mRNA_H-canaliculatus_F_contig1408.3223.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1408.3223.1
Unique NamemRNA_H-canaliculatus_F_contig1408.3223.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 1.750e-91
Identity = 220/393 (55.98%), Postives = 247/393 (62.85%), Query Frame = 1 
Query:    1 QRYLAQAHTQDFLAGVMAVAARGGEGGXXXXXXXXXAWPMASASAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLP------CSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYATIAVDDGGSATSGLGTHDHALRLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLERDCAAARVDESTAAXXXXXXXXXXXXXXXADSTV-----------DDPADRKKSSGGSMMDVEGASGDGCC--EGEEK---------------DTSAAVAAAELECLKGHLRGLRSGCV 1077
            +RYLAQAHTQ++LA + A+  +               W  ASASAACVVRGVSAVLSGRCTNALCLL E  GRHAPSGGYSVG        G+P      C SVNSVAVGALYAH QW+VGRVAVVD    LATGTADILCRTLDPAFLYAT+AV D  +AT+G+G H+HALRLL  G S                              VAVL AALEAFRPDLVMISAGLDGRKG PCGRGDLVA D+EWLTLE+VKMAERLCGGRVVSV+ER C AA+ D +       XXXXXXXXX   DS             DD +D  ++SG S    +GA G+G     GE+K               D      ++ELECLKGH+RGLRSGCV
Sbjct: 1252 KRYLAQAHTQEYLAHMSAMGRQ--------------EWGAASASAACVVRGVSAVLSGRCTNALCLL-ENPGRHAPSGGYSVG-----HRCGVPKPKEGACCSVNSVAVGALYAHRQWSVGRVAVVDFGTQLATGTADILCRTLDPAFLYATVAVCDAATATTGVGAHEHALRLLGAGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAVLYAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEVVKMAERLCGGRVVSVVERHCVAAQADTNADPGGAPXXXXXXXXXVGGDSEKEGGPRNAAAGRDDGSDAMETSGDSGSCEDGA-GEGATPPSGEKKRHEKGARQMGERAPHDDDDGGPSSELECLKGHIRGLRSGCV 1623
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BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 4.170e-58
Identity = 143/257 (55.64%), Postives = 155/257 (60.31%), Query Frame = 1 
Query:    1 QRYLAQAHTQDFLAGVMAVAARGGEGGXXXXXXXXXAWPMASASAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLP------CSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYATIAVDDGGSATSGLGTHDHALRLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEI 753
            +RYLAQAHTQ+FLA + A+  +               W  ASASAACVVRGVSAVLSGRCTNALCLL E  GRHAPSGGYSVG G      G+P      C +VNSVAVGALYAHMQW+VGRVAVVD   HLATGTADILCRTLDPAFLYAT+AV                                                           +AALEAFRPDLVMISAGLDGRKG PCGRGDLVA D+EWLTLE+
Sbjct: 1311 KRYLAQAHTQEFLAHMSAMGRQ--------------EWGAASASAACVVRGVSAVLSGRCTNALCLL-ENPGRHAPSGGYSVGHG-----CGVPKLKEGACCAVNSVAVGALYAHMQWSVGRVAVVDFGTHLATGTADILCRTLDPAFLYATVAV-----------------------------------------------------------SAALEAFRPDLVMISAGLDGRKGDPCGRGDLVAEDFEWLTLEV 1488
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.100e-23
Identity = 88/242 (36.36%), Postives = 117/242 (48.35%), Query Frame = 1 
Query:  112 WPMASASAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYATIAVDDGGSATSGLGTHDHALRLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGG--GGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLER----DCAA 819
            W  A  +A  V+  V  VL G   NA C +    G HA    + +G    G         +N+VA+ ALYAH    V RVAVVD D H   GT D+LCRT  P FLYA+I   + G         + +   +  G    G+A   +    L      GD++   G     A + AAL+ F+P+L+++SAG D  +  P   G L A D+E  T  +V  AERLC GR+VSVLE     DC A
Sbjct:  212 WEAAMTAAGAVLEAVDRVLHGEAHNAFCAV-RPPGHHAGVELHCMGAVSNG------FCILNNVALAALYAHHYGNVARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEG------ENTSQAKIFPGTGAEGEAHGNVLNIPL------GDQVHPAGFHSATARVVAALDKFKPNLILVSAGFDAHQADPSHLGTLCARDFEVFTRRMVTAAERLCAGRMVSVLEGGYALDCQA 434
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: A0A8J2SBW9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBW9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.570e-20
Identity = 90/236 (38.14%), Postives = 117/236 (49.58%), Query Frame = 1 
Query:  112 WPMASASAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYATIAVDDGGSATSGLGTH---DHALRLLAEGKSGGGDASKQLTRATL--EGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLE 804
            W  A A++A V++ V AVLSG   NALC +    G HA +   S+G      A G     +N  A+GA +A  +  + RVAV D D H   GT DIL RT DP F+Y ++    G     G G     DH   L A  +     A K +T   +  E +P               +  AL+AFRPDL+++S+G D  K  P   G L AADY  LT  +V  AER C GR+VSVLE
Sbjct: 1366 WGAAIAASAAVIQAVDAVLSGEARNALCAV-RPPGHHAGASINSLG------APGNGYCLLNHAALGAKHAAHERGLKRVAVFDFDVHHGNGTEDILARTFDPRFMYLSLHAT-GEDVFPGSGRRARPDHPGVLNAPHR-----AEKVVTTEWVLEEALP--------------RILNALDAFRPDLLILSSGFDAHKRDPVDLGRLDAADYGVLTRRLVDWAERKCCGRLVSVLE 1574
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: A0A3S0V319_9PROT (Histone deacetylase family protein n=2 Tax=Azospirillum doebereinerae TaxID=92933 RepID=A0A3S0V319_9PROT)

HSP 1 Score: 100 bits (250), Expect = 2.100e-19
Identity = 83/242 (34.30%), Postives = 112/242 (46.28%), Query Frame = 1 
Query:  130 SAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYATI---AVDDGGSATSGLGTHDHALRLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLERDCAAARVDESTAA 846
            +A  V   V AV++G   NA C +    G HA             RA G      N++AVGAL+A  +  + R+AVVD D H   GT  +   T DP   +A+     +  G  A    G  D+ L L  E  SG  +  + + RA L                      ALEAF P+L++ISAG D     P  +  L  AD+EW+T ++V+ A+R CGGRVVSVLE    A  + E  AA
Sbjct:   96 AAGSVCAAVDAVMTGEAANAFCAV-RPCGHHAEPA----------RAMGF--CVFNNIAVGALHARDRHGLSRIAVVDFDVHHGNGTQSMF--TDDPELFFASTHQSPLYPGTGAPWERGVADNILNLPLEPYSGSVEFRQAMERAILP---------------------ALEAFAPELLLISAGFDAHARDPLAQLGLTGADFEWVTRKLVETADRHCGGRVVSVLEGGYDAVGLAEGCAA 301
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: A0A1X7PD02_AZOLI (Acetoin utilization deacetylase AcuC n=2 Tax=Azospirillum TaxID=191 RepID=A0A1X7PD02_AZOLI)

HSP 1 Score: 100 bits (249), Expect = 2.840e-19
Identity = 83/242 (34.30%), Postives = 112/242 (46.28%), Query Frame = 1 
Query:  130 SAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYATI---AVDDGGSATSGLGTHDHALRLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLERDCAAARVDESTAA 846
            +A  V   V AV++G  TNA C +    G HA             RA G      N+VAVGAL+A  +  + RVAVVD D H   GT  +  +  D    +A+     +  G  A+   G  D+ L L  E  SG  +  +   R                     V+  ALEAF P+L++ISAG D     P  +  L  AD+EW+T ++V++AER CG RVVSVLE     A + E  AA
Sbjct:   96 AAGSVCAAVDAVMAGEATNAFCAV-RPCGHHAEPA----------RAMGF--CVFNNVAVGALHARERHGLSRVAVVDFDVHHGNGTQAMFAQ--DAGLFFASTHQSPLYPGTGASWERGVADNILNLPLEPYSGSAEFRQAFER---------------------VILPALEAFAPELLLISAGFDAHARDPLAQLGLTGADFEWVTRKLVEVAERQCGNRVVSVLEGGYDEAGLAEGCAA 301
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: A0A1H1K2F8_9HYPH (Acetoin utilization deacetylase AcuC n=3 Tax=unclassified Hyphomicrobiales TaxID=41292 RepID=A0A1H1K2F8_9HYPH)

HSP 1 Score: 97.8 bits (242), Expect = 2.320e-18
Identity = 80/249 (32.13%), Postives = 112/249 (44.98%), Query Frame = 1 
Query:  112 WPMASASAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYAT---IAVDDGGSATSGLGTHDHALRL-LAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLERDCAAARVDESTAA 846
            WP    +    V+ V AV+ G  +NA C      G HA             RA G      N+ A+ A +A   +   RVA+VD D H   GT DI+    D + LYA+     +  G  A S  G HD+ + L LA G         Q  R   EGV                +   ++AF+PDL++ISAG D  +  P    DL   ++ W T +++ +A+R CGGR+VSVLE     A +  ST+A
Sbjct:   90 WPAILHAMGAAVQAVDAVMGGTASNAFCAT-RPPGHHAERN----------RAMGF--CLFNNAAIAARHAQRAYGAERVAIVDWDVHHGNGTQDIVWS--DKSLLYASSHQFPLYPGTGAASETGEHDNVVNLPLASG------TGPQAFRNGFEGV----------------ILPRIDAFKPDLIVISAGFDAHRRDPLASLDLGEEEFGWATRQVMAIADRRCGGRIVSVLEGGYDLAGLAASTSA 301
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: UPI0011827E14 (histone deacetylase family protein n=1 Tax=Elioraea rosea TaxID=2492390 RepID=UPI0011827E14)

HSP 1 Score: 97.4 bits (241), Expect = 3.190e-18
Identity = 91/272 (33.46%), Postives = 125/272 (45.96%), Query Frame = 1 
Query:   10 LAQAHTQDFLAGVMAVAARGGE----GGXXXXXXXXXAWPMASASAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYAT---IAVDDGGSATSGLGTHDHALRLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLE 804
            LA+AH + ++ G++++     E     G         A  + SA AA  V  V AV+ G   NA C      G HA +G          R  G  C   N+ AV A +A  +W   RVAVVD D H   GT  IL    DP F YA+   + +  G    S  G  ++ L +     SGG +      RA        GDEI            A+EAF PDL+++SAG D  +  P     +  AD+ WL+ E+V +AER CGG++VS+LE
Sbjct:   55 LARAHPRAYVEGILSIVPEPDERVMLDGDTVMSHGSRAAALRSAGAA--VAAVDAVMEGWAHNAFCAT-RPPGHHAEAG----------RPMGF-CLFSNA-AVAAHHARAKWGAARVAVVDFDVHHGNGTQAIL--ESDPGFFYASSHEMPLYPGTGDPSERGVANNVLNVALRSMSGGPEF-----RAAW------GDEI----------IPAVEAFGPDLLIVSAGFDAHRRDPLASLTVTTADFSWLSHELVALAERACGGKLVSLLE 288
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: UPI001055E1DB (histone deacetylase family protein n=1 Tax=Marinomonas sp. KMM3893 TaxID=2530201 RepID=UPI001055E1DB)

HSP 1 Score: 97.1 bits (240), Expect = 4.090e-18
Identity = 76/225 (33.78%), Postives = 105/225 (46.67%), Query Frame = 1 
Query:  130 SAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYATIAVDDGGSATSGLGTHDHALRLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLE 804
            +A  VV+ V  V+SG+  NA C +    G HA             RA G      N++AVGA +A     V RVA++D D H   GT  I     DP  LYA+              +HD+ + +  E  SGG +    +T                      VL   L +FRP+L+MISAG D  K  P G+  L  +D++W+T ++V MAE+ C GR+VSVLE
Sbjct:   97 AAGAVVQAVDLVMSGKMDNAFCAV-RPPGHHAEID----------RAMGF--CFFNNIAVGAKHALTHGGVKRVAIIDFDVHHGNGTEAIFKG--DPNVLYASSYQHPFFPYADPGASHDNIMHMPLEAGSGGQEFRTAMTD---------------------VLFPRLASFRPELIMISAGFDAHKSDPMGQLRLEDSDFQWITEQLVTMAEQYCQGRIVSVLE 285
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Match: UPI001CFFF45E (histone deacetylase family protein n=1 Tax=Marinomonas sp. E8 TaxID=2883105 RepID=UPI001CFFF45E)

HSP 1 Score: 95.1 bits (235), Expect = 1.830e-17
Identity = 75/225 (33.33%), Postives = 108/225 (48.00%), Query Frame = 1 
Query:  130 SAACVVRGVSAVLSGRCTNALCLLPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGRVAVVDLDAHLATGTADILCRTLDPAFLYATIAVDDGGSATSGLGTHDHALRLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFRPDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSVLE 804
            +A  VVR V  V+SG   NA C +    G HA             +A G      N++AVG  +A  Q+ + RVA+VD DAH   GT DI    +D   +YA+         +    +HD+ L +  E  SG  DA + +    L                      ALEAF+P+L+MISAG D  K  P  +  L  +D+ W+T +++ +A+R CGG++VSVLE
Sbjct:   97 AAGAVVRAVDVVMSGEMDNAFCGV-RPPGHHAEQD----------KAMGF--CLFNNIAVGTRHALHQYGLQRVAIVDFDAHHGNGTEDIF--KMDEKVMYASSYQHPFYPYSDPGASHDNILHMPLEAGSGS-DAFQAIMTEQL--------------------FPALEAFQPELIMISAGFDAHKEDPMAQLRLSESDFTWITDQLMAIADRHCGGKIVSVLE 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1408.3223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK20_9PHAE1.750e-9155.98Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D8LN85_ECTSI4.170e-5855.64Histone deacetylase superfamily n=1 Tax=Ectocarpus... [more]
A0A6H5L3L8_9PHAE1.100e-2336.36Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A8J2SBW9_9STRA2.570e-2038.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3S0V319_9PROT2.100e-1934.30Histone deacetylase family protein n=2 Tax=Azospir... [more]
A0A1X7PD02_AZOLI2.840e-1934.30Acetoin utilization deacetylase AcuC n=2 Tax=Azosp... [more]
A0A1H1K2F8_9HYPH2.320e-1832.13Acetoin utilization deacetylase AcuC n=3 Tax=uncla... [more]
UPI0011827E143.190e-1833.46histone deacetylase family protein n=1 Tax=Eliorae... [more]
UPI001055E1DB4.090e-1833.78histone deacetylase family protein n=1 Tax=Marinom... [more]
UPI001CFFF45E1.830e-1733.33histone deacetylase family protein n=1 Tax=Marinom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1408contigH-canaliculatus_F_contig1408:274..5271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue5.2e-17
Seed eggNOG ortholog44056.XP_009035751.1
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759,KOG4475@1,KOG4475@2759
Ec32 ortholog descriptionHistone deacetylase with CXXC-type zinc finger domain
