGCCGG
GTGAAAGGTCGACGCCGCCCAACTCCCGAACGCGTCGCACCCATCACCAA
GCAGGCTGCACGCGCGACCGCGACCGCGACCGCGATCGCCCCCTTTTCTT
GTTTGCCCCGCCGTTGCGACCAAACCCCCCGAATTACAACAGCTCATCCG
GCTCATCCATGACGTCATCGGCGTCGAGGTCCTGCAAGTCGAGGGCCCGG
ACTCCCGACACGCCGCCCCTCCCGGGAGCGCCGGGGGCGGCGGCGGAGGC
GGTATCTTCGGGGGTTCTCGAGGCATCTTTGGTGGCAGCGGCGGCGGCGG
CGGCGGCGGCGGCGGAGGATTTGGCCACGCTGGGGGCGACGGCGGGGCCG
GTCTCGATTCTCTCTCGATGCCCATGATGCTGCAGCTGCGTCCCTCCAAG
GCTAGTCTGTGCTACGTGCGGTCGAAGGGCGGCGGCGGCGGGGCTGGTGG
TGCCGGAGGGGAGGAGGGCGGCTCCGACTCGTCGTCCTCCTCGCTGTCGT
CGCTCGCGCGGGTGGCCGGAGGAGGAGGCCGCGGCGGCGGCGGCAGCGGC
AGCGATGGAAGCAGGGCTGGTGCGGGAGCCGGTGGCGCCGGTGGTGGTTC
CGGAGAGACTCTCGCGGTCTTGGCCTCTGTGCAACCGCTTGCGAAGCTGT
CGCAGCTGAGGTGCGCGTGCGTCCCACAGCGAGCTGCCTTGCTGCTGTTT
GTCGTTGCCGCTGCTGCGTTTTGCCGTGTGTGCGTTTGCGGGCGTGCTCG
TCTGCTGTGCGTGCGTGTGTCCCTTCCCATCCCCCCCACCCCCCCCAGCC
CCCCCCACCCCTTACTTTTTCGCGGGAAGGGTTCAGAGCGTTTCTCACGG
CAACCAGAGGTTCCGCGTGATCACTGTTCTCCTTCGGTTCCCTTACAGCC
GGCGTGGGTATCTCTCTTTCTTGCCTCGGCGGTACCCATCGCAACATCAC
GCCTCTGCTCTCCCGTGCGTCCGCCGCCACGACGGCCCGAAACACCCAGG
GAATTCGTTCTACGATCGGTGCACATCACCCACCCGGCGTACCTGCAATA
CTGCCGAGGGCTGCTGGGGGCGATGGTGTGCATCAAGCCTCCGCAGGGGG
CTCAGGTTGGAGCCGGCGGAGGGCTGCTGGAGCAGGTGAGGTTGAAGTGC
CCGACGGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14162:1..1311+

>mRNA_H-canaliculatus_F_contig14162.3280.1 ID=mRNA_H-canaliculatus_F_contig14162.3280.1|Name=mRNA_H-canaliculatus_F_contig14162.3280.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14162:1..1311+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGCGTGCACGCGCAGGGCCATCGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGCGTGCACGCGCAGGGCCATCCCTCCGCAGGGGGCTCAG
GTTGGAGCCGGCGGAGGGCTGCTGGAGCAGGTGAGGTTGAAGTGCCCGAC
GGCTAGCCTCCGCAGGGGGCTCAGGTTGGAGCCGGCGGAGGGCTGCTGGA
GCAGGTGAGGTTGAAGTGCCCGACGGCTAG
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