mRNA_H-canaliculatus_F_contig1410.3250.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1410.3250.1
Unique NamemRNA_H-canaliculatus_F_contig1410.3250.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1410.3250.1 vs. uniprot
Match: D7FVK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK7_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.690e-54
Identity = 97/130 (74.62%), Postives = 109/130 (83.85%), Query Frame = 1 
Query:    1 MAPSETTLNAEAIARAVTSLPAAVFIGDVSGPLDAEASALAEKLDPKLEEIKADISATLELCHSGNEPSVEHWQEDIHAARSGVQSIKAMAMSLLNGTYVAPRARERLHREASLSSFGGVTGSGTAAGEP 390
            MAPSE  LNAEAIARAVT LP+AVF+G VSG LDAEASAL +KLDPKLEEIK DI+A LELCHSGNEPS   WQ+D+   R+GV+SIK +A+SLLN TYVAPRARERLHRE SLSSFGG T +G A G+P
Sbjct:    1 MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASALVDKLDPKLEEIKTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFGGSTRAGGALGQP 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1410.3250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVK7_ECTSI3.690e-5474.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1410contigH-canaliculatus_F_contig1410:19635..23356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003660.1
Exons4
Model size1643
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1410.3250.1prot_H-canaliculatus_F_contig1410.3250.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1410 19635..22118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929162.2126257-CDS-H-canaliculatus_F_contig1410:19634..197901622929162.2126257-CDS-H-canaliculatus_F_contig1410:19634..19790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1410 19635..19790 +
1696845700.7343543-CDS-H-canaliculatus_F_contig1410:19634..197901696845700.7343543-CDS-H-canaliculatus_F_contig1410:19634..19790Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1410 19635..19790 +
1622929162.2242389-CDS-H-canaliculatus_F_contig1410:20857..209511622929162.2242389-CDS-H-canaliculatus_F_contig1410:20857..20951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1410 20858..20951 +
1696845700.7446558-CDS-H-canaliculatus_F_contig1410:20857..209511696845700.7446558-CDS-H-canaliculatus_F_contig1410:20857..20951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1410 20858..20951 +
1622929162.2390022-CDS-H-canaliculatus_F_contig1410:21669..217371622929162.2390022-CDS-H-canaliculatus_F_contig1410:21669..21737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1410 21670..21737 +
1696845700.7539558-CDS-H-canaliculatus_F_contig1410:21669..217371696845700.7539558-CDS-H-canaliculatus_F_contig1410:21669..21737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1410 21670..21737 +
1622929162.2494438-CDS-H-canaliculatus_F_contig1410:22031..221181622929162.2494438-CDS-H-canaliculatus_F_contig1410:22031..22118Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1410 22032..22118 +
1696845700.7624817-CDS-H-canaliculatus_F_contig1410:22031..221181696845700.7624817-CDS-H-canaliculatus_F_contig1410:22031..22118Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1410 22032..22118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929162.2596042-UTR-H-canaliculatus_F_contig1410:22118..233561622929162.2596042-UTR-H-canaliculatus_F_contig1410:22118..23356Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1410 22119..23356 +
1696845700.7736495-UTR-H-canaliculatus_F_contig1410:22118..233561696845700.7736495-UTR-H-canaliculatus_F_contig1410:22118..23356Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1410 22119..23356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1410.3250.1

>prot_H-canaliculatus_F_contig1410.3250.1 ID=prot_H-canaliculatus_F_contig1410.3250.1|Name=mRNA_H-canaliculatus_F_contig1410.3250.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp
MAPSETTLNAEAIARAVTSLPAAVFIGDVSGPLDAEASALAEKLDPKLEE
IKADISATLELCHSGNEPSVEHWQEDIHAARSGVQSIKAMAMSLLNGTYV
APRARERLHREASLSSFGGVTGSGTAAGEPILEL*
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mRNA from alignment at H-canaliculatus_F_contig1410:19635..23356+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1410.3250.1 ID=mRNA_H-canaliculatus_F_contig1410.3250.1|Name=mRNA_H-canaliculatus_F_contig1410.3250.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3722bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1410:19635..23356+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACCCTCTGAGACAACTCTTAACGCAGAGGCAATTGCCCGTGCCGT
GACAAGTCTCCCCGCAGCAGTGTTCATCGGAGACGTGAGCGGACCTTTGG
ATGCTGAAGCCAGCGCGCTGGCTGAAAAATTAGACCCGAAGCTTGAGGAG
ATCAAGGTTGGAGATCAGTTTTGCGGTTCATGTGGAAATCCTTGCTTTTT
TCGCATTATAAGGGATATTACACCCTGCCCCCCCGCACTGGAGTAATCAA
CTTCTGTACTTCATTTCACAAAAAACAAGTCGATGGACACCTTTCCTCTG
GGTCGCTATGTTGTACTTGCACGAAGCATTGAGCATCATTTGTCTCAGCG
GAGGGTGAAAGTATTCCTTTGGTGTTGTTGACTCTTGCAAAGAAAAGCTT
CAATGCCCCCGTCGGCTCTTCTCTCCAGGCCTGTGAAGCTGCGGCCTTGA
ATGAGGGATCATGAGGGCCCACACAATACATCTACTGCTGGAAATCTGTG
GGTTTTCTCCACAAGACGTTTTTGTGTTGTTGATGTTAGTGTTCCTGTCG
CCACTGCTTCTCGCTGTCATTCGCACACCTTCAAAACATTTCTCCGGAAT
GGATTTCGTGGCCATAAGCCCCGTGAAGAACAAGTCCAAAGTCCAAAGTC
GGTTTCATCTCTATATACCCAACACCTCCTCCCATGTAGGTCTCGTCTCG
ATCAATTATGTCATGGCCACCTCCGGAGTTGTTTCATCGCCGTAAACCTT
GTCGAGACCAACTCTGCTGCTGGTTTGGTGGCCATCAATGTCGTCAAGGC
CCGCGCTGGAATCAGTTGGTGGCCGTCAGCCATGTGAAGACCCACTCTGG
GCTTGGCCTCGTGACCATAACCCGTGTTAAGACCAACTCCAGACTTGGCT
CAGGGGTCATCAGCCGTGCCACGACACGGTAGCTATCAACGACTTCAAGA
CCACCTCCAGAGTTGTTGTCGTGCCTATCCGCCATGCCCAAGTCCATCTC
CGGAGTTGGTTTGGTGGCTCATCATCCGTGTCAAGACTAGCTCCCGACGT
GGTTTTGTGGCCATCAACCATGTCAGGACCAACTAGAGTCATTTTGGCTG
CCGTAAGTCGTGGCAAGACCGACTCCGGACTTGCGTCTAGGACCAACTCT
GCTGTTTGCGATAAGTGACCATAGATGATCGATGACGAACCACTGTGCTG
TTCCTGTATACTCCCTTCGTCAGGCAGACATCAGCGCTACGTTGGAGCTA
TGCCACTCCGGCAACGAGCCCTCTGTTGAACACTGGCAGGAGGACATCCA
CGCCGCAAGATCAGGCGGTGAGGGACACTTCCTTTTGCACCCGTTATATT
GCTCAGTATTAGGACACGGGCCTTCCGCCTGACTAGCAAATAGTGATCAG
TTGCAGAGGGGATGGGCAAATGGTTCATATCACGATTTTTCGTACGATTG
GCTCTTGCAGCACCATCATCCCGCGGCTTGATTGTCGCTGTGGAGATGTC
TCTTCACCGGTCTCCTCGCAGAAGGCCTTTTTCTCCCCGACGCGCCTTGC
GATTGCACATGCGCTTCCTTTTCTTGGAAGAAGCTCGATATCGTATAGGA
ATCCCTTCTACTCACTCGCTATGGGTCTAAGGAGTTCCGCTTTGAAAGCG
TTGTCTTTGCTCCAAAGGCGAGGGTGGAGTCGCGAAAGAGCAGTTGCTCC
CACCCCGTCAGTACAGGCATCCCGATGCCGTCATCGGCGTTACAACCTTG
TGGCCTTGGCTCGCGGTACCGGCTCTTCCGCATCTTGTATTGGGCCCCGG
TATTAGATCACGATAGCTCCAGTACGATCTCCCCAGCGTTTGCTGTCCAT
TTCTAACGTCCGCTGCTTTCCAGGCGAAAAGGACGCCGATCCACCGACTT
TTCGGCTCATGTGTTCAGTTTGCCTTGTTTTTCGTTCGCTGCACCCAAAC
GAAGACCCGGAGGAAAAGCTGTAGGCTTGTCGTTCGCATCTGTTGGCAAA
CCGTTTGCTCTGTGCGCTTCGTGCTGCTCGTCCAGTGCAATCAATCAAGG
CCATGGCGATGAGCTTGCTGAACGGCACGTACGTGGCACCTCGAGCACGC
GAGGTAAGAATATTCTTGGGAGCTCGAGGTAAGAATATTCTTGGGAGCAT
AACAGTGATACCGGACATGATCATATCCATCATATCCGGCGTTTGATCTG
TTTCCAGCGCTCGTGTACAGATCCCCGTGTACGGTCGTAAAGCGGGCCTT
CATCAAAATTATAGTCTGACTTGAGCCCTTTGACCTGGTTCTCAGGTACC
TGTGTGCTTTGTGCTGTGTTTTGTAAGCTCCCAGCCCCTGCCCACTTTGG
TTTCCCCTTTCTTCTCCTTCGACGCCGTTTTCGCTTGCGTTGGACAGCGC
CTCCACCGAGAAGCGTCCCTTTCGTCTTTCGGGGGCGTTACGGGATCCGG
GACCGCTGCTGGGGAGCCCATTCTAGAGCTGTAGTTGCTTCCAGGCAACT
GTGTCTGACGCGCCTTTCGTTTTTACTTCGATGTATTTGAGATCTGGTTT
GGAGTGTTCAACTCTGTGCCGTGAAGGAATTCCCCTGGGCTGGGTGCAAG
ACGGTGTTCGGCGGCGATAGCGCTGTCTACTCGACAGGATGGCTGTAAGA
AGGGCGGGCTGAAGAGTATCGATGTAAAAAGCTCTCGTAGGGCGTTGTTT
GCGATGACGTGGGCGCGAAGGGCGACTAGTGGTCCGCCATATGCTCACGA
GGGAAGCGCATCGGGTCGAGTTCCGCCTCTTAGTGCCCCTCCTAAGTGCA
AACAACTCAGAGAAACTCTGACGGGGTGATGTATCGGTACGGGGCATGGA
GATGTGGTCATTCCATGAGGTGCCATAGTTTTTGAAGTGCAGTATTTTTT
AGTTCAATCCCTCGAATGACGCACGGTAGAGGAGAGACTGCTTGCAATCG
CCTTCCGCAGGTCCGGCGCCCAAACCTGACCTGCGCTTCGACGGCATGTG
GTGTTGCAACGTGCCGCTGCCGTCACATGCCTTTGCCGTTGGGGTCGAGA
AATGTGGGGCTGATTGAGTGGGAGTGGTATTCGTCCGGCGCTTAACCTTT
GAACCAATGGTGCAGATACGGGTATAAGGGAGTTGAAGGCGTATTAATCT
AGTCGAGGAGACATGGGAGCTCTGGGCCGCAACCTCCACGGTGATCGGCG
AAAGACTGATCAGGTATTAGCACGGCGAACGGGTGTGTACCTCCTCAGCC
TTTCACCAATGACCATAGAGAGAAGCCATAACCGTTCCTGCAAGTCGAGG
CCCAAGCTCGGGCTTTCATACTTCAAGGCCGGCGCAGGATCCCATTCGCA
AGTGGTTCGTCGCAACTGCAGGAGTTCATGGAGACGGCTGGGCGATGGGG
GCGATGAATATTTGCGGTAGTTTCGCCATGGAGCCTTTGCGTTTGGGACA
GCAGATCAGGTCATCATCGACAGAAGCACGGGTATTTTGAAGTAAGGCCG
ATGCTGACATCTTGCCGCATGCACGCTACGGCTCGTCGCTACGTGAGGAT
TGGGCAAAGAGCGGTTACCTAAATGCGCAATTTGTGGTGCCTCTAACAAT
GGTTTTTGTCAATTACAGCCGAAAGCCGTGGGGTCTCGCTTGTGAAGCAG
CGAGGACGAGGTGGCATGTCAGGAGGCAGAAGTAAGCTATGTACACGAGC
CATCAAATCAGTTACATTTCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1410:19635..23356+

>mRNA_H-canaliculatus_F_contig1410.3250.1 ID=mRNA_H-canaliculatus_F_contig1410.3250.1|Name=mRNA_H-canaliculatus_F_contig1410.3250.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1410:19635..23356+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACCCTCTGAGACAACTCTTAACGCAGAGGCAATTGCCCGTGCCGT
GACAAGTCTCCCCGCAGCAGTGTTCATCGGAGACGTGAGCGGACCTTTGG
ATGCTGAAGCCAGCGCGCTGGCTGAAAAATTAGACCCGAAGCTTGAGGAG
ATCAAGATGGCACCCTCTGAGACAACTCTTAACGCAGAGGCAATTGCCCG
TGCCGTGACAAGTCTCCCCGCAGCAGTGTTCATCGGAGACGTGAGCGGAC
CTTTGGATGCTGAAGCCAGCGCGCTGGCTGAAAAATTAGACCCGAAGCTT
GAGGAGATCAAGGCAGACATCAGCGCTACGTTGGAGCTATGCCACTCCGG
CAACGAGCCCTCTGTTGAACACTGGCAGGAGGACATCCACGCCGCAAGAT
CAGGCGGCAGACATCAGCGCTACGTTGGAGCTATGCCACTCCGGCAACGA
GCCCTCTGTTGAACACTGGCAGGAGGACATCCACGCCGCAAGATCAGGCG
TGCAATCAATCAAGGCCATGGCGATGAGCTTGCTGAACGGCACGTACGTG
GCACCTCGAGCACGCGAGTGCAATCAATCAAGGCCATGGCGATGAGCTTG
CTGAACGGCACGTACGTGGCACCTCGAGCACGCGAGCGCCTCCACCGAGA
AGCGTCCCTTTCGTCTTTCGGGGGCGTTACGGGATCCGGGACCGCTGCTG
GGGAGCCCATTCTAGAGCTGTAGCGCCTCCACCGAGAAGCGTCCCTTTCG
TCTTTCGGGGGCGTTACGGGATCCGGGACCGCTGCTGGGGAGCCCATTCT
AGAGCTGTAG
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