Ec32 orthologEc-05_003910.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size3234
Cds size1044
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.3044813-UTR-H-canaliculatus_F_contig1408:273..3211622929158.3044813-UTR-H-canaliculatus_F_contig1408:273..321Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1408 274..321 +
1696845698.9395266-UTR-H-canaliculatus_F_contig1408:273..3211696845698.9395266-UTR-H-canaliculatus_F_contig1408:273..321Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1408 274..321 +
1622929158.4103036-UTR-H-canaliculatus_F_contig1408:3093..40471622929158.4103036-UTR-H-canaliculatus_F_contig1408:3093..4047Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1408 3094..4047 +
1696845698.9941182-UTR-H-canaliculatus_F_contig1408:3093..40471696845698.9941182-UTR-H-canaliculatus_F_contig1408:3093..4047Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1408 3094..4047 +
1622929158.4299405-UTR-H-canaliculatus_F_contig1408:4083..52711622929158.4299405-UTR-H-canaliculatus_F_contig1408:4083..5271Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1408 4084..5271 +
1696845699.0048738-UTR-H-canaliculatus_F_contig1408:4083..52711696845699.0048738-UTR-H-canaliculatus_F_contig1408:4083..5271Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1408 4084..5271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.322791-CDS-H-canaliculatus_F_contig1408:321..6081622929158.322791-CDS-H-canaliculatus_F_contig1408:321..608Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1408 322..608 +
1696845698.9509478-CDS-H-canaliculatus_F_contig1408:321..6081696845698.9509478-CDS-H-canaliculatus_F_contig1408:321..608Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1408 322..608 +
1622929158.3374116-CDS-H-canaliculatus_F_contig1408:1068..11841622929158.3374116-CDS-H-canaliculatus_F_contig1408:1068..1184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1408 1069..1184 +
1696845698.9618044-CDS-H-canaliculatus_F_contig1408:1068..11841696845698.9618044-CDS-H-canaliculatus_F_contig1408:1068..1184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1408 1069..1184 +
1622929158.359872-CDS-H-canaliculatus_F_contig1408:1841..21401622929158.359872-CDS-H-canaliculatus_F_contig1408:1841..2140Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1408 1842..2140 +
1696845698.9727833-CDS-H-canaliculatus_F_contig1408:1841..21401696845698.9727833-CDS-H-canaliculatus_F_contig1408:1841..2140Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1408 1842..2140 +
1622929158.3852139-CDS-H-canaliculatus_F_contig1408:2751..30931622929158.3852139-CDS-H-canaliculatus_F_contig1408:2751..3093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1408 2752..3093 +
1696845698.9838612-CDS-H-canaliculatus_F_contig1408:2751..30931696845698.9838612-CDS-H-canaliculatus_F_contig1408:2751..3093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1408 2752..3093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1408.3223.1prot_H-canaliculatus_F_contig1408.3223.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1408 322..3093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1408.3223.1

