mRNA_H-canaliculatus_F_contig10304.321.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10304.321.1
Unique NamemRNA_H-canaliculatus_F_contig10304.321.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10304.321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10304contigH-canaliculatus_F_contig10304:700..1108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size411
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928667.2663937-CDS-H-canaliculatus_F_contig10304:699..10771622928667.2663937-CDS-H-canaliculatus_F_contig10304:699..1077Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10304 700..1077 +
1696845519.6352842-CDS-H-canaliculatus_F_contig10304:699..10771696845519.6352842-CDS-H-canaliculatus_F_contig10304:699..1077Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10304 700..1077 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928667.2782984-UTR-H-canaliculatus_F_contig10304:1077..11081622928667.2782984-UTR-H-canaliculatus_F_contig10304:1077..1108Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10304 1078..1108 +
1696845519.6450262-UTR-H-canaliculatus_F_contig10304:1077..11081696845519.6450262-UTR-H-canaliculatus_F_contig10304:1077..1108Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10304 1078..1108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10304.321.1prot_H-canaliculatus_F_contig10304.321.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10304 700..1077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10304.321.1

>prot_H-canaliculatus_F_contig10304.321.1 ID=prot_H-canaliculatus_F_contig10304.321.1|Name=mRNA_H-canaliculatus_F_contig10304.321.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
TLAPLGVVAPLGVLAKRWRDKAGTKWFHSIITQALGFVAQGCGNPQRRGL
HTFGIVSSATTTSLVSVSCASTRQSSSSRGYTACCVDAARAQRSTRSLPC
NGLVCGLHRECGKTRPPSQKHQLPT*
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mRNA from alignment at H-canaliculatus_F_contig10304:700..1108+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10304.321.1 ID=mRNA_H-canaliculatus_F_contig10304.321.1|Name=mRNA_H-canaliculatus_F_contig10304.321.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=409bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10304:700..1108+ (Hapterophycus canaliculatus Oshoro5f female)
ACCTTGGCACCCCTGGGGGTCGTGGCACCCCTCGGGGTCTTGGCAAAGAG
GTGGAGAGACAAAGCGGGAACCAAATGGTTTCATTCGATTATCACACAGG
CATTGGGGTTCGTGGCACAGGGGTGCGGTAACCCCCAAAGACGTGGGCTA
CACACGTTCGGAATAGTGTCGAGCGCAACCACGACCAGCTTAGTGAGCGT
GTCTTGCGCTAGCACAAGGCAAAGCTCGTCTTCGCGGGGCTATACTGCTT
GCTGTGTCGATGCCGCACGTGCGCAAAGGAGTACAAGATCTCTCCCCTGC
AACGGTTTGGTATGTGGACTCCACCGAGAGTGCGGAAAGACCAGGCCTCC
CAGCCAGAAACACCAACTACCTACCTAGGCTGGCGGAAGTAGCGATAGAG
ACGGAAGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10304:700..1108+

>mRNA_H-canaliculatus_F_contig10304.321.1 ID=mRNA_H-canaliculatus_F_contig10304.321.1|Name=mRNA_H-canaliculatus_F_contig10304.321.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10304:700..1108+ (Hapterophycus canaliculatus Oshoro5f female)
ACCTTGGCACCCCTGGGGGTCGTGGCACCCCTCGGGGTCTTGGCAAAGAG
GTGGAGAGACAAAGCGGGAACCAAATGGTTTCATTCGATTATCACACAGG
CATTGGGGTTCGTGGCACAGGGGTGCGGTAACCCCCAAAGACGTGGGCTA
CACACGTTCGGAATAGTGTCGAGCGCAACCACGACCAGCTTAGTGAGCGT
GTCTTGCGCTAGCACAAGGCAAAGCTCGTCTTCGCGGGGCTATACTGCTT
GCTGTGTCGATGCCGCACGTGCGCAAAGGAGTACAAGATCTCTCCCCTGC
AACGGTTTGGTATGTGGACTCCACCGAGAGTGCGGAAAGACCAGGCCTCC
CAGCCAGAAACACCAACTACCTACCTAGACCTTGGCACCCCTGGGGGTCG
TGGCACCCCTCGGGGTCTTGGCAAAGAGGTGGAGAGACAAAGCGGGAACC
AAATGGTTTCATTCGATTATCACACAGGCATTGGGGTTCGTGGCACAGGG
GTGCGGTAACCCCCAAAGACGTGGGCTACACACGTTCGGAATAGTGTCGA
GCGCAACCACGACCAGCTTAGTGAGCGTGTCTTGCGCTAGCACAAGGCAA
AGCTCGTCTTCGCGGGGCTATACTGCTTGCTGTGTCGATGCCGCACGTGC
GCAAAGGAGTACAAGATCTCTCCCCTGCAACGGTTTGGTATGTGGACTCC
ACCGAGAGTGCGGAAAGACCAGGCCTCCCAGCCAGAAACACCAACTACCT
ACCTAG
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