mRNA_H-canaliculatus_F_contig14088.3231.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14088.3231.1
Unique NamemRNA_H-canaliculatus_F_contig14088.3231.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14088.3231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14088contigH-canaliculatus_F_contig14088:677..1120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size372
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14088.3231.1prot_H-canaliculatus_F_contig14088.3231.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14088 677..944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.6391513-CDS-H-canaliculatus_F_contig14088:676..7551622929159.6391513-CDS-H-canaliculatus_F_contig14088:676..755Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14088 677..755 -
1696845699.5135283-CDS-H-canaliculatus_F_contig14088:676..7551696845699.5135283-CDS-H-canaliculatus_F_contig14088:676..755Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14088 677..755 -
1622929159.6514828-CDS-H-canaliculatus_F_contig14088:828..9441622929159.6514828-CDS-H-canaliculatus_F_contig14088:828..944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14088 829..944 -
1696845699.5236876-CDS-H-canaliculatus_F_contig14088:828..9441696845699.5236876-CDS-H-canaliculatus_F_contig14088:828..944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14088 829..944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.6699662-UTR-H-canaliculatus_F_contig14088:944..11201622929159.6699662-UTR-H-canaliculatus_F_contig14088:944..1120Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14088 945..1120 -
1696845699.5339632-UTR-H-canaliculatus_F_contig14088:944..11201696845699.5339632-UTR-H-canaliculatus_F_contig14088:944..1120Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14088 945..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14088.3231.1

>prot_H-canaliculatus_F_contig14088.3231.1 ID=prot_H-canaliculatus_F_contig14088.3231.1|Name=mRNA_H-canaliculatus_F_contig14088.3231.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
MVGKTFYGVRRDILCVSGVRWRAIHVYLVWCMLILAVMRCPAREFRFVPS
SFPTESDEAFKLGGP
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mRNA from alignment at H-canaliculatus_F_contig14088:677..1120-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14088.3231.1 ID=mRNA_H-canaliculatus_F_contig14088.3231.1|Name=mRNA_H-canaliculatus_F_contig14088.3231.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14088:677..1120- (Hapterophycus canaliculatus Oshoro5f female)
ACTCCACGGAGCAAGCTGCGAGCGTGCGCTCGGCGGGATCTGCCGCGGTG
AGTGTCTTTCTAGGAGAGTGAGTCAACAGCACCAGAAAGAGAATACTGTA
CCCTCCGCGGGGACAAAACGACAGCGACCCCGTAGGATTTTTGTGGAACT
CCTTGCACCGCGAGCGAGGGTTCGGCATGGTGGGAAAAACATTTTACGGT
GTCAGACGAGACATTTTGTGCGTGTCAGGAGTTAGATGGCGGGCGATACA
TGTATACCTGGTATGGTGCATGTTGATACTTGCTGTGATGAGGTGCCCAG
CGAGAGAGTTTCGTTTTCTTCCTTCTTCCTTTTCTACGGTGCATGTTGAT
ACTAGCCGTGATGAGGTGCCCAGCGAGAGAGTTTCGTTTTGTCCCTTCTT
CCTTTCCTACGGAAAGCGACGAAGCTTTCAAGTTGGGAGGCCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14088:677..1120-

>mRNA_H-canaliculatus_F_contig14088.3231.1 ID=mRNA_H-canaliculatus_F_contig14088.3231.1|Name=mRNA_H-canaliculatus_F_contig14088.3231.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14088:677..1120- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGGGAAAAACATTTTACGGTGTCAGACGAGACATTTTGTGCGTGTC
AGGAGTTAGATGGCGGGCGATACATGTATACCTGGTATGGTGCATGTTGA
TACTTGCTGTGATGAGATGGTGGGAAAAACATTTTACGGTGTCAGACGAG
ACATTTTGTGCGTGTCAGGAGTTAGATGGCGGGCGATACATGTATACCTG
GTATGGTGCATGTTGATACTTGCTGTGATGAGGTGCCCAGCGAGAGAGTT
TCGTTTTGTCCCTTCTTCCTTTCCTACGGAAAGCGACGAAGCTTTCAAGT
TGGGAGGCCCTGTGCCCAGCGAGAGAGTTTCGTTTTGTCCCTTCTTCCTT
TCCTACGGAAAGCGACGAAGCTTTCAAGTTGGGAGGCCCT
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