mRNA_H-canaliculatus_F_contig14143.3267.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14143.3267.1
Unique NamemRNA_H-canaliculatus_F_contig14143.3267.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14143.3267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14143contigH-canaliculatus_F_contig14143:2..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size512
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.644354-UTR-H-canaliculatus_F_contig14143:1..2061622929164.644354-UTR-H-canaliculatus_F_contig14143:1..206Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14143 2..206 +
1696845701.8233447-UTR-H-canaliculatus_F_contig14143:1..2061696845701.8233447-UTR-H-canaliculatus_F_contig14143:1..206Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14143 2..206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.6610947-CDS-H-canaliculatus_F_contig14143:206..5121622929164.6610947-CDS-H-canaliculatus_F_contig14143:206..512Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14143 207..512 +
1696845701.832642-CDS-H-canaliculatus_F_contig14143:206..5121696845701.832642-CDS-H-canaliculatus_F_contig14143:206..512Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14143 207..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14143.3267.1prot_H-canaliculatus_F_contig14143.3267.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14143 207..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14143.3267.1

>prot_H-canaliculatus_F_contig14143.3267.1 ID=prot_H-canaliculatus_F_contig14143.3267.1|Name=mRNA_H-canaliculatus_F_contig14143.3267.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=102bp
MDLLGIDWSRNEPLGAVCTTLQPPNKSTSCLTMSSSTRFPRPTHRITMGQ
FPQPESQDEECTNFVSNLFPAKSSASSLARRTRYHTPSLILNFGLRCFVL
VA
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mRNA from alignment at H-canaliculatus_F_contig14143:2..512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14143.3267.1 ID=mRNA_H-canaliculatus_F_contig14143.3267.1|Name=mRNA_H-canaliculatus_F_contig14143.3267.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=511bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14143:2..512+ (Hapterophycus canaliculatus Oshoro5f female)
TCGGAATGAAGTGTGGGCTCATCGACGATCAATTCCGGAAAGAGGAAGGC
TCACTTCGGTGTGACTTTTTCAAGTTGGTATCGACTACCGCGGCAGCTAG
GAACGACAGTAATGCGCGGCATTTTCGGGGTGGTGACTGGCCTGCTTGTT
GCTGATTGGTCCAGGAACGGACCACCATGGTAATGCGCGGTATCTGTTGG
GTGGTATGGATCTCCTTGGAATTGACTGGTCCAGGAACGAGCCCCTCGGT
GCCGTGTGTACCACCCTTCAACCTCCAAACAAATCGACTTCATGCCTGAC
AATGTCTTCCTCAACGCGCTTTCCAAGGCCAACTCACAGGATCACGATGG
GGCAATTTCCTCAGCCCGAAAGCCAAGACGAAGAGTGCACCAATTTCGTC
TCTAACTTATTTCCAGCAAAATCGTCCGCGTCGTCACTTGCAAGACGCAC
GAGATATCATACGCCAAGTCTAATTTTGAATTTTGGTCTTAGGTGCTTCG
TGCTTGTTGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14143:2..512+

>mRNA_H-canaliculatus_F_contig14143.3267.1 ID=mRNA_H-canaliculatus_F_contig14143.3267.1|Name=mRNA_H-canaliculatus_F_contig14143.3267.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14143:2..512+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATCTCCTTGGAATTGACTGGTCCAGGAACGAGCCCCTCGGTGCCGT
GTGTACCACCCTTCAACCTCCAAACAAATCGACTTCATGCCTGACAATGT
CTTCCTCAACGCGCTTTCCAAGGCCAACTCACAGGATCACGATGGGGCAA
TTTCCTCAGCCCGAAAGCCAAGACGAAGAGTGCACCAATTTCGTCTCTAA
CTTATTTCCAGCAAAATCGTCCGCGTCGTCACTTGCAAGACGCACGAGAT
ATCATACGCCAAGTCTAATTTTGAATTTTGGTCTTAGGTGCTTCGTGCTT
GTTGCTATGGATCTCCTTGGAATTGACTGGTCCAGGAACGAGCCCCTCGG
TGCCGTGTGTACCACCCTTCAACCTCCAAACAAATCGACTTCATGCCTGA
CAATGTCTTCCTCAACGCGCTTTCCAAGGCCAACTCACAGGATCACGATG
GGGCAATTTCCTCAGCCCGAAAGCCAAGACGAAGAGTGCACCAATTTCGT
CTCTAACTTATTTCCAGCAAAATCGTCCGCGTCGTCACTTGCAAGACGCA
CGAGATATCATACGCCAAGTCTAATTTTGAATTTTGGTCTTAGGTGCTTC
GTGCTTGTTGCT
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