prot_H-canaliculatus_F_contig1416.3278.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1416.3278.1
Unique Nameprot_H-canaliculatus_F_contig1416.3278.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length871
Homology
BLAST of mRNA_H-canaliculatus_F_contig1416.3278.1 vs. uniprot
Match: D8LG58_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG58_ECTSI)

HSP 1 Score: 573 bits (1476), Expect = 1.590e-190
Identity = 365/682 (53.52%), Postives = 430/682 (63.05%), Query Frame = 0
Query:    1 MAQEEDVDEDLRTQPLLDSVRSLVNKERQLAGLHLEDKEWEAEQWRTKFLKLQEETGGICSTNDREDVDRAKMFPARSRYPGDLDDDWDDLQAASKKAGDSYLRKLRRKESIELSRRRIGKLDLEGIVTKLRWLRGFTSIDLSDNSIDDTCLQPLKNLMALRQVRRLDLSRNDLGPSAGKALIESLPRCKDLQVLRLQANVVFSRAPDAGARLGSGLRAAIRAGGCRHLWDLSVTLDDFNSTFFQNAPRKTKKKKAGV-PVITGSGRGTSEAVASPALVRQNSADPM-NALTFTRAFHPRASGGGLGALLNGDDGDESAGDGXXXXXXXXXXGASGHKGCITSLGLPYARLHPRTVEELATYAIPSLTHLDLSYCYVGPAGAAALARALAGSESDRGERNGTRGRGSRSLRSLKLPHNAVGDSGARAISKALQGNHCLTFLSLASNGIGSVGGGALAAVVGR-----GGSALDCLDVGDNPLGDVASRLLVAATTAGDGSRSAEGARTGGGGG--GDGRACEWAPVRIHGLDRVAGATVATKAVAEKGVETAAEGSD----VLVAVQEDVSVQSRDA---DGLEQAYQLMLDSRFEPPAEQ-----GSSSGVSETDGESTLDIQWSVATSRADTCEWRVVRKRERRPDFSVKEGVGVDGRLAAGHAKGGSDEPRDGYSLIRL 661
            MAQE D++E+LRTQPLLDSVRSLVNKERQLAGL LE+KE EAE WR +F +LQ E+GGI    D    +  +     S +  + D DWD+LQAASKKAGD YL KLRR+ES++LSRR IGK DLEGIV KLRWLRGFTS+DL  N+IDD C+QPLK+LMALRQ+         LGPS+G AL+ESL RC+ LQVLRL+AN +F+R P AGARL +GL+AAI+AGGCRHLW LSVTLDDF+  FF NAPRKTK K AG  P  TG+GR T +A   P            NAL   RAFHPRA  GG GALLN D   ES  +            A   +G ITSLGLPYARLHPRTVEELA +AI SLTHLDLS+CY+GPAGA ALAR L G +      +GT GRGSRSLRSL+LPHNAVGD+GA A+ ++L  N C                   AA VG      GGS L  LD+GDNPL   A+RLLVAA T          A T G GG  GDG       +++ GLDR  GA VAT+  A                 LVA+  +VSVQ  DA    GL Q YQ++LDSRFE PA++     G + G       +TLDI+WS AT   D C WRV + R+ +P+ SVKEGVG +    +G A     E RDGY   RL
Sbjct:   30 MAQE-DLEEELRTQPLLDSVRSLVNKERQLAGLQLEEKEREAELWRDRFRQLQIESGGI----DSAAREAGETIATESWHRDEEDSDWDNLQAASKKAGDRYLGKLRRQESLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRGNNIDDACVQPLKSLMALRQLCXXXXXXXQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLKAAIKAGGCRHLWSLSVTLDDFDGNFFMNAPRKTKAKTAGGGPTATGTGRSTRKAAGPPPXXXXXXXXXXXNALALARAFHPRAPDGGAGALLNEDG--ESEANSRGVRGNTKRGSARVGRGSITSLGLPYARLHPRTVEELAAHAISSLTHLDLSFCYIGPAGAVALARGLDGHDGGSSRGSGTHGRGSRSLRSLQLPHNAVGDTGAHALGQSLSSNRCXXXXXXXXXXXXXXXXXXXAAAVGSRGNDGGGSVLTRLDMGDNPLEGEAARLLVAAAT--------RQAPTDGHGGKDGDGTTRGATTLQVLGLDRALGAAVATREAAXXXXXXXXXXXXXXXXTLVAIGNEVSVQPEDAIGNGGLVQVYQVLLDSRFEMPADEIFTIRGGAKGRG-----ATLDIEWSCATDWLDPCWWRVSQTRKGQPELSVKEGVGTEEGWVSGQANHDGGELRDGYRCQRL 691          
BLAST of mRNA_H-canaliculatus_F_contig1416.3278.1 vs. uniprot
Match: A0A6H5K012_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K012_9PHAE)

HSP 1 Score: 526 bits (1356), Expect = 2.180e-172
Identity = 362/750 (48.27%), Postives = 425/750 (56.67%), Query Frame = 0
Query:    1 MAQEEDVDEDLRTQPLLDSVRS--------------------------------------------------------------LVNKERQLAGLHLEDKEWEAEQWRTKFLKLQEETGGICSTNDREDVDRAKMFPARSRYPGDLDDDWD---DLQAASKKAGDSYLRKLRRKESIELSRRRIGKLDLEGIVTKLRWLRGFTSIDLSDNSIDDTCLQPLKNLMALRQVRRLDLSRNDLGPSAGKALIESLPRCKDLQVLRLQANVVFSRAPDAGARLGSGLRAAIRAGGCRHLWDLSVTLDDFNSTFFQNAPRKTKKKKAGV-PVITGSGRGTSEAVASP-ALVRQNSADPMNALTFTRAFHPRASGGGLGALLNGDDGDESAGDGXXXXXXXXXXGASGHKGCITSLGLPYARLHPRTVEELATYAIPSLTHLDLSYCYVGPAGAAALARALAGSESDRGERNGTRGRGSRSLRSLKLPHNAVGDSGARAISKALQGNHCLTFLSLASNGIGSVGGGALAAVVGR-----GGSALDCLDVGDNPLGDVASRLLVAATTAGDGSRSAEGARTGGGGG--GDGRACEWAPVRIHGLDRVAGATVATKAVAEKGVETAAEG----SDVLVAVQEDVSVQSRDA---DGLEQA--------YQLMLDSRFEPPAEQGSSSGVSETDGESTLDIQWSVATSRADTCEWRVVRKRERRPDFSVKEGVGVDGRLAAGHAKGGSDEPRDGYSLIRL 661
            MAQE D+DE+LRTQPLLDSVRS                                                              LVNKERQLAGL LE+KE EAE WR +F +LQ                        S +   + D+WD   +LQAASKKAGD YL KLRR++S++LSRR IGK DLEGIV KLRWLRGFTS+DL DNSIDDTC+QPLK+LMALRQ+  LDL  N LGPS+G AL+ESL RC+ LQVLRL+AN +F+R P AGARL +GLRAAI+AGGCR LW LSVTLDDF+  FF NAPRKTK + AG  P  TG+GR   +A   P A          NAL   RAFHPRA  GG GA LNGD   ES  +            A   +G ITSLGLPYARLHP+TVEELA +A+ SLT LDLS+CY+GPAGA  LARAL G +      +GTRG+GSRSLRSLKLPHNAVGD+GA A+ ++L  N C                   AA VG      GGS L  LD+GDNPL   A+RLLVAA T          A T G GG  GDG       +++ GLDR  G  VAT+                 +  LV +  +VSVQ  DA   DGL Q         YQ++LDSRFE PA++  +         +TL+IQWS AT   D C WRV + RE RP+FSVKEGVG +    +G A     E RDGY   RL
Sbjct:   30 MAQE-DLDEELRTQPLLDSVRSNDIASSSFLQRDQNPKLKRGANGTTSSTTTDDHLVGRSVFCTIVYACADNSSIRLPLLFLEGLVNKERQLAGLQLEEKEREAELWRDRFRQLQ-----------------------ASPFFVHVWDEWDVQDNLQAASKKAGDPYLGKLRRQDSLDLSRRGIGKEDLEGIVVKLRWLRGFTSVDLRDNSIDDTCVQPLKSLMALRQLCSLDLRGNQLGPSSGNALLESLSRCRRLQVLRLEANGLFARTPGAGARLAAGLRAAIKAGGCRRLWSLSVTLDDFDGKFFMNAPRKTKAETAGGGPKATGTGRSLRKAAGPPPAXXXXXXXXXXNALALARAFHPRAPDGGAGAFLNGDG--ESEANSRGVRGNTRRGSARVGRGSITSLGLPYARLHPKTVEELAAHAVSSLTSLDLSFCYIGPAGAVTLARALDGDDGSSRRGSGTRGQGSRSLRSLKLPHNAVGDTGAHALGRSLSNNRCXXXXXXXXXXXXXXXXXXXAAAVGSRGNDGGGSVLTRLDMGDNPLEGEAARLLVAAATCD--------APTKGHGGTDGDGTTRGTTTLQVLGLDRALGTAVATREAXXXXXXXXXXXXXXTTTTLVTIGNEVSVQPEDAIGNDGLVQVGTRVNTMVYQVLLDSRFETPADEIFTIRGGARGRGATLEIQWSFATDWLDPCWWRVSQTREGRPEFSVKEGVGSEEGWVSGQANNDGAEMRDGYRCQRL 745          
BLAST of mRNA_H-canaliculatus_F_contig1416.3278.1 vs. uniprot
Match: A0A7S2WJM3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJM3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.040e-16
Identity = 112/389 (28.79%), Postives = 167/389 (42.93%), Query Frame = 0
Query:  101 SYLRKLRRKESIELSRRRIGKLDLEGIVTKLRWLRGFTSIDLSDNSIDDTCLQPLKNLMALRQVRRLDLSRNDLGPSAGKALIESLPRCKDLQVLRLQANVVFSRAPDAGARLGSGLRAAIRAGGCRHLWDLSVTLDDFNSTFFQNAPRKTKKKKAGVPVITGSGRGTSEAVASPALVRQNSADPMNALTFTRAFHPRASGGGLGALLNGDDGDESAGDGXXXXXXXXXXGASGHKGCITSLGLPYARLHPRTVEELATYAIP----SLTHLDLSYCYVGPAGAAALARALAGSESDRGERNGTRGRGSRSLRSLKLPHNAVGDSGARAISKAL--QGNHCLTFLSLASNGIGSVGGGALAAVVGRGGSALDCLDVGDNPLGDVASRLL 483
            + L+ L+  E ++LS   +   DLE  + +L  L     + L+   + D   + L+ L+    ++ +DLS N+LG     A++ +LPR   +  L L+ N   +  P  G RLG+ L  A R     +L  L VTLDD+NS                         G + A  +    ++    P+NA+ F R    RA        L                              +++LGL  ARL   T+++L++        SLT+LDLS+ ++G AGA ALA AL         R G        L  L+LPHN +G  G  AI +AL    N  LT L++ +N I   G  AL  +V    + L  L++GDN LG  AS  L
Sbjct:  129 AILKILKGLEHLDLSDEPLKAKDLEAAIKRLPRLHRSPRLSLARAGLTDDLARTLQKLLEYSFIK-VDLSSNNLGAIGLAAVLTALPRRASVTELNLEDNQPLASTPLVGERLGNFLMDAYRY--APNLCSLRVTLDDYNSP------------------------GAAAAAKAKGGAKRRGKSPLNAVQFVRMLR-RAD------TLT-----------------------------LSNLGLVGARLSLETIKQLSSLLGERPGQSLTNLDLSFAFIGFAGATALASAL--------RRPGC------PLAGLQLPHNGLGSGGTEAICEALLKSRNETLTTLNVRANQITDSGAEALRRLV-LASTTLTFLELGDNDLGSRASAQL 439          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1416.3278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG58_ECTSI1.590e-19053.52Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K012_9PHAE2.180e-17248.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2WJM3_9STRA3.040e-1628.79Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 362..389
e-value: 0.17
score: 21.0
coord: 161..188
e-value: 0.29
score: 20.2
coord: 462..489
e-value: 54.0
score: 4.9
coord: 433..460
e-value: 1.8
score: 15.3
coord: 405..432
e-value: 4.5E-4
score: 29.5
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 110..201
coord: 355..494
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 103..479
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 83..246
e-value: 2.3E-14
score: 54.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 332..494
e-value: 5.7E-26
score: 92.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 363..384
e-value: 0.015
score: 15.3
coord: 164..182
e-value: 0.61
score: 10.3
coord: 433..455
e-value: 0.01
score: 15.8
coord: 405..427
e-value: 0.075
score: 13.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1416contigH-canaliculatus_F_contig1416:13059..18246 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1416.3278.1mRNA_H-canaliculatus_F_contig1416.3278.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1416 12896..19347 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1416.3278.1 ID=prot_H-canaliculatus_F_contig1416.3278.1|Name=mRNA_H-canaliculatus_F_contig1416.3278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=871bp
MAQEEDVDEDLRTQPLLDSVRSLVNKERQLAGLHLEDKEWEAEQWRTKFL
KLQEETGGICSTNDREDVDRAKMFPARSRYPGDLDDDWDDLQAASKKAGD
SYLRKLRRKESIELSRRRIGKLDLEGIVTKLRWLRGFTSIDLSDNSIDDT
CLQPLKNLMALRQVRRLDLSRNDLGPSAGKALIESLPRCKDLQVLRLQAN
VVFSRAPDAGARLGSGLRAAIRAGGCRHLWDLSVTLDDFNSTFFQNAPRK
TKKKKAGVPVITGSGRGTSEAVASPALVRQNSADPMNALTFTRAFHPRAS
GGGLGALLNGDDGDESAGDGGRGGGGGRGRGASGHKGCITSLGLPYARLH
PRTVEELATYAIPSLTHLDLSYCYVGPAGAAALARALAGSESDRGERNGT
RGRGSRSLRSLKLPHNAVGDSGARAISKALQGNHCLTFLSLASNGIGSVG
GGALAAVVGRGGSALDCLDVGDNPLGDVASRLLVAATTAGDGSRSAEGAR
TGGGGGGDGRACEWAPVRIHGLDRVAGATVATKAVAEKGVETAAEGSDVL
VAVQEDVSVQSRDADGLEQAYQLMLDSRFEPPAEQGSSSGVSETDGESTL
DIQWSVATSRADTCEWRVVRKRERRPDFSVKEGVGVDGRLAAGHAKGGSD
EPRDGYSLIRLRCNGWRKHDLLKIFVGSSDGGAGPVTCCDLTIGLVKREP
LSASPMTYGLLWADPGGVNGDVERESTWPEEDGQRSPSSAECAEVAFQMS
NHKNLCSATSEQTEARSTRNGFSSASAMHRLRHVQVGHGGRIRASWQAIL
AASPPKPSGQAFPWGRNASGRRMDGERGGGRGARRVRVLTAPATPHVASF
CRDLCLIPQLTPMIVAPTES*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf