mRNA_H-canaliculatus_F_contig1405.3210.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1405.3210.1
Unique NamemRNA_H-canaliculatus_F_contig1405.3210.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1405.3210.1 vs. uniprot
Match: D7FQ16_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ16_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 8.810e-72
Identity = 134/185 (72.43%), Postives = 150/185 (81.08%), Query Frame = 3 
Query:  546 QTSVTLLKLNTAVGHDLAALLSMSLVDVLAARGPALHRLVVAAAVQSPKXXXXPTAAATIPPDAVCTFSCGVGSDESSSSSVSSFPSLSKLPPLPTGARIADLFLTTLVRLCELEGLPLTVLARVGYRTTGAAADVDGTDEAINSLGQCLAEAMGLEFSSEKACGARRSKGWRGAAPAQLVPGYI 1100
            + SVTLLKLNTAVG  L+A LS+SLVD+L AR   L RL++AAAVQ PK    P  AATIPPDAVCTFSCG G D +SS   +S   LS LP LPTGARIAD FLTTLVRLC LE +PLTVLARVGYRTTGAAADVDGTDEAIN LGQCLA+A+GLEF+S +ACG RRSKGW+G+  AQ+VPGYI
Sbjct:   87 EPSVTLLKLNTAVGQGLSASLSLSLVDLLVARRTTLDRLIIAAAVQPPKRHQIPAEAATIPPDAVCTFSCG-GVDSNSSPLPAS---LSTLPSLPTGARIADSFLTTLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNRACGVRRSKGWKGSPSAQVVPGYI 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1405.3210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ16_ECTSI8.810e-7272.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1405contigH-canaliculatus_F_contig1405:3411..6753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007850.1
Exons4
Model size1891
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1405.3210.1prot_H-canaliculatus_F_contig1405.3210.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1405 3593..5896 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929155.0229237-UTR-H-canaliculatus_F_contig1405:3410..35921622929155.0229237-UTR-H-canaliculatus_F_contig1405:3410..3592Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1405 3411..3592 +
1696845697.8002455-UTR-H-canaliculatus_F_contig1405:3410..35921696845697.8002455-UTR-H-canaliculatus_F_contig1405:3410..3592Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1405 3411..3592 +
1622929155.0895114-UTR-H-canaliculatus_F_contig1405:5896..62801622929155.0895114-UTR-H-canaliculatus_F_contig1405:5896..6280Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1405 5897..6280 +
1696845697.84038-UTR-H-canaliculatus_F_contig1405:5896..62801696845697.84038-UTR-H-canaliculatus_F_contig1405:5896..6280Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1405 5897..6280 +
1622929155.1079524-UTR-H-canaliculatus_F_contig1405:6349..67531622929155.1079524-UTR-H-canaliculatus_F_contig1405:6349..6753Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1405 6350..6753 +
1696845697.850591-UTR-H-canaliculatus_F_contig1405:6349..67531696845697.850591-UTR-H-canaliculatus_F_contig1405:6349..6753Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1405 6350..6753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929155.0393379-CDS-H-canaliculatus_F_contig1405:3592..41111622929155.0393379-CDS-H-canaliculatus_F_contig1405:3592..4111Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1405 3593..4111 +
1696845697.8091407-CDS-H-canaliculatus_F_contig1405:3592..41111696845697.8091407-CDS-H-canaliculatus_F_contig1405:3592..4111Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1405 3593..4111 +
1622929155.0542128-CDS-H-canaliculatus_F_contig1405:4580..48471622929155.0542128-CDS-H-canaliculatus_F_contig1405:4580..4847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1405 4581..4847 +
1696845697.8182993-CDS-H-canaliculatus_F_contig1405:4580..48471696845697.8182993-CDS-H-canaliculatus_F_contig1405:4580..4847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1405 4581..4847 +
1622929155.069261-CDS-H-canaliculatus_F_contig1405:5761..58961622929155.069261-CDS-H-canaliculatus_F_contig1405:5761..5896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1405 5762..5896 +
1696845697.8262603-CDS-H-canaliculatus_F_contig1405:5761..58961696845697.8262603-CDS-H-canaliculatus_F_contig1405:5761..5896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1405 5762..5896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1405.3210.1

>prot_H-canaliculatus_F_contig1405.3210.1 ID=prot_H-canaliculatus_F_contig1405.3210.1|Name=mRNA_H-canaliculatus_F_contig1405.3210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=307bp
MDHDKRLTTARGSFSEAAQAFVGVALLVAMYARGVVSPHTPPRSVSRFGR
CKIDAPFLSTHLITSSLRAPRVSASLASHGTKGLKLETLCGHRSTSSRLV
QDPESVLHSASPFRTPRVVFSQTSVTLLKLNTAVGHDLAALLSMSLVDVL
AARGPALHRLVVAAAVQSPKRHQLPTAAATIPPDAVCTFSCGVGSDESSS
SSVSSFPSLSKLPPLPTGARIADLFLTTLVRLCELEGLPLTVLARVGYRT
TGAAADVDGTDEAINSLGQCLAEAMGLEFSSEKACGARRSKGWRGAAPAQ
LVPGYI*
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mRNA from alignment at H-canaliculatus_F_contig1405:3411..6753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1405.3210.1 ID=mRNA_H-canaliculatus_F_contig1405.3210.1|Name=mRNA_H-canaliculatus_F_contig1405.3210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3343bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1405:3411..6753+ (Hapterophycus canaliculatus Oshoro5f female)
TCGTGTTGATTCTATTTGCAATGATCCTGCGCGACCATGGCTTCTCGAAC
CGCACTCTAGCGAAAAGAGAGCTACTTTGAGATGGGCCACGGCACAGATA
AGACACTGACGGGTGTTCTCCGAGAATCGAGCGTGCACGGAAATGCGCCG
GCGGGCCTCTTGCTCTTTCCGTGAAGAGGAACATGGACCATGATAAAAGG
CTCACTACGGCTCGAGGGAGCTTTTCGGAGGCGGCGCAAGCTTTCGTGGG
CGTAGCGCTGCTTGTCGCTATGTATGCTAGAGGGGTTGTCTCCCCCCACA
CGCCACCTCGAAGCGTTTCGCGCTTTGGTCGATGTAAAATTGATGCACCC
TTTCTCTCAACACACCTCATCACCTCATCGCTCCGCGCACCTCGGGTATