mRNA_H-canaliculatus_F_contig14102.3252.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14102.3252.1
Unique NamemRNA_H-canaliculatus_F_contig14102.3252.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14102.3252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14102contigH-canaliculatus_F_contig14102:385..1958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929162.3734567-CDS-H-canaliculatus_F_contig14102:385..5431622929162.3734567-CDS-H-canaliculatus_F_contig14102:385..543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14102 386..543 -
1696845700.8409417-CDS-H-canaliculatus_F_contig14102:385..5431696845700.8409417-CDS-H-canaliculatus_F_contig14102:385..543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14102 386..543 -
1622929162.3917696-CDS-H-canaliculatus_F_contig14102:1762..19581622929162.3917696-CDS-H-canaliculatus_F_contig14102:1762..1958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14102 1763..1958 -
1696845700.8531742-CDS-H-canaliculatus_F_contig14102:1762..19581696845700.8531742-CDS-H-canaliculatus_F_contig14102:1762..1958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14102 1763..1958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14102.3252.1prot_H-canaliculatus_F_contig14102.3252.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14102 386..1958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14102.3252.1

>prot_H-canaliculatus_F_contig14102.3252.1 ID=prot_H-canaliculatus_F_contig14102.3252.1|Name=mRNA_H-canaliculatus_F_contig14102.3252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
SSQRIPFGSSALRCSSTRRWMYSTRRSPRCRCPCPRSVLTRGRRACGLRS
TRAEHHPGATRRSQTGDDSDKDFSMTAPAQKETRAPVEQILAQETAPDVD
AGVSSACGAVLRIDDSDV
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mRNA from alignment at H-canaliculatus_F_contig14102:385..1958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14102.3252.1 ID=mRNA_H-canaliculatus_F_contig14102.3252.1|Name=mRNA_H-canaliculatus_F_contig14102.3252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1574bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14102:385..1958- (Hapterophycus canaliculatus Oshoro5f female)
TCGTCGCAACGAATCCCATTTGGCAGTTCTGCACTCCGGTGTTCCTCCAC
GCGGCGCTGGATGTATAGTACACGGAGATCCCCCCGCTGCAGGTGCCCGT
GTCCTCGCTCAGTCTTGACACGAGGAAGACGCGCCTGTGGGTTACGGTCC
ACGCGAGCGGAGCATCATCCAGGAGCGACAAGGCGTTCACAGACAGGTGC
AGCTTAGTTCGTCGAGCTTACCCTTTCCCGTAGTCACCCTACCGATGGCG
AAGAGGTTCAAAGCGGAAAGTCCGTGTACGAAGGCGCGAATTTGGTCTTG
ATATTCTGTTCGCAGTTGCCGGAATCGCGAAGCATGTTTTCCTCGCGTTG
GACAAGATAGTTGGACACGGTCTCTGCCGTGCAGCAGAATACGAGGCATT
TTGTCCTCGTCTGTCTGCCCTTTTTGCGACTGTTTCGCTTCTGGGTGAGG
TGTAAATTCTATCAGTCCGTCCCCGCCCCCGTGTTTACTTCACTACAGCA
GCATCTGGTATCAGCTTCAAGTGTTCATGACCAACCCTCGACGCACCTCG
CACGGTGATGAACCTGCAACCGACGGGTTTCATCCGACCCTAGACCGTAA
AGTATATAGCTCGCTACTACGACGCCTCCTACGCGTTACTCTTTTATTTG
CAACACCCTGGTCGCATGTGCGCCTGCCCTCGTTAACTCCGTGTCTCAAC
GTTTAGTCCGTGGACACGGGCAGGCTCGGTCGAACATTCCACGTCCAACA
GAGTCAAAAGCCTGAACCCACGTGTTGGCCGTGTGGGTCGGACTACAACA
TGCGGCAAGAGAAAAGGCTGCTTCGAATTCTACCCTTGCAAGTGCTTTTC
ATCACGTGGTGCGTGGACCGAGCCGCCATGCGTTATCACAGATCCACCTT
TAGATCCTGTGTCTCGCGTTATTTTGCTGAATGCAACAACTTCGTGCTAT
ACGCTCGCGATAAACGGTTGCCGGAATTTTGAAGGTGACGACTCAGACAA
GGATTTTTCCATGACGGCGCCCGCGCAAAAGGAGACGAGGGCTCCGGTGG
AGCAAATCCTCGCTCAAGAGACCGCCCCGGATGTGGACGCCGAGCTCTGC
TTGCGGCTCAGTCCTTCGCATCGATGACAGCGACGTGGGATCGCTTCTTG
CGGACATCAACTGTGACCGGATGGGGTTTCGCAGGGGAAGGGGGGCGTGG
AGTTTTTTTTCTTGGAACCACCGGATGTTTTGTTCGACCAGTCTTGACAT
TTTTTCAGCGAAAATGTTGCATGATGTGTATCTGGTGTAGCGTGAAAGCG
ACGTCGCGCCGAAACGCAGGTACAGACTTGTCTTAACTTCGGACATGAAC
ACCGCCTGGGCTTGCAACAACTTCGTGCTATACGCTCGCGATAAACGGTT
GCCGGATTTTTGAAGGTGACGACTCAGACAAGGATTTTTCCATGACGGCG
CCCGCGCAAAAGGAGACGAGGGCTCCGGTGGAGCAAATCCTCGCTCAAGA
GACCGCCCCGGATGTGGACGCCGGTGTGAGCTCTGCTTGCGGCGCAGTCC
TTCGCATCGATGACAGCGACGTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14102:385..1958-

>mRNA_H-canaliculatus_F_contig14102.3252.1 ID=mRNA_H-canaliculatus_F_contig14102.3252.1|Name=mRNA_H-canaliculatus_F_contig14102.3252.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14102:385..1958- (Hapterophycus canaliculatus Oshoro5f female)
TCGTCGCAACGAATCCCATTTGGCAGTTCTGCACTCCGGTGTTCCTCCAC
GCGGCGCTGGATGTATAGTACACGGAGATCCCCCCGCTGCAGGTGCCCGT
GTCCTCGCTCAGTCTTGACACGAGGAAGACGCGCCTGTGGGTTACGGTCC
ACGCGAGCGGAGCATCATCCAGGAGCGACAAGGCGTTCACAGACAGTCGT
CGCAACGAATCCCATTTGGCAGTTCTGCACTCCGGTGTTCCTCCACGCGG
CGCTGGATGTATAGTACACGGAGATCCCCCCGCTGCAGGTGCCCGTGTCC
TCGCTCAGTCTTGACACGAGGAAGACGCGCCTGTGGGTTACGGTCCACGC
GAGCGGAGCATCATCCAGGAGCGACAAGGCGTTCACAGACAGGTGACGAC
TCAGACAAGGATTTTTCCATGACGGCGCCCGCGCAAAAGGAGACGAGGGC
TCCGGTGGAGCAAATCCTCGCTCAAGAGACCGCCCCGGATGTGGACGCCG
GTGTGAGCTCTGCTTGCGGCGCAGTCCTTCGCATCGATGACAGCGACGTG
GTGACGACTCAGACAAGGATTTTTCCATGACGGCGCCCGCGCAAAAGGAG
ACGAGGGCTCCGGTGGAGCAAATCCTCGCTCAAGAGACCGCCCCGGATGT
GGACGCCGGTGTGAGCTCTGCTTGCGGCGCAGTCCTTCGCATCGATGACA
GCGACGTG
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