mRNA_H-canaliculatus_F_contig1416.3275.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1416.3275.1
Unique NamemRNA_H-canaliculatus_F_contig1416.3275.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1416.3275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1416contigH-canaliculatus_F_contig1416:2322..2899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size492
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.2972088-UTR-H-canaliculatus_F_contig1416:2321..24071622929165.2972088-UTR-H-canaliculatus_F_contig1416:2321..2407Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1416 2322..2407 +
1696845702.1322389-UTR-H-canaliculatus_F_contig1416:2321..24071696845702.1322389-UTR-H-canaliculatus_F_contig1416:2321..2407Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1416 2322..2407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.4278438-CDS-H-canaliculatus_F_contig1416:2407..28991622929165.4278438-CDS-H-canaliculatus_F_contig1416:2407..2899Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1416 2408..2899 +
1696845702.1414206-CDS-H-canaliculatus_F_contig1416:2407..28991696845702.1414206-CDS-H-canaliculatus_F_contig1416:2407..2899Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1416 2408..2899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1416.3275.1prot_H-canaliculatus_F_contig1416.3275.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1416 2408..2899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1416.3275.1

>prot_H-canaliculatus_F_contig1416.3275.1 ID=prot_H-canaliculatus_F_contig1416.3275.1|Name=mRNA_H-canaliculatus_F_contig1416.3275.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MIHTCPTSLCEDRSFRDQHPADRPHGTAAHRSSLRTTTRRITRGCDRGES
FFGGAEHDFVSHGELTVGPELQKPQMKLGLVPRRHPLASVSAGSSIHPCD
TKASPRTLSASLQAGETATLDERLCSEDAEYMHGFLDPTFSLSYPDLPAL
ACRSPPPWPYPEAL
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mRNA from alignment at H-canaliculatus_F_contig1416:2322..2899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1416.3275.1 ID=mRNA_H-canaliculatus_F_contig1416.3275.1|Name=mRNA_H-canaliculatus_F_contig1416.3275.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=578bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1416:2322..2899+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTTGTGGTACCCAGCGCACCGAACATTAAACTTAGCATATATAGACG
CCATACGCACGTGCAACATGTCATGCACTCTCTCCGATGATACATACATG
CCCAACGTCTCTCTGTGAGGATCGTTCGTTCCGGGATCAACACCCAGCCG
ATCGGCCGCATGGCACAGCGGCACATCGAAGCTCGCTACGCACAACAACC
AGACGCATCACGAGGGGTTGTGATCGTGGTGAGTCGTTCTTCGGCGGGGC
TGAACACGACTTTGTATCCCACGGAGAGCTTACCGTGGGACCTGAACTAC
AAAAGCCTCAGATGAAGCTCGGACTTGTTCCCCGCCGACACCCACTTGCA
TCCGTCTCGGCCGGTTCTTCCATCCACCCTTGCGATACAAAAGCCAGCCC
CCGGACACTCAGCGCCTCCTTGCAGGCCGGGGAGACAGCTACCCTAGACG
AACGACTTTGCTCGGAAGATGCGGAATACATGCATGGTTTTCTCGATCCC
ACTTTCTCTCTGTCCTACCCCGACCTACCCGCTCTTGCTTGCCGCTCCCC
ACCCCCCTGGCCGTATCCAGAAGCGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1416:2322..2899+

>mRNA_H-canaliculatus_F_contig1416.3275.1 ID=mRNA_H-canaliculatus_F_contig1416.3275.1|Name=mRNA_H-canaliculatus_F_contig1416.3275.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1416:2322..2899+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATACATACATGCCCAACGTCTCTCTGTGAGGATCGTTCGTTCCGGGA
TCAACACCCAGCCGATCGGCCGCATGGCACAGCGGCACATCGAAGCTCGC
TACGCACAACAACCAGACGCATCACGAGGGGTTGTGATCGTGGTGAGTCG
TTCTTCGGCGGGGCTGAACACGACTTTGTATCCCACGGAGAGCTTACCGT
GGGACCTGAACTACAAAAGCCTCAGATGAAGCTCGGACTTGTTCCCCGCC
GACACCCACTTGCATCCGTCTCGGCCGGTTCTTCCATCCACCCTTGCGAT
ACAAAAGCCAGCCCCCGGACACTCAGCGCCTCCTTGCAGGCCGGGGAGAC
AGCTACCCTAGACGAACGACTTTGCTCGGAAGATGCGGAATACATGCATG
GTTTTCTCGATCCCACTTTCTCTCTGTCCTACCCCGACCTACCCGCTCTT
GCTTGCCGCTCCCCACCCCCCTGGCCGTATCCAGAAGCGCTGATGATACA
TACATGCCCAACGTCTCTCTGTGAGGATCGTTCGTTCCGGGATCAACACC
CAGCCGATCGGCCGCATGGCACAGCGGCACATCGAAGCTCGCTACGCACA
ACAACCAGACGCATCACGAGGGGTTGTGATCGTGGTGAGTCGTTCTTCGG
CGGGGCTGAACACGACTTTGTATCCCACGGAGAGCTTACCGTGGGACCTG
AACTACAAAAGCCTCAGATGAAGCTCGGACTTGTTCCCCGCCGACACCCA
CTTGCATCCGTCTCGGCCGGTTCTTCCATCCACCCTTGCGATACAAAAGC
CAGCCCCCGGACACTCAGCGCCTCCTTGCAGGCCGGGGAGACAGCTACCC
TAGACGAACGACTTTGCTCGGAAGATGCGGAATACATGCATGGTTTTCTC
GATCCCACTTTCTCTCTGTCCTACCCCGACCTACCCGCTCTTGCTTGCCG
CTCCCCACCCCCCTGGCCGTATCCAGAAGCGCTG
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