mRNA_H-canaliculatus_F_contig14110.3255.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14110.3255.1
Unique NamemRNA_H-canaliculatus_F_contig14110.3255.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14110.3255.1 vs. uniprot
Match: D8LE12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE12_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.590e-24
Identity = 61/100 (61.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 MQPPAKHIELLRTIYGTLRRREPNGCDEKELVGRVFHTSTSADKAVAGXXXXXXXXXXXXXXXX-------NGDAAVSSDSQPFSKTKVRGAVTLLKFAQ 279
            MQPPAKH ELLRTIYGTLRRREPNGCDEKELVGRVFH+S SA     G                        GDA    +S  FSKTKVRGAVTLLKFAQ
Sbjct:    1 MQPPAKHNELLRTIYGTLRRREPNGCDEKELVGRVFHSSMSASVERRGGGGDANAGTPAGVSVAXXXXXXNTGDAP---ESHRFSKTKVRGAVTLLKFAQ 97
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BLAST of mRNA_H-canaliculatus_F_contig14110.3255.1 vs. uniprot
Match: A0A6H5L5K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K1_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.700e-23
Identity = 57/97 (58.76%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 MQPPAKHIELLRTIYGTLRRREPNGCDEKELVGRVFHTSTSADKAVAGXXXXXXXXXXXXXXXXNGDAAVSSDSQP----FSKTKVRGAVTLLKFAQ 279
            MQPPAKH ELLRTIY TLRRREPNGCDEKELV RVFH S SA     G                 G    ++   P    FSKTKVRGAVTLLKFAQ
Sbjct:  260 MQPPAKHNELLRTIYSTLRRREPNGCDEKELVSRVFHASMSASAERRGRGGDVNAGTPAGVSVAGGGGEGTTGDAPESHRFSKTKVRGAVTLLKFAQ 356
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14110.3255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE12_ECTSI2.590e-2461.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5K1_9PHAE1.700e-2358.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14110contigH-canaliculatus_F_contig14110:248..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929162.8873177-CDS-H-canaliculatus_F_contig14110:247..4911622929162.8873177-CDS-H-canaliculatus_F_contig14110:247..491Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14110 248..491 -
1696845701.0958452-CDS-H-canaliculatus_F_contig14110:247..4911696845701.0958452-CDS-H-canaliculatus_F_contig14110:247..491Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14110 248..491 -
1622929162.8984463-CDS-H-canaliculatus_F_contig14110:955..9901622929162.8984463-CDS-H-canaliculatus_F_contig14110:955..990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14110 956..990 -
1696845701.105781-CDS-H-canaliculatus_F_contig14110:955..9901696845701.105781-CDS-H-canaliculatus_F_contig14110:955..990Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14110 956..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14110.3255.1prot_H-canaliculatus_F_contig14110.3255.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14110 248..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14110.3255.1

>prot_H-canaliculatus_F_contig14110.3255.1 ID=prot_H-canaliculatus_F_contig14110.3255.1|Name=mRNA_H-canaliculatus_F_contig14110.3255.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
MQPPAKHIELLRTIYGTLRRREPNGCDEKELVGRVFHTSTSADKAVAGGG
ARGGGGLAAAAAAANGDAAVSSDSQPFSKTKVRGAVTLLKFAQ
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mRNA from alignment at H-canaliculatus_F_contig14110:248..990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14110.3255.1 ID=mRNA_H-canaliculatus_F_contig14110.3255.1|Name=mRNA_H-canaliculatus_F_contig14110.3255.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=743bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14110:248..990- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCCCCCTGCGAAGCACATCGAGCTCCTGCGGTGAGACATGCTTTG
GCTTCGACTGGTGTTGTTGCGGGCATTTTCCGGGGTAGGCGGGGGGGGCG
CGCAAGGCTGGGTCGATCCCCCCCCCCTCCCCTCGAGCCCAAAGCAGATC
CCGAGAGCGGCAATAAGACGGGTTTTCATGGAGAGAAGAGGGCGTTTTGC
GTCGGCGTCCGGACGGCCTCGTCAGTCTTCGAGGTAGAGAGGGGGGCAAG
GACGGAAGGAGAGGAGACGAGAGAGAAACAGGGGCAAAGGTAGAAGGAGA
GAAAGAGGATGGCTTTCTGAGGACGAACCCCTTGGAAGGCGTTCGTTTTT
TGGCAGCGTGGGATGGATAGATGGAACCCTCTCCGTCGCAGCGACAGCAT
CGATAGCAGCAACGACGTAAACTTCATCGACCGAAAACGCCGGCCACCGC
CGTTGCCGCCGCCCCCGCCCCCGCCGCCGCTGACTACCCCACCATGCAGC
ACGATATACGGCACCCTCCGCCGCCGGGAGCCCAACGGCTGCGACGAAAA
AGAACTGGTGGGGAGGGTTTTCCACACCTCCACGTCGGCCGACAAGGCCG
TGGCCGGGGGCGGCGCGAGGGGGGGAGGGGGACTCGCGGCCGCCGCCGCT
GCTGCCAACGGCGATGCCGCCGTCTCTTCCGACAGCCAGCCTTTCTCCAA
GACGAAAGTCCGCGGCGCCGTGACGCTCCTCAAGTTCGCCCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14110:248..990-

>mRNA_H-canaliculatus_F_contig14110.3255.1 ID=mRNA_H-canaliculatus_F_contig14110.3255.1|Name=mRNA_H-canaliculatus_F_contig14110.3255.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14110:248..990- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCCCCCTGCGAAGCACATCGAGCTCCTGCGATGCAGCCCCCTGCG
AAGCACATCGAGCTCCTGCGCACGATATACGGCACCCTCCGCCGCCGGGA
GCCCAACGGCTGCGACGAAAAAGAACTGGTGGGGAGGGTTTTCCACACCT
CCACGTCGGCCGACAAGGCCGTGGCCGGGGGCGGCGCGAGGGGGGGAGGG
GGACTCGCGGCCGCCGCCGCTGCTGCCAACGGCGATGCCGCCGTCTCTTC
CGACAGCCAGCCTTTCTCCAAGACGAAAGTCCGCGGCGCCGTGACGCTCC
TCAAGTTCGCCCAGCACGATATACGGCACCCTCCGCCGCCGGGAGCCCAA
CGGCTGCGACGAAAAAGAACTGGTGGGGAGGGTTTTCCACACCTCCACGT
CGGCCGACAAGGCCGTGGCCGGGGGCGGCGCGAGGGGGGGAGGGGGACTC
GCGGCCGCCGCCGCTGCTGCCAACGGCGATGCCGCCGTCTCTTCCGACAG
CCAGCCTTTCTCCAAGACGAAAGTCCGCGGCGCCGTGACGCTCCTCAAGT
TCGCCCAG
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