mRNA_H-canaliculatus_F_contig1409.3233.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1409.3233.1
Unique NamemRNA_H-canaliculatus_F_contig1409.3233.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1409.3233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1409contigH-canaliculatus_F_contig1409:7158..7743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size586
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1409.3233.1prot_H-canaliculatus_F_contig1409.3233.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1409 7208..7558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.78826-UTR-H-canaliculatus_F_contig1409:7157..72071622929159.78826-UTR-H-canaliculatus_F_contig1409:7157..7207Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1409 7158..7207 +
1696845699.5822818-UTR-H-canaliculatus_F_contig1409:7157..72071696845699.5822818-UTR-H-canaliculatus_F_contig1409:7157..7207Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1409 7158..7207 +
1622929159.8208916-UTR-H-canaliculatus_F_contig1409:7558..77431622929159.8208916-UTR-H-canaliculatus_F_contig1409:7558..7743Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1409 7559..7743 +
1696845699.606403-UTR-H-canaliculatus_F_contig1409:7558..77431696845699.606403-UTR-H-canaliculatus_F_contig1409:7558..7743Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1409 7559..7743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.806463-CDS-H-canaliculatus_F_contig1409:7207..75581622929159.806463-CDS-H-canaliculatus_F_contig1409:7207..7558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1409 7208..7558 +
1696845699.596955-CDS-H-canaliculatus_F_contig1409:7207..75581696845699.596955-CDS-H-canaliculatus_F_contig1409:7207..7558Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1409 7208..7558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1409.3233.1

>prot_H-canaliculatus_F_contig1409.3233.1 ID=prot_H-canaliculatus_F_contig1409.3233.1|Name=mRNA_H-canaliculatus_F_contig1409.3233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MAKCKAMNALADLPLKTSTHNPNESNDKNKRKGRRNNLLRPGAREASPSS
LTGYGMRSVAHFFMLDPHPAFPVTYGSPPVRFGISVFKITTVNTVGTPFE
VRRARRSLRLLSSSKR*
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mRNA from alignment at H-canaliculatus_F_contig1409:7158..7743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1409.3233.1 ID=mRNA_H-canaliculatus_F_contig1409.3233.1|Name=mRNA_H-canaliculatus_F_contig1409.3233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=586bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1409:7158..7743+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCGGCCGCCCTGGTGAACCTGGCCAAGGCGTAAACCTCCTTGTCCAGC
ATGGCCAAGTGCAAAGCGATGAACGCCTTGGCCGACCTGCCATTGAAAAC
GTCCACCCACAACCCAAACGAAAGTAACGACAAAAACAAAAGAAAAGGGA
GACGAAACAACTTACTTAGACCTGGCGCAAGAGAAGCTTCCCCATCGAGC
CTAACAGGCTATGGTATGAGAAGTGTTGCTCACTTTTTCATGCTTGATCC
ACATCCAGCTTTTCCCGTGACCTACGGCTCGCCGCCGGTCAGATTTGGAA
TATCAGTATTTAAAATAACAACAGTCAACACCGTAGGAACGCCTTTTGAG
GTACGTCGTGCGCGGCGTAGCTTGAGACTTTTGTCGAGTTCCAAGCGATG
AGGGTTCATTGTGGAAGGTTGGAACAAAAGCATGAAGAGAGACAAGAAAT
CAGAAGTTCTTCCATGAGCACGCGCACGATGCAAAACGGGGAGTGTGCTG
ATGTGCATGCGCCATGATAAGACGACTCAGGGCAATCCCTGACCACCACC
ACCACCACTACCACCATCACCAAAAGCAACAACAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1409:7158..7743+

>mRNA_H-canaliculatus_F_contig1409.3233.1 ID=mRNA_H-canaliculatus_F_contig1409.3233.1|Name=mRNA_H-canaliculatus_F_contig1409.3233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1409:7158..7743+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCAAGTGCAAAGCGATGAACGCCTTGGCCGACCTGCCATTGAAAAC
GTCCACCCACAACCCAAACGAAAGTAACGACAAAAACAAAAGAAAAGGGA
GACGAAACAACTTACTTAGACCTGGCGCAAGAGAAGCTTCCCCATCGAGC
CTAACAGGCTATGGTATGAGAAGTGTTGCTCACTTTTTCATGCTTGATCC
ACATCCAGCTTTTCCCGTGACCTACGGCTCGCCGCCGGTCAGATTTGGAA
TATCAGTATTTAAAATAACAACAGTCAACACCGTAGGAACGCCTTTTGAG
GTACGTCGTGCGCGGCGTAGCTTGAGACTTTTGTCGAGTTCCAAGCGATG
AATGGCCAAGTGCAAAGCGATGAACGCCTTGGCCGACCTGCCATTGAAAA
CGTCCACCCACAACCCAAACGAAAGTAACGACAAAAACAAAAGAAAAGGG
AGACGAAACAACTTACTTAGACCTGGCGCAAGAGAAGCTTCCCCATCGAG
CCTAACAGGCTATGGTATGAGAAGTGTTGCTCACTTTTTCATGCTTGATC
CACATCCAGCTTTTCCCGTGACCTACGGCTCGCCGCCGGTCAGATTTGGA
ATATCAGTATTTAAAATAACAACAGTCAACACCGTAGGAACGCCTTTTGA
GGTACGTCGTGCGCGGCGTAGCTTGAGACTTTTGTCGAGTTCCAAGCGAT
GA
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