mRNA_H-canaliculatus_F_contig1407.3219.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: A0A6H5L249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE) HSP 1 Score: 427 bits (1097), Expect = 1.180e-135 Identity = 294/554 (53.07%), Postives = 337/554 (60.83%), Query Frame = 1
Query: 253 SQILIEQAATTFDVYPAVITTKYYNAEVSFWRQAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDLLTEEAEEGGASAGGAGFGQSLAETARAEGRGGXXXXXXXXXXXXX-----VRERRRRCLEWCLDHGLEYVEADCRDVQRGGELREKEGVPRVVEALQSNVWTGMEFRTDNRPSLMAAAXXXXXXXXXXXXXXXIGGVGSVSR--------SSSGGEXGTAT-LSPSVG-DGEEEVSEYLSGFVNGDDGDAEYAGYGALDSGDXXXXXXXXXXXXXXXXXXGQNGGGTGQEDXXEGRDEDEVGVDATHIELQARWEQPDLSSPS-PGAGRDASGVAAPQLAEDVAASRQDRSLETANPSSEPVGGTAPVHEGDGGKIAADEENTTGLVAKTGXXXXXXXSASVRHEGGAELPGNFSXXXXXXXXXXTEHDCCREGADVMGGRGKGAGKAESSTKSSEERMLEAVGSMFGGLGGESEGDEMELLMGEVRKARELGDSVPDDERRARAENVAMKLAALLGDL 1866
SQ+L+EQA FDV+PA ITTKYYNA++SFWRQAQA+VP+LALRSAEQL GLEGIIVL DLRQES FD+A QWAA ++DR++CAFR+CVGSKLDLL ++ +G AGFG AET G XXXXXXX +RERRRRCL WCLDHG EYVEADCRD GGELREKEGVPR+VEALQSNVWT MEF + NRPSLMAA G VG V SSGGE GTA LS + G DG EVSEYL GFV+ DD +YAGYGALDSGD G GG G EG D V VD +HIELQARWEQ D SS S P AG DA+ A L + + RS ++ P TAP H+G ++N +K G SA+ GG PG S C R GA G +G G E+++K SEE +LEA GSM GG+GG+ EGDEME LMGEVRKARELG SV D+ERR+RA NVAM+LAALLGDL
Sbjct: 60 SQVLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPILALRSAEQLEGLEGIIVLFDLRQESGFDEASQWAALMEDREECAFRVCVGSKLDLLPQDPGDG------AGFGTG-AETTLEPAESGLEGDAAXXXXXXXXXXEGLRERRRRCLGWCLDHGFEYVEADCRDSNTGGELREKEGVPRIVEALQSNVWTDMEFLSSNRPSLMAAVATAAVGGSRND-----GAVGDVXXXXXXXSVSESSGGEDGTAAALSSTAGADGGHEVSEYLHGFVDVDDEGGKYAGYGALDSGDEEEGGDGDGQVAGEWSRGGVEEGGAGA--PREGGDG--VVVDPSHIELQARWEQQDHSSSSLPDAG-DATNAATAALPSEQ---QSGRSCNDQQGAAAPERDTAPSHDG-------RKKNAEMFPSKPGD------SAANTPTGGTTAPGG-SCAGQSDGGNGEGGSCRRAGAAAAG---EGTGDGEAASKESEEYLLEAAGSMVGGIGGDLEGDEMEQLMGEVRKARELGGSVSDEERRSRAANVAMRLAALLGDL 576
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: D7FHG9_ECTSI (IRC6, uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI) HSP 1 Score: 368 bits (945), Expect = 3.160e-114 Identity = 283/527 (53.70%), Postives = 313/527 (59.39%), Query Frame = 1
Query: 334 VSFWRQAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDLLTEEAEEGGASAGGAGFGQSLAETARAEGRGGXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELREKEGVPRVVEALQSNVWTGMEFRTDNRPSLMAA----AXXXXXXXXXXXXXXXIGGVGSVSRSSSGGEXGTATLS-PSVGDGEEEVSEYLSGFVNGDDGDAEYAGYGALDSGDXXXXXXXXXXXXXXXXXXGQNG--------GGTGQEDXXEGRDEDEVGVDATHIELQARWEQPD-LSSPSPGAGRDASGVAAPQLA---EDVAASRQDRSLETANPSSEPVGGTAPVHEGDGGKIAADEENTTGLVAKTGXXXXXXXSASVRHEGGAELPGNFSXXXXXXXXXXTEHDCCREGADVMGGRGKGAGKAESSTKSSEERMLEAVGSMFGGLGGESEGDEMELLMGEVRKARELGDSVPDDERRARAENVAMKLAALLGD 1863
+SFWRQAQA+VPVLALRSAEQL GLEGIIV+ DLRQESS D+ QWAA V+DR++CAFR+CVGSKLDLL E+ +G GFG AETA G ++ERR RCL WCLDHG EYVEADCRD GGELREKEGVPR+VEALQSNVWTGMEF + NRPSLMAA A +GG GSVS SS X A LS G E SEYL GFV+ DD EYAGYGALDSGD XXXXXXXXXXX GG G EGR V VD +HIELQARWEQ D SS SPGAG DA+ AA A E+ AA RS ++ P TAP H DGGK N L +K G S + G PG XXXX CR G G G+A S K SEE +LEA GSM GG+GG+ EGDEME LMGEVRKARELG SV D+ERR+RA NVAM+LAALLGD
Sbjct: 7 ISFWRQAQAAVPVLALRSAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDPGDG------TGFGTG-AETAPEPAESGLEGGDAAAAEG--LQERRSRCLGWCLDHGFEYVEADCRDSYTGGELREKEGVPRIVEALQSNVWTGMEFLSSNRPSLMAAVATAAAGGSRNDGAAGDGGNVGGTGSVSGSSXXXXXXXAALSFAXXXXGGHEASEYLDGFVDVDDEGGEYAGYGALDSGDEEEGGDGXXXXXXXXXXXXXXXXXXXXVEEGGAGA--PREGRGG--VVVDPSHIELQARWEQQDHSSSSSPGAG-DATNAAAADTALPSEEQAA----RSCNDQQGAAAPGRDTAPSH--DGGK-----NNAEILPSKPGD------SVASTPADGTTAPGG--SCAGQSXXXXXXXXSCRGAXXXXXXEGTGDGEAAS--KESEEYLLEAAGSMVGGIGGDLEGDEMERLMGEVRKARELGGSVSDEERRSRAANVAMRLAALLGD 498
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: A0A835Z725_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z725_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.200e-21 Identity = 67/197 (34.01%), Postives = 98/197 (49.75%), Query Frame = 1
Query: 259 ILIEQAATTFDVYPAVITTKYYNAEVSFWRQAQA-SVPVL----ALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDLLTEEAEEGGASAGGAGFGQSLAETARAEGRGGXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELREKEGVPRVVEALQSNVWTGM 834
+L+E A F + + TKYY+ ++ FW Q + S+ + A+ +A G+EGII + D+ Q+ +F+ +W F D+RD A R+ V SK L + +A+ A+G + RR + WCLDHG EY+EA+C GG+ REKEGVPRVVEALQS W +
Sbjct: 22 VLLEAAGARFAQHAWPLHTKYYSTQIRFWEQRELPSISAVHEDGAIHAAAGEHGVEGIIAVFDVTQDDAFESVREWGTFCDERDALALRLLVASKASHLRK---------------LQMADLF-ADG--------------DEMERRREVYIHWCLDHGFEYIEANCCRPDLGGDTREKEGVPRVVEALQSTAWASI 188
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: A0A7S0VVT7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VVT7_9CRYP) HSP 1 Score: 65.9 bits (159), Expect = 5.460e-9 Identity = 48/179 (26.82%), Postives = 78/179 (43.58%), Query Frame = 1
Query: 307 ITTKYYNAEVSFWRQAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDLLTEEAEEGGASAGGAGFGQSLAETARAEGRGGXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELREKEGVPRVVEALQSNVWTGMEFR 843
+ TKY++A V A+ P + EG++++ D+ ++SF+ +W AF+D+ D A +CV +K D+ + ERR + WCLD GLE VE + + GE R+ EG+ RV+EAL S+ W+GM+ +
Sbjct: 6 VRTKYFSAAVV---PKVAASPNHLVADDVDFGDCEGLVLVFDMCDDTSFERLKEWDAFLDEVDP-AVALCVANKADVAAT---------------------------------------LPGMDERRDTWISWCLDKGLELVECSALNDEVRGE-RDAEGLERVIEALGSHTWSGMKVK 140
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: A0A1S3Z9U5_TOBAC (uncharacterized protein LOC107784559 n=8 Tax=Nicotiana TaxID=4085 RepID=A0A1S3Z9U5_TOBAC) HSP 1 Score: 69.7 bits (169), Expect = 9.810e-9 Identity = 62/207 (29.95%), Postives = 92/207 (44.44%), Query Frame = 1
Query: 295 YPAVITTKYYNAEVSFW-RQAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRI--CVGSKLDLLTEEAEEGGASAGGAGFGQSLAETARAEGRG--------GXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELR---EKEGVPRVVEALQSNVWTGMEFRTDNR---PSL 864
YP I TKYYNA+VS W + AL + + L L +++ D+ SSF W V D F I C+G+KLDLL + + + L ++A + GR E ++ CL+WCL+H +EYVEA +V L + +GV R+ AL + +W GM ++ +R PSL
Sbjct: 58 YPWTINTKYYNADVSIWVAHLHEDFSIGALPAFDHLIAL---VLVFDISDLSSFVALKDW---VSRTDILTFEILLCIGNKLDLLPGHSAH-------VEYRRRLLKSADSSGRPYIELDSGISETEGSSLLGDDDTSLEYKKSCLDWCLEHNIEYVEACASNVDFDKCLSVDGDSQGVERLFGALSAYMWPGMILKSGDRITEPSL 251
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: UPI001CB9375C (uncharacterized protein LOC122599526 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9375C) HSP 1 Score: 67.8 bits (164), Expect = 3.810e-8 Identity = 59/214 (27.57%), Postives = 94/214 (43.93%), Query Frame = 1
Query: 295 YPAVITTKYYNAEVSFWR-QAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDL----------------LTEEAEEGGASAGGAGFGQSLAETARAEGRGGXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELR----EKEGVPRVVEALQSNVWTGMEFR---TDNRPSL 864
Y I TKYY A++S W + + +Q+A L +++ DL SSF + ++W + D R+ +C+G+K DL L E AE G + G SL + + E +R C+EWCL+H +EY+EA C R + + +GV R++ AL +++W GM + T +PSL
Sbjct: 58 YGWTINTKYYTADISMWMAHLSKEFSITGMPMFDQVAAL---VMVFDLNNLSSFSELVKWVSHNDIRN-FDILLCIGNKADLVPGHPAHVEYRRRLLNLDESAESGFSEI----EGSSLLGDEESS-----------------LLEIKRSCMEWCLEHNIEYIEA-CASNPRFDKCLSVDGDSQGVERLLGALSAHMWPGMVLKSGDTIKQPSL 245
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: A0A3N7G3N3_POPTR (Uncharacterized protein n=8 Tax=Saliceae TaxID=238069 RepID=A0A3N7G3N3_POPTR) HSP 1 Score: 66.6 bits (161), Expect = 9.700e-8 Identity = 57/196 (29.08%), Postives = 88/196 (44.90%), Query Frame = 1
Query: 307 ITTKYYNAEVSFW-RQAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDLLT---------EEAEEGGASAGGAGFGQSLAETARAEGRGGXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELR---EKEGVPRVVEALQSNVWTGMEFRTDNR 855
I TKYY A+VS W + +L +LA L +++ DL SSF W A +D + +C+G+K+D + + + G S L E +E G RE +R C+EWC DHG+EY+EA +V L + +GV R+ AL +++W GM ++DN+
Sbjct: 58 IDTKYYTADVSLWIAHLHEGFSIGSLPIYNKLAAL---VMVFDLSDLSSFVALKDWVAG-NDISKFEILLCIGNKVDRIPGHPVHAEYRRQLRKIGESGSFDDLNIELDEFGISEIEGSSLLGDEEEPS----REIKRSCIEWCTDHGIEYIEACASNVDFDKCLLVDGDSQGVERLYGALSAHMWPGMILKSDNK 245
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: A0A251TPJ0_HELAN (Putative GTP binding protein n=4 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TPJ0_HELAN) HSP 1 Score: 63.9 bits (154), Expect = 6.080e-7 Identity = 54/212 (25.47%), Postives = 93/212 (43.87%), Query Frame = 1
Query: 295 YPAVITTKYYNAEVSFWRQAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDLLT---------------EEAEEGGASAGGAGFGQSLAETARAEGRGGXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELR----EKEGVPRVVEALQSNVWTGMEFR---TDNRPSL 864
Y I TKYY A+VS W + ++ L + ++++ DL SSF + +W + +D +C+G+K DL+ +E+ E G ++ET + G + +R C+EWCL+H +EY+EA C R + + +GV R++ AL +++W GM + T N+P+L
Sbjct: 50 YRWTINTKYYTADVSMWMAHLFNE--FSITGTPMLNQVAALVMVFDLNNMSSFSELKKWVS-CNDIQNFDILLCIGNKADLVPGHSAHIEYRRHLLNLDESSECG-----------ISETEGSSLLG----------DEESSTDVKRSCMEWCLEHNIEYIEA-CASNPRFDKCLSVDGDSQGVERLLGALSAHMWPGMVLKSGDTINQPTL 236
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: A0A2J6L613_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6L613_LACSA) HSP 1 Score: 63.9 bits (154), Expect = 6.440e-7 Identity = 54/210 (25.71%), Postives = 92/210 (43.81%), Query Frame = 1
Query: 295 YPAVITTKYYNAEVSFWRQAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDL--------------LTEEAEEGGASAGGAGFGQSLAETARAEGRGGXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELR---EKEGVPRVVEALQSNVWTGMEFR---TDNRPSL 864
Y I TKYY A+VS W + ++ + ++++ DL +SSF + +W + +D + +C+G+K DL L + +E G G SL E + E ++ C+EWCL+H +EY+EA + Q L + +GV R++ AL +++W GM + T ++PSL
Sbjct: 54 YGWTINTKYYTADVSMWMAHLFNE--FSITGVPMFDQITALVMVFDLNNQSSFSELKKWVSR-NDIGKFDILLCIGNKADLVVGHSAHIEYRRHVLNQSSEYGIEET----EGSSLLEDESSS---------------SSSLEIKKSCMEWCLEHNIEYIEACASNPQFDKCLSVDGDSQGVERLLGALSAHMWPGMILKSGQTISQPSL 241
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Match: A0A5A7QW10_STRAF (CM0216.310.nc protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QW10_STRAF) HSP 1 Score: 63.2 bits (152), Expect = 1.080e-6 Identity = 56/195 (28.72%), Postives = 90/195 (46.15%), Query Frame = 1
Query: 307 ITTKYYNAEVSFWRQAQASVPVLALRSAEQLAGLEGIIVLIDLRQESSFDDAMQWAAFVDDRDQCAFRICVGSKLDLLTEEAEEGGASAGGAGFGQSL---AETARAEGRGGXXXXXXXXXXXXXVRERRRRCLEWCLDHGLEYVEADCRDVQRGGELR---EKEGVPRVVEALQSNVWTGMEFRTDNR---PSL 864
I TKYY+A+VS W + L++ S+ + ++++ DL SS +W A D + + +C+G+K+DL+ + +SL E +E G E +R CLEWCLDH +EYVEA + L + +GV R+ AL +++W GM ++ +R PSL
Sbjct: 35 INTKYYSADVSVWMAHLSDT--LSVASSPIVDRAVALVMVFDLTDLSSLAALQEWVARTDIQ-RFDILLCIGNKVDLVPDHPAHMEYKRRFMRQEESLLGFTEYGISETEGSSLLREEETNS-----ELKRSCLEWCLDHNIEYVEACASNADFDKCLSVEGDSQGVERLYGALSAHMWPGMLLKSGDRINEPSL 221 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1407.3219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1407.3219.1 >prot_H-canaliculatus_F_contig1407.3219.1 ID=prot_H-canaliculatus_F_contig1407.3219.1|Name=mRNA_H-canaliculatus_F_contig1407.3219.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=478bp MQWAAFVDDRDQCAFRICVGSKLDLLTEEAEEGGASAGGAGFGQSLAETAback to top mRNA from alignment at H-canaliculatus_F_contig1407:13801..21676- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1407.3219.1 ID=mRNA_H-canaliculatus_F_contig1407.3219.1|Name=mRNA_H-canaliculatus_F_contig1407.3219.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7876bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1407:13801..21676- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1407:13801..21676- >mRNA_H-canaliculatus_F_contig1407.3219.1 ID=mRNA_H-canaliculatus_F_contig1407.3219.1|Name=mRNA_H-canaliculatus_F_contig1407.3219.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2868bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1407:13801..21676- (Hapterophycus canaliculatus Oshoro5f female)back to top |