>prot_H-canaliculatus_F_contig1408.3223.1 ID=prot_H-canaliculatus_F_contig1408.3223.1|Name=mRNA_H-canaliculatus_F_contig1408.3223.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=348bp
MAVAARGGEGGGGAGRGGSGAWPMASASAACVVRGVSAVLSGRCTNALCL
LPETSGRHAPSGGYSVGGGKGGRASGLPCSSVNSVAVGALYAHMQWAVGR
VAVVDLDAHLATGTADILCRTLDPAFLYATIAVDDGGSATSGLGTHDHAL
RLLAEGKSGGGDASKQLTRATLEGVPGHGDEIGGGGGGVAVLAAALEAFR
PDLVMISAGLDGRKGHPCGRGDLVAADYEWLTLEIVKMAERLCGGRVVSV
LERDCAAARVDESTAAAAAAAAETEMETETEADSTVDDPADRKKSSGGSM
MDVEGASGDGCCEGEEKDTSAAVAAAELECLKGHLRGLRSGCVEHTN*
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mRNA from alignment at H-canaliculatus_F_contig1408:274..5271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1408.3223.1 ID=mRNA_H-canaliculatus_F_contig1408.3223.1|Name=mRNA_H-canaliculatus_F_contig1408.3223.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4998bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1408:274..5271+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCGGTACCTCGCCCAAGCGCACACCCAGGATTTCCTTGCAGGCGTGAT
GGCCGTAGCCGCCCGGGGGGGCGAGGGCGGTGGTGGTGCGGGGCGAGGAG
GAAGTGGGGCGTGGCCTATGGCTTCGGCCTCCGCCGCGTGCGTCGTGAGG
GGCGTGTCGGCGGTGCTGTCCGGCAGATGCACGAACGCTCTCTGCCTGCT
CCCGGAAACCTCCGGGAGGCATGCCCCGAGCGGGGGCTACTCCGTGGGCG
GGGGGAAGGGGGGGAGGGCATCCGGGCTGCCGTGCTCCTCCGTTAACAGC
GTTGCCGTGGGGGCGCTGTACGCGCACATGCAGTGGTGGGTGGTGGCGCC
TTCCGACGTCGTTCGTTGCTTGATGTGTTTGCTATGCCTCCGATGTTGTT
GTTGTTGTTGTCATACGGTGAGAGGTGAAACCTTGCCTCCCTCCTCGCCG
AACCACACTGAGGCCTTCGTAGTCCCCATGCTCGAAGGGTGAATCTAACC
CCGCCTTCTGCATGCCGCTGCTGCACGTGTCTTATTTCTTCGCCTGTGCG
AAGTAAAAAACCTCGATGACTCAAATCGGGGATGTCCCGTCCGTTGCTCA
CCCTCCCATCCACGTGTTGCTCTGGTCGCTCTGGTCGCCGCTTTGCCAGC
CTTTTAGCCCGTTTATTTCTGTTGGTCTTCTTACTTGAACGCGTTTGCTC
TCCTGTTTGATGTTGTTGTGTCTTCGCGTGGTGGTGGTGGTCGTCGTCGT
CGTCGTCGTTATTGTTGGCGGTGTTATCCCTGTCTTCGTGGCCAGGGCCG
TGGGGAGAGTTGCCGTGGTGGACTTGGACGCCCACTTGGCGACCGGGACC
GCGGACATCCTCTGCCGCACGCTGGACCCGGCCTTCCTCTACGCCACCAT
CGCCGTCGACGGTGAGAAACGCGTATGATTTCTTCGCTCTCTTTTCAGAC
GGTGATTCTTGTGCGGTCGTGCGGGCCCCGTAGGCCTGCATGCACACCAA
GAGTCGCGGCGGATCAAAGGCCCATGTTGCCACGGTAGAATGGAGCAACT
GTTCGACATCTTGTCTCTCTTGACGGCTTCATGTGCCCGCCATTTTTTTA
TCTAACGGCATTGGCACGTCGTTACACGAATACATCACGCATTGCGATTG
TTGATGGCAACTCCCGTGGCGATTTTTGGGCAGAGTTGTGACGGTTGTTT
CTTTTTTCCTTTCCTCTGATCTTGCGGCGTCCTTTTGAGTCAGTTTGCTT
GACGTGGTGCGGTCGCTGTTTGCCGCCTGACTCCTGCGTCTCTTCCTCCC
ATTTCTGTCTCTGTCTCCGTCCGTCTGTCAGTCTGTGTGTCTCCCTCTCT
CTTCCTCTGTCTCTCTGCATGCTTCACGACGGTTCGGTCTCGATCAATGC
TGGTGTGGTTCTTGTCCTTGCCGTCGGACCCGTTCTCATTTTTTTCGTGG
TGGATCTTTGTTGGCGCTATCCTGGCCCTTTTTCTCCTTCTTCTTCTTCT
AGTCGTTACCGACCCCGACCGGCTTCGCCGCCTCCTCCTTTTGTCGTTTG
TTCTCTCAACCGCTCCAGACGGCGGGAGCGCCACTTCTGGCCTGGGCACA
CACGACCACGCGCTCCGCCTTCTCGCAGAAGGCAAGAGCGGCGGCGGCGA
CGCCAGTAAGCAGTTGACCCGCGCCACCCTGGAAGGCGTTCCGGGGCACG
GGGACGAAATCGGCGGCGGCGGCGGCGGCGTTGCCGTTCTGGCCGCTGCG
CTGGAAGCTTTCCGGCCCGACCTGGTGATGATCTCCGCCGGCCTGGACGG
CAGGAAGGGTCACCCGTGCGGCAGAGGGGATCTGGTCGCCGCCGACTACG
AGTGGCTCACGCTGGAGGTGTGTTGTGTGTGTCTGTGTGTGTCTGTTTCT
GTGTCTGTGTTTCTGTGTGTCTGTGTGCGTGTGCATGTGTGTGTGCGTGC
TTTCATGGGGATGTGTGGGTGTGATCCTGCTGTATCTGCAACGACTCGTG
AGCCGAGCCTGTTTGACTTCCTTCCTTGCTTGTCCGCAAATGCGGCCGAG
GCACTGGGTCAGCTCGAAGCTTTTGTGGGTCGGAACCGTTCTCGCCATTG
GTCTTTTGGCTCTTGCCGCCGCCGTTGCCGTCGCTGTTGTTGTAGTGGTT
GTTTTTGCTGTTGTTGCCTTTGTTGTCGTTTTCGCTTTCGCTTCCTGTCT
CGTGCCTCTCCCGGTATACCTGTTTCGCAGTCGATGGGTTTCCCCGGGAA
AGAGCATTGTGACTGGAACCAAACGCGCCCTCGATGCTCGCAACGTCTCG
CGAACACGGCATGCCCAGCACGTGAGCGGCACATCCGCGCCGGCAGTGCC
ATGCTCTCGCCCTCACTCGAGACGCTGCCGCGCTGTCCGTGTGCCGTCGT
GATGTCCGCGCTAAACCGCCGCCGCTGCTGCTACTTGTGCATGGACCCCC
TCGTTCCCGCCTCGCCCCTCGACCGCAGATCGTCAAGATGGCCGAGCGCT
TGTGCGGCGGGCGGGTCGTCTCCGTGCTGGAGCGCGACTGCGCCGCGGCG
CGGGTGGACGAAAGCACCGCGGCGGCGGCGGCGGCGGCGGCGGAGACCGA
GATGGAGACCGAGACCGAGGCAGATTCGACGGTAGATGATCCTGCCGATC
GCAAAAAGAGCAGTGGCGGCAGCATGATGGACGTCGAGGGCGCCAGTGGG
GACGGTTGCTGCGAGGGGGAGGAGAAAGACACGTCGGCAGCGGTGGCGGC
GGCGGAGCTCGAGTGCCTCAAGGGGCACCTCCGCGGTCTGCGCAGTGGCT
GCGTGGAACACACGAATTAAGAGCGGGAGGAGGAGGGAGGGAGGGACGGG
GTTCGAGGTAACGAGAAGTTGGAAACCGAGAATTGGGAGACGTGCGGTTT
GCGGCGGGAGCACGGGGCGGGAAATGGTGGTGATGGCATTGTGGTGTCTT
TCGGCTGGTGAGGTTTGGTCGATGACCCCTACGCTGCAATGGAAATCAAG
TGTTTTGAGATCCTAGTCTGAAGGAATCCTGGCTTGTGGGCAATCATCTT
TTCGTGTGTCGGTTTGCCTGGGAGTTCAAGTATGTTTGGTGGATGCCGCA
CGCCTGCGTGCTCGGTTCCTTGATGAAAGCCAGCCTGCCTTACATTCCAC
GTAGAAGAGAAGGATGTGGCGCACCAGATAGACATTTCACGGCCTGCCAC
GTCATGTCTGGCACCTTGCCGGCGTCGGCTTCACCACGACAACCCCCACC
ACCATCATCATCAGCAGGGCTCGCGAGGCGCTCGTTGTCTTGCTTTCCGT
CTCTGAAGCCGACCTGATTTGTGTTCTCTTGGCTCCCGTGTCACGTAGGG
GTGCGGCGAGGGCGCCGTGGGTTAAAATGGAGGGGGTATGTCGCGCGTGT
CGCGCGTGCCTGTCTTCTCTGTGAAGAATAGCTGTCCGTCTCCACGAAGC
AACGAAAAGTCGGGTCGCCGCTAAAACGACCACGCTGCGCGGGGACATCA
TAGATATTTGTTGAGATGCTCGTGCGTTGCGCGCAGCGGTGGGGGGTGTG
GTGCTGCACAGGACGGGGGGTGGACCGTCGCGTCCTCTTGATCGACCGGG
TGATGATGACAAAATGATTTGTGCGTTTCTGATTTTTCTCGCTTTCGTAT
ATAGCGTGCGAAGTTTTCGTCCGACTACGTCTTTCTTCCGCGTCCTTTTT
CGTGTTTGCCTTCCGCGTGCCCCCGTTGCCTGTGTCTGTGTGTGTGTGTG
TATGTTTTGAGTGTCCGTGTGTGTGTGTGTGCTGGCGGCGGGTTGTTTGG
CCATCGTCAGCTGGTCGCGCAGAGAAAGCTGTTGGGCTGCCGAGTGATCG
GTATCGAATGAATGGCCCGTGAGGATTGATTTCTCGGCGACGCGTGAATG
ATGTGTGGTAAAAACGGATAAAGGGCGAGGAGGTTGAGGGAGGGAAGGGG
TGAGCGTGGACAATGAGAGGAACCGGCTTCCAACGTTCCGAGCTCGATAG
CCACACATCCACGGCGTGTGGGCCTTGTCTCAGCGTTTGTTCGTGTGAGT
AGAGGGAGGGAGAGACTGAGGGCAAAAAATCCGGTCTTTGATTTGGTATT
TACTACTTCGAGGTTTTAGTTGTCAGGTGTGCTGTCTGCCTGCGTGCAAG
ATTCCATTCGCATGATGCTGTAGCCGTCAGTGTCGTTTGGTACAGAGAGG
TTGGGTCCTCTCAGGATTTTTTTGCGAACTACCGAGGACTCGACCCTAAA
GATGACTTCATCGAGATGTGAGAACTAACGAGGCGCCAAATATTCATATT
TGTAGACTGTACTCCGTGCGGTCATCCGAAAGAGGAGGAGGAGCCTCCAT
CACGCAAGGTAAGAACCGCTCTATGCTGCGTTCAGTTGCTGCCGGTTATT
CAGTGCCGTGCAGTCTGTGCTTGCAGACTGCACGGACGGAACGAAAGAGT
TGGGCCTCGACCTTTGTTTAAAATATGGGGCTCGCGCTTTCACGTTTGAT
ATTACGTGGCCGGGGCGGGGCAGCATCTGAACTTTGTTTCTCTTTGAAAC
CGTCGTTCGTTTGTTTCCGGTCCTTAGAAACCCGAGTAGCAGTGGCGTAA
GTGCGAGGGCTAACACCGCGTGGACACTCAGTAGTCATCTCATACAATCT
AGTACACTCGTGCAGGTCGTCAACTTTGCTGGCGTCGGTGGCGGCGATTT
TCGTACGATTCTCGCCTGCGTTCGGTTGAATTCTTGCGAAAGGAACGGCA
TCATCACCGTGGTCGTGACGCTGTCCTAGAAGTCAGGGTTGAAGTGTTTT
TGTCGCCTGCCAGGTGATCATGCATGTCGATTTACGAAAGGTGTGACTAT
TCATGCGCTGCCCGAAGCCACAAATGCCTCTAGGTCACCCAGTCAGTTGG
TCCGATGTTTACCGCAGGTCGCAACTCGATTTTTCTATCCCCGTTCTTAC
GGATGCTTTAATATGGCGAGATCTTCCTTCGATGCTATTTTCAACCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1408:274..5271+

>mRNA_H-canaliculatus_F_contig1408.3223.1 ID=mRNA_H-canaliculatus_F_contig1408.3223.1|Name=mRNA_H-canaliculatus_F_contig1408.3223.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2088bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1408:274..5271+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCGTAGCCGCCCGGGGGGGCGAGGGCGGTGGTGGTGCGGGGCGAGG
AGGAAGTGGGGCGTGGCCTATGGCTTCGGCCTCCGCCGCGTGCGTCGTGA
GGGGCGTGTCGGCGGTGCTGTCCGGCAGATGCACGAACGCTCTCTGCCTG
CTCCCGGAAACCTCCGGGAGGCATGCCCCGAGCGGGGGCTACTCCGTGGG
CGGGGGGAAGGGGGGGAGGGCATCCGGGCTGCCGTGCTCCTCCGTTAACA
GCGTTGCCGTGGGGGCGCTGTACGCGCACATGCAGTGATGGCCGTAGCCG
CCCGGGGGGGCGAGGGCGGTGGTGGTGCGGGGCGAGGAGGAAGTGGGGCG
TGGCCTATGGCTTCGGCCTCCGCCGCGTGCGTCGTGAGGGGCGTGTCGGC
GGTGCTGTCCGGCAGATGCACGAACGCTCTCTGCCTGCTCCCGGAAACCT
CCGGGAGGCATGCCCCGAGCGGGGGCTACTCCGTGGGCGGGGGGAAGGGG
GGGAGGGCATCCGGGCTGCCGTGCTCCTCCGTTAACAGCGTTGCCGTGGG
GGCGCTGTACGCGCACATGCAGTGGGCCGTGGGGAGAGTTGCCGTGGTGG
ACTTGGACGCCCACTTGGCGACCGGGACCGCGGACATCCTCTGCCGCACG
CTGGACCCGGCCTTCCTCTACGCCACCATCGCCGTCGACGGGCCGTGGGG
AGAGTTGCCGTGGTGGACTTGGACGCCCACTTGGCGACCGGGACCGCGGA
CATCCTCTGCCGCACGCTGGACCCGGCCTTCCTCTACGCCACCATCGCCG
TCGACGACGGCGGGAGCGCCACTTCTGGCCTGGGCACACACGACCACGCG
CTCCGCCTTCTCGCAGAAGGCAAGAGCGGCGGCGGCGACGCCAGTAAGCA
GTTGACCCGCGCCACCCTGGAAGGCGTTCCGGGGCACGGGGACGAAATCG
GCGGCGGCGGCGGCGGCGTTGCCGTTCTGGCCGCTGCGCTGGAAGCTTTC
CGGCCCGACCTGGTGATGATCTCCGCCGGCCTGGACGGCAGGAAGGGTCA
CCCGTGCGGCAGAGGGGATCTGGTCGCCGCCGACTACGAGTGGCTCACGC
TGGAGACGGCGGGAGCGCCACTTCTGGCCTGGGCACACACGACCACGCGC
TCCGCCTTCTCGCAGAAGGCAAGAGCGGCGGCGGCGACGCCAGTAAGCAG
TTGACCCGCGCCACCCTGGAAGGCGTTCCGGGGCACGGGGACGAAATCGG
CGGCGGCGGCGGCGGCGTTGCCGTTCTGGCCGCTGCGCTGGAAGCTTTCC
GGCCCGACCTGGTGATGATCTCCGCCGGCCTGGACGGCAGGAAGGGTCAC
CCGTGCGGCAGAGGGGATCTGGTCGCCGCCGACTACGAGTGGCTCACGCT
GGAGATCGTCAAGATGGCCGAGCGCTTGTGCGGCGGGCGGGTCGTCTCCG
TGCTGGAGCGCGACTGCGCCGCGGCGCGGGTGGACGAAAGCACCGCGGCG
GCGGCGGCGGCGGCGGCGGAGACCGAGATGGAGACCGAGACCGAGGCAGA
TTCGACGGTAGATGATCCTGCCGATCGCAAAAAGAGCAGTGGCGGCAGCA
TGATGGACGTCGAGGGCGCCAGTGGGGACGGTTGCTGCGAGGGGGAGGAG
AAAGACACGTCGGCAGCGGTGGCGGCGGCGGAGCTCGAGTGCCTCAAGGG
GCACCTCCGCGGTCTGCGCAGTGGCTGCGTGGAACACACGAATTAAATCG
TCAAGATGGCCGAGCGCTTGTGCGGCGGGCGGGTCGTCTCCGTGCTGGAG
CGCGACTGCGCCGCGGCGCGGGTGGACGAAAGCACCGCGGCGGCGGCGGC
GGCGGCGGCGGAGACCGAGATGGAGACCGAGACCGAGGCAGATTCGACGG
TAGATGATCCTGCCGATCGCAAAAAGAGCAGTGGCGGCAGCATGATGGAC
GTCGAGGGCGCCAGTGGGGACGGTTGCTGCGAGGGGGAGGAGAAAGACAC
GTCGGCAGCGGTGGCGGCGGCGGAGCTCGAGTGCCTCAAGGGGCACCTCC
GCGGTCTGCGCAGTGGCTGCGTGGAACACACGAATTAA
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