mRNA_H-canaliculatus_F_contig14133.3264.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14133.3264.1
Unique NamemRNA_H-canaliculatus_F_contig14133.3264.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14133.3264.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 6.970e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  111 KQVVRFLLSACHDGGLEVVSARASLRQLLPPHTWPMGDITIDAGWAGLTGNQIWIVSSVLPLLFAPISADVN 326
            K+++ F+L A    G E+V  R + R++LPP+  PM DIT   GWA LTG Q+W+VSS+ P L API +  N
Sbjct:  133 KKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPN 204
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BLAST of mRNA_H-canaliculatus_F_contig14133.3264.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 7.980e-13
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  111 KQVVRFLLSACHDGGLEVVSARASLRQLLPPHTWPMGDITIDAGWAGLTGNQIWIVSSVLPLLFAPISADVN 326
            K+++ F+L A    G E+V  R + R++LPP+  PM DIT   GWA LTG Q+W+VSS+ P L API +  N
Sbjct:  238 KKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPN 309
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BLAST of mRNA_H-canaliculatus_F_contig14133.3264.1 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.310e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 3 
Query:  111 KQVVRFLLSACHDGGLEVVSARASLRQLLPPHTWPMGDITIDAGWAGLTGNQIWIVSSVLPLLFAPISADVN 326
            K+++ F+L A      E+V  R + R++LP +  PM DIT   GWA LTG Q+W+VSS+ P L API +  N
Sbjct:   14 KKIMTFVLDALDSAVSEIVRGRFAWRRMLPQNVLPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPN 85
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BLAST of mRNA_H-canaliculatus_F_contig14133.3264.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.790e-10
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 3 
Query:   84 ELAAQEKEQKQVVRFLLSACHDGGLEVVSARASLRQLLPPHTWPMGDITIDAGWAGLTGNQIWIVSSVLPLLFAPISADVNSMVT 338
            E++   K    ++ F++ A    G ++V AR + R++LP +  P+ DIT   GW+ LTG Q+WIVSS+ P L AP+ +  +++V+
Sbjct:  594 EISVGTKLTVTIMGFVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSSPDNLVS 678
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14133.3264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4Y8_ECTSI6.970e-1347.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI4_ECTSI7.980e-1347.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSA9_ECTSI5.310e-1144.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGI1_9PHAE2.790e-1036.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14133contigH-canaliculatus_F_contig14133:106..2231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size647
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14133.3264.1prot_H-canaliculatus_F_contig14133.3264.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14133 361..2178 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.262051-UTR-H-canaliculatus_F_contig14133:105..3601622929164.262051-UTR-H-canaliculatus_F_contig14133:105..360Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14133 106..360 -
1696845701.5941553-UTR-H-canaliculatus_F_contig14133:105..3601696845701.5941553-UTR-H-canaliculatus_F_contig14133:105..360Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14133 106..360 -
1622929164.313376-UTR-H-canaliculatus_F_contig14133:2178..22311622929164.313376-UTR-H-canaliculatus_F_contig14133:2178..2231Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14133 2179..2231 -
1696845701.6358626-UTR-H-canaliculatus_F_contig14133:2178..22311696845701.6358626-UTR-H-canaliculatus_F_contig14133:2178..2231Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14133 2179..2231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.276933-CDS-H-canaliculatus_F_contig14133:360..3891622929164.276933-CDS-H-canaliculatus_F_contig14133:360..389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14133 361..389 -
1696845701.6035569-CDS-H-canaliculatus_F_contig14133:360..3891696845701.6035569-CDS-H-canaliculatus_F_contig14133:360..389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14133 361..389 -
1622929164.2888844-CDS-H-canaliculatus_F_contig14133:821..10791622929164.2888844-CDS-H-canaliculatus_F_contig14133:821..1079Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14133 822..1079 -
1696845701.6150303-CDS-H-canaliculatus_F_contig14133:821..10791696845701.6150303-CDS-H-canaliculatus_F_contig14133:821..1079Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14133 822..1079 -
1622929164.2999415-CDS-H-canaliculatus_F_contig14133:2126..21781622929164.2999415-CDS-H-canaliculatus_F_contig14133:2126..2178Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14133 2127..2178 -
1696845701.6254592-CDS-H-canaliculatus_F_contig14133:2126..21781696845701.6254592-CDS-H-canaliculatus_F_contig14133:2126..2178Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14133 2127..2178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14133.3264.1

>prot_H-canaliculatus_F_contig14133.3264.1 ID=prot_H-canaliculatus_F_contig14133.3264.1|Name=mRNA_H-canaliculatus_F_contig14133.3264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
MYTKVDTREGELAAQEKEQKQVVRFLLSACHDGGLEVVSARASLRQLLPP
HTWPMGDITIDAGWAGLTGNQIWIVSSVLPLLFAPISADVNSMVTVCFRT
TGAGTVRAILGD*
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mRNA from alignment at H-canaliculatus_F_contig14133:106..2231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14133.3264.1 ID=mRNA_H-canaliculatus_F_contig14133.3264.1|Name=mRNA_H-canaliculatus_F_contig14133.3264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2126bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14133:106..2231- (Hapterophycus canaliculatus Oshoro5f female)
AGATTTAGGGGCTGAGATCAACAAGCCGGAGAAGATCAAACGAAGGCAAC
CCCATGTACACAAAAGTGGACACACGGGAAGGCGAACTGGCCGCACAAGA
GAAAGGCAAGTGAAATCAGCTTGCTTGTTGCGGTAAAAAAGTGCCTTATG
ATCATGGCTAGAAATTTCGGTGTGCATCGCACTACTATACAAACCCGAAA
GTAACAAAGCTGTTCGATGAAAAAAAAAACGGCACCCAGCTCTCGCTCAG
CCTCTTGTCGATAAGTGTTAAACCTCGCGCGCGTGATGTACCTGCTTGCG
TGGATGCTTTTATAAAAAAAGTCAACAGCACCGAAGGAATACCCACCTGA
GACACTGTCTATCTCAAGGGGCTTTTGTTTTTTCCGTTCAGTGAGGGTTC
CATCCGAGTGGCAGGATGAAACTTTGTAGCAGTAGGCCAGTTGTGGGACA
AAAACGTGAAGATTTTTGGACAAATGTTTAGTTTCTCTATCTGTTTTCCA
TGCCCGGCAATGAAGGAAGAGATTTAGAAGCATTAAGGTCTGGTGCCTAC
TCTGCATATATTTGGCGCAAGCGTGATCCAGAGTCGGGAGAGGCTCTCCT
TTCTACCTAGGCCTAAAGGGTTTCGTCGTTGCTATATTCGTGTCTTTCGC
CGTTGATGGCTTCAGAGATTCGAGGTAGAACACTGTTGGCGGGGGCTTTT
GCTAGTGGTTGCCCGCTTCGGCAGGCGTGACGCCCGTTGCGTCCGGTTCT
GCGACGTTGCCTGACAAGGTGTATGAACTCTCGACGACCTGAATGAAAAA
AGGCCCCGCAACGTGGGAAATGGTACCCAGACAACCTGGGCCAAACCATC
TACCTTGTCGGTGGGCACAACCTGGAGAAACGAAAGTGTACAATCAGGCC
TCACAACGTAGAAAATTGTCGCCGGACAATCTGCGGACAAACGGGACGTT
ATCGATGGGGCACAACCTGAATTGGATCCGGTTGTGCAGTCAGCCCATGC
AACGTGTACATTTGTCCACCTGTGTGGCGACATAGACTTCATGTTGGTTT
ATGAGAACAGCGATGCATTCGCCTCCCTTCTCTACCCGCACTCACCCCGT
CCCCAAATTCCATACACCGCAACCTTTTGGACCTTCTCTTTCTCGATCTC
AGAACAAAAGCAAGTGGTCCGCTTCTTGCTATCTGCATGTCATGACGGCG
GGCTCGAAGTTGTGTCCGCACGGGCATCTTTGCGTCAGCTCCTGCCTCCT
CACACATGGCCGATGGGAGACATCACCATAGATGCGGGATGGGCCGGTCT
GACCGGAAACCAGATTTGGATCGTTTCAAGCGTGCTCCCGCTGCTGTTCG
CTCCAATCTCCGCGGACGTCAATTCAATGGTAACCGTCTGCTTCCGCACA
ACTGGTGCGGGTGAGCAATATTTGGATTCTGCTGACCGCCCACGACTCGT
GTTGCCATCTTTGTGAATCTTGACAGTGCTTCGGGTCCTTGTTGCATCAT
GCGAGGGTGGCTGGGGATGAAGACACCAAATGAATTGCAAGTAAACGCGG
GCCATGTGCAAGGCTTTTCGTCCTATCTCAAAGTCATCTTCAGAGTTATG
CCCTGAGGAGCGTGGGGGCGGGGGCTCATGCTCACGTTCTTGTCTCTGAT
CTGGTTGCCAATCCGCGTTTTATGCCTGCCGATTTAAGGCTCCACGTGAG
TTCTTCGTCTCCGCAGACATTAGAGTCCTAAACGCCATCCAGCGCCCATT
TACTGAAACAACGTCCACACCATTGCCTTATCCTGTGGAGCAGAACGTCT
TTGTCAACAGACTCTTTGTCGCACACCGTACCTTTTCCTCAGGAACAGTA
CGTGCGATCCTCGGAGATTGACGTCGTCACTGTAAGGATGGGGTCGGCGT
ATAACAACACCTCGGAAAAGAGGGAGGTGTGCCAGGCATTCTGGACACTC
ATCCAATCGTGCAGTGCCAGCACCTGCATGGTAAGGCCTCTCTCGTACAC
TGCATCAGAGCTAAGCGCGCTGGAGAAGACCGAGAGAGAACAGGCTGGGC
GATTCTCGTGGTTATTTCTGATTTTTATCGAGGACGTGCTGCGGCGACAT
TCAAATGGTTAGGGGAGAAATCGAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14133:106..2231-

>mRNA_H-canaliculatus_F_contig14133.3264.1 ID=mRNA_H-canaliculatus_F_contig14133.3264.1|Name=mRNA_H-canaliculatus_F_contig14133.3264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14133:106..2231- (Hapterophycus canaliculatus Oshoro5f female)
ATGTACACAAAAGTGGACACACGGGAAGGCGAACTGGCCGCACAAGAGAA
AGATGTACACAAAAGTGGACACACGGGAAGGCGAACTGGCCGCACAAGAG
AAAGAACAAAAGCAAGTGGTCCGCTTCTTGCTATCTGCATGTCATGACGG
CGGGCTCGAAGTTGTGTCCGCACGGGCATCTTTGCGTCAGCTCCTGCCTC
CTCACACATGGCCGATGGGAGACATCACCATAGATGCGGGATGGGCCGGT
CTGACCGGAAACCAGATTTGGATCGTTTCAAGCGTGCTCCCGCTGCTGTT
CGCTCCAATCTCCGCGGACGTCAATTCAATGGTAACCGTCTGCTTCCGCA
CAACTGGTGCGGAACAAAAGCAAGTGGTCCGCTTCTTGCTATCTGCATGT
CATGACGGCGGGCTCGAAGTTGTGTCCGCACGGGCATCTTTGCGTCAGCT
CCTGCCTCCTCACACATGGCCGATGGGAGACATCACCATAGATGCGGGAT
GGGCCGGTCTGACCGGAAACCAGATTTGGATCGTTTCAAGCGTGCTCCCG
CTGCTGTTCGCTCCAATCTCCGCGGACGTCAATTCAATGGTAACCGTCTG
CTTCCGCACAACTGGTGCGGGAACAGTACGTGCGATCCTCGGAGATTGAG
AACAGTACGTGCGATCCTCGGAGATTGA
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