mRNA_H-canaliculatus_F_contig1415.3271.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1415.3271.1
Unique NamemRNA_H-canaliculatus_F_contig1415.3271.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1415.3271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1415contigH-canaliculatus_F_contig1415:6541..7041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size501
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1415.3271.1prot_H-canaliculatus_F_contig1415.3271.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1415 6609..6971 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.8053896-UTR-H-canaliculatus_F_contig1415:6540..66081622929164.8053896-UTR-H-canaliculatus_F_contig1415:6540..6608Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1415 6541..6608 +
1696845701.9046612-UTR-H-canaliculatus_F_contig1415:6540..66081696845701.9046612-UTR-H-canaliculatus_F_contig1415:6540..6608Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1415 6541..6608 +
1622929164.8238776-UTR-H-canaliculatus_F_contig1415:6971..70411622929164.8238776-UTR-H-canaliculatus_F_contig1415:6971..7041Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1415 6972..7041 +
1696845701.9271321-UTR-H-canaliculatus_F_contig1415:6971..70411696845701.9271321-UTR-H-canaliculatus_F_contig1415:6971..7041Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1415 6972..7041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.8150482-CDS-H-canaliculatus_F_contig1415:6608..69711622929164.8150482-CDS-H-canaliculatus_F_contig1415:6608..6971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1415 6609..6971 +
1696845701.9140396-CDS-H-canaliculatus_F_contig1415:6608..69711696845701.9140396-CDS-H-canaliculatus_F_contig1415:6608..6971Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1415 6609..6971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1415.3271.1

>prot_H-canaliculatus_F_contig1415.3271.1 ID=prot_H-canaliculatus_F_contig1415.3271.1|Name=mRNA_H-canaliculatus_F_contig1415.3271.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MARRVIFDLRRQCRRRKICRHVKNKNHTHNPPIDLPYTPLHHTYPTRSIT
TFFCPCFCRILHNEPSLLGIRQKPRGRSHMTSLSRCSSGVFTPFFKITTS
ATTATTSTAVLTFLLNVSAW*
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mRNA from alignment at H-canaliculatus_F_contig1415:6541..7041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1415.3271.1 ID=mRNA_H-canaliculatus_F_contig1415.3271.1|Name=mRNA_H-canaliculatus_F_contig1415.3271.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1415:6541..7041+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGTCTCTGGGTTGAATACAGCGATGCTTGGGACAGCAAGAGGATAGAG
GCAGGGAAGGGCGGTGTGATGGCCCGAAGGGTGATCTTCGATCTGCGAAG
GCAATGCCGCAGACGGAAGATATGCCGCCACGTGAAGAACAAGAATCATA
CGCATAATCCACCAATCGACTTACCATACACACCTCTTCACCACACATAC
CCTACGCGAAGTATCACAACATTTTTCTGTCCATGTTTTTGTCGTATCCT
GCACAATGAACCCTCGTTGTTGGGAATTCGTCAGAAACCTCGAGGTAGGT
CTCATATGACATCCCTCAGCAGGTGTTCCTCCGGTGTTTTTACGCCTTTC
TTTAAAATAACAACATCAGCGACCACCGCCACAACATCAACTGCAGTCCT
CACTTTCCTTCTAAACGTCAGTGCCTGGTAAGTCCCTTTGACACCCTTCC
TCGATCCGAATCGCCACGAACCCGAATCGCAGAAAAAAGAGGCGATCCAG
C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1415:6541..7041+

>mRNA_H-canaliculatus_F_contig1415.3271.1 ID=mRNA_H-canaliculatus_F_contig1415.3271.1|Name=mRNA_H-canaliculatus_F_contig1415.3271.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1415:6541..7041+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCCGAAGGGTGATCTTCGATCTGCGAAGGCAATGCCGCAGACGGAA
GATATGCCGCCACGTGAAGAACAAGAATCATACGCATAATCCACCAATCG
ACTTACCATACACACCTCTTCACCACACATACCCTACGCGAAGTATCACA
ACATTTTTCTGTCCATGTTTTTGTCGTATCCTGCACAATGAACCCTCGTT
GTTGGGAATTCGTCAGAAACCTCGAGGTAGGTCTCATATGACATCCCTCA
GCAGGTGTTCCTCCGGTGTTTTTACGCCTTTCTTTAAAATAACAACATCA
GCGACCACCGCCACAACATCAACTGCAGTCCTCACTTTCCTTCTAAACGT
CAGTGCCTGGTAAATGGCCCGAAGGGTGATCTTCGATCTGCGAAGGCAAT
GCCGCAGACGGAAGATATGCCGCCACGTGAAGAACAAGAATCATACGCAT
AATCCACCAATCGACTTACCATACACACCTCTTCACCACACATACCCTAC
GCGAAGTATCACAACATTTTTCTGTCCATGTTTTTGTCGTATCCTGCACA
ATGAACCCTCGTTGTTGGGAATTCGTCAGAAACCTCGAGGTAGGTCTCAT
ATGACATCCCTCAGCAGGTGTTCCTCCGGTGTTTTTACGCCTTTCTTTAA
AATAACAACATCAGCGACCACCGCCACAACATCAACTGCAGTCCTCACTT
TCCTTCTAAACGTCAGTGCCTGGTAA
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