mRNA_H-canaliculatus_F_contig10306.325.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10306.325.1
Unique NamemRNA_H-canaliculatus_F_contig10306.325.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: A0A6H5JR06_9PHAE (FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.800e-48
Identity = 98/131 (74.81%), Postives = 103/131 (78.63%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFPLPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIPLAQGGG-AGDGASAXXXXXXXPLPG 391
            DHP Y KYFKMLKMG+PRGAALQKMAT+G DQAILDTPDAM PL  +E   AAAAAPSMVAAKDHPDY KYFKMLKMG+PRGAALQKMAT+G DQAILDTPDALIPLA     A D           PLPG
Sbjct: 2774 DHPDYHKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDAMLPLAETE-GGAAAAAPSMVAAKDHPDYEKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALIPLAPAPSPATDTTPGKGIPTPPPLPG 2903
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: D8LT97_ECTSI (Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 3.300e-48
Identity = 97/135 (71.85%), Postives = 104/135 (77.04%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFPLPGSEPAAAAA---AAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIPLAQGGGAGDGASAXXXXXXXPL-PGM 394
            DHP Y KYFKMLKMG+PRGAALQKMAT+G DQAILDTPDAM PL  +E  AAAA    APSMVAAKDHPDY KYFKMLKMG+PRGAALQKMAT+G DQAILDTPDAL+PLA        A+        PL PGM
Sbjct: 1885 DHPDYQKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDAMLPLAETEGGAAAAXXATAPSMVAAKDHPDYQKYFKMLKMGLPRGAALQKMATEGKDQAILDTPDALVPLAPAPSPATDATPGKGIPTPPLLPGM 2019
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: A0A1V9ZW19_9STRA (Formin-homology 2 domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW19_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.820e-28
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFPLPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIPLA 325
            +HP Y+KYFK+LKMGMP      K +++G+D AILDTPDA+ PLP  E        P MV  K+HPDY KYFK++KMGMP      KM  +GVD  +L TPD L+PLA
Sbjct:  191 EHPDYVKYFKLLKMGMPLEHVKLKASSEGIDTAILDTPDAIIPLPALE----VPQGPVMVPIKEHPDYAKYFKLMKMGMPAMQVELKMNAEGVDATVLSTPDKLVPLA 294
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: A0A1V9Y9P9_9STRA (Formin-homology 2 domain-containing protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9P9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.430e-28
Identity = 63/106 (59.43%), Postives = 73/106 (68.87%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFPLPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIP 319
            DHP + KYFK+LKMGMP      K A++GVD A+LDTPD   PL  +E  A+A A P MVA KDHP Y KYFK+LKMGMP      KM  +GVD A+L TPDALIP
Sbjct:  899 DHPTFAKYFKLLKMGMPLEHVKLKAASEGVDAAVLDTPDRELPLATAE--ASAPAGPPMVATKDHPKYAKYFKLLKMGMPSMQVELKMQAEGVDPAVLATPDALIP 1002
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: A0A024TTB1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTB1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.380e-23
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFP--LPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIP 319
            DHP Y KYFK++KMGMP      K++++G+D AILDTPDA+ P  L     A+   AAP MV   DHP Y KYFK+ KMGMP      KM  +G+D  +LD+PD  IP
Sbjct: 1208 DHPTYAKYFKLMKMGMPMVQIQLKVSSEGLDPAILDTPDALLPEDLSNQADASKKDAAPKMVRVADHPSYAKYFKLQKMGMPPPQIQLKMKAEGLDSDLLDSPDKEIP 1315
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: A0A3R6ZMD3_9STRA (GBD/FH3 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZMD3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.500e-23
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFP--LPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIP 319
            DHP Y KYFK++KMGMP      K++++G+D AILDTPDA+ P  L     A+   AAP MV   DHP Y KYFK+ KMGMP      KM  +G+D  +LD+PD  IP
Sbjct: 1111 DHPTYAKYFKLMKMGMPMVQIQLKVSSEGLDPAILDTPDALLPEDLSNHADASKKDAAPKMVRVADHPSYAKYFKLQKMGMPPPQIQLKMKAEGLDSDLLDSPDKEIP 1218
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: K3X7A1_GLOUD (FH2 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7A1_GLOUD)

HSP 1 Score: 100 bits (250), Expect = 9.480e-22
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFPLPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIPLAQGGGAG 343
            D   Y K+FK+ KMGMP      KM+ +G+D ++LDTPDA  P+PGS+PAAAA+    ++A KD P+Y K+FK++KMGMP      KM+  G++  +LDTPDA  P  + G  G
Sbjct:   38 DDEKYAKFFKLAKMGMPAEQIKLKMSAEGLDPSLLDTPDA--PMPGSQPAAAAS---QVMAVKDDPEYEKFFKLIKMGMPAEQVKMKMSASGLNADLLDTPDAPSPNQKTGAGG 146
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: A0A485K4D8_9STRA (Aste57867_737 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4D8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.870e-21
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFP--LPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIP 319
            +HP Y K+FK++KMGMP      K +++G++ AILDTPDAM P  L G+  A A  A P++V   DHP Y KYFK+ KMGMP      KM  +G++  +L++PD  IP
Sbjct: 1243 EHPSYAKFFKLMKMGMPLEQIKLKASSEGLNPAILDTPDAMLPEVLAGAADADAKNAKPTLVKVSDHPSYAKYFKLQKMGMPLPQIQLKMNAEGLNPDLLESPDKEIP 1350
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: A0A1V9YFX1_9STRA (Formin-homology 2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFX1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.490e-20
Identity = 50/106 (47.17%), Postives = 63/106 (59.43%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDAMFPLPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDTPDALIP 319
            DHP Y K+FK+ KMGMP      KM  +G+D  +L TPD + P     PA      P+ V  KDHPDY KY K+ KMGMP      KM  +G+D A+L TPDA++P
Sbjct:  111 DHPSYAKFFKLQKMGMPPPQIELKMKAEGLDTTLLATPDQLIPEKAETPAP-----PAEVLVKDHPDYAKYLKLQKMGMPPPQIELKMKAEGLDAALLATPDAVVP 211
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BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Match: A0A7S1G5T6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5T6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.570e-20
Identity = 58/110 (52.73%), Postives = 70/110 (63.64%), Query Frame = 2 
Query:    2 DHPGYLKYFKMLKMGMPRGAALQKMATDGVDQAILD-TPDAMFPLPGSEPAAAAAAAPSMVAAKDHPDYLKYFKMLKMGMPRGAALQKMATDGVDQAILDT-PDALIPLA 325
            DHP + KYFKMLK+G+P GAA  KM  DGVD ++LD  PD   P  GS         P +   KDHP+Y KYFKMLK+G+P GAA  KM  DG+D AILD  P+  +P A
Sbjct:  421 DHPTFGKYFKMLKIGLPAGAAKHKMEQDGVDPSVLDFDPDKPRPRTGS------VRGPPL---KDHPEYGKYFKMLKVGLPVGAAKHKMEQDGLDPAILDCDPNKPMPSA 521
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10306.325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR06_9PHAE1.800e-4874.81FMN protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LT97_ECTSI3.300e-4871.85Formin-like 2 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A1V9ZW19_9STRA4.820e-2853.70Formin-homology 2 domain-containing protein (Fragm... [more]
A0A1V9Y9P9_9STRA6.430e-2859.43Formin-homology 2 domain-containing protein (Fragm... [more]
A0A024TTB1_9STRA3.380e-2350.93Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A3R6ZMD3_9STRA4.500e-2350.93GBD/FH3 domain-containing protein n=1 Tax=Aphanomy... [more]
K3X7A1_GLOUD9.480e-2247.37FH2 domain-containing protein n=1 Tax=Globisporang... [more]
A0A485K4D8_9STRA8.870e-2147.22Aste57867_737 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A1V9YFX1_9STRA1.490e-2047.17Formin-homology 2 domain-containing protein n=1 Ta... [more]
A0A7S1G5T6_9STRA1.570e-2052.73Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10306contigH-canaliculatus_F_contig10306:3376..3858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928667.3776827-CDS-H-canaliculatus_F_contig10306:3375..38581622928667.3776827-CDS-H-canaliculatus_F_contig10306:3375..3858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10306 3376..3858 +
1696845519.6881561-CDS-H-canaliculatus_F_contig10306:3375..38581696845519.6881561-CDS-H-canaliculatus_F_contig10306:3375..3858Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10306 3376..3858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10306.325.1prot_H-canaliculatus_F_contig10306.325.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10306 3376..3858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10306.325.1

>prot_H-canaliculatus_F_contig10306.325.1 ID=prot_H-canaliculatus_F_contig10306.325.1|Name=mRNA_H-canaliculatus_F_contig10306.325.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=161bp
GPSRLFKVFQDAQDGHAEGRGAAENGDRWRGPGDSGHAGCDVPVARVRAG
RGGRCCTEYGGGEGPPGLLEVLQDAQDGHAEGRGAAEDGHRWRGPGDSGH
PRRAHTSRAGWWSRRRRFGRRNPAAAPPPGDGRSDPASSTTARNGRRGDP
AAAAAAGDGRR
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mRNA from alignment at H-canaliculatus_F_contig10306:3376..3858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10306.325.1 ID=mRNA_H-canaliculatus_F_contig10306.325.1|Name=mRNA_H-canaliculatus_F_contig10306.325.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=483bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10306:3376..3858+ (Hapterophycus canaliculatus Oshoro5f female)
GGACCATCCAGGTTATTTAAAGTATTTCAAGATGCTCAAGATGGGCATGC
CGAGGGGCGCGGCGCTGCAGAAAATGGCGACAGATGGCGTGGACCAGGCG
ATTCTGGACACGCCGGATGCGATGTTCCCGTTGCCAGGGTCAGAGCCGGC
CGCGGCGGCCGCTGCTGCACCGAGTATGGTGGCGGCGAAGGACCACCCGG
ACTACTTGAAGTACTTCAAGATGCTCAAGATGGGCATGCCGAGGGGCGCG
GCGCTGCAGAAGATGGCCACAGATGGCGTGGACCAGGCGATTCTGGACAC
CCCCGACGCGCTCATACCTCTCGCGCAGGGTGGTGGAGCCGGCGACGGCG
CTTCGGCAGGAGGAATCCCGCCGCCGCCCCCCCTCCCGGGGATGGGAGGA
GCGATCCCGCGTCCTCCACCACTGCCAGGAATGGGAGGAGGGGGGATCCC
GCCGCCGCCGCCGCTGCCGGGGATGGGCGGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10306:3376..3858+

>mRNA_H-canaliculatus_F_contig10306.325.1 ID=mRNA_H-canaliculatus_F_contig10306.325.1|Name=mRNA_H-canaliculatus_F_contig10306.325.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=966bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10306:3376..3858+ (Hapterophycus canaliculatus Oshoro5f female)
GGACCATCCAGGTTATTTAAAGTATTTCAAGATGCTCAAGATGGGCATGC
CGAGGGGCGCGGCGCTGCAGAAAATGGCGACAGATGGCGTGGACCAGGCG
ATTCTGGACACGCCGGATGCGATGTTCCCGTTGCCAGGGTCAGAGCCGGC
CGCGGCGGCCGCTGCTGCACCGAGTATGGTGGCGGCGAAGGACCACCCGG
ACTACTTGAAGTACTTCAAGATGCTCAAGATGGGCATGCCGAGGGGCGCG
GCGCTGCAGAAGATGGCCACAGATGGCGTGGACCAGGCGATTCTGGACAC
CCCCGACGCGCTCATACCTCTCGCGCAGGGTGGTGGAGCCGGCGACGGCG
CTTCGGCAGGAGGAATCCCGCCGCCGCCCCCCCTCCCGGGGATGGGAGGA
GCGATCCCGCGTCCTCCACCACTGCCAGGAATGGGAGGAGGGGGGATCCC
GCCGCCGCCGCCGCTGCCGGGGATGGGCGGAGGGGACCATCCAGGTTATT
TAAAGTATTTCAAGATGCTCAAGATGGGCATGCCGAGGGGCGCGGCGCTG
CAGAAAATGGCGACAGATGGCGTGGACCAGGCGATTCTGGACACGCCGGA
TGCGATGTTCCCGTTGCCAGGGTCAGAGCCGGCCGCGGCGGCCGCTGCTG
CACCGAGTATGGTGGCGGCGAAGGACCACCCGGACTACTTGAAGTACTTC
AAGATGCTCAAGATGGGCATGCCGAGGGGCGCGGCGCTGCAGAAGATGGC
CACAGATGGCGTGGACCAGGCGATTCTGGACACCCCCGACGCGCTCATAC
CTCTCGCGCAGGGTGGTGGAGCCGGCGACGGCGCTTCGGCAGGAGGAATC
CCGCCGCCGCCCCCCCTCCCGGGGATGGGAGGAGCGATCCCGCGTCCTCC
ACCACTGCCAGGAATGGGAGGAGGGGGGATCCCGCCGCCGCCGCCGCTGC
CGGGGATGGGCGGAGG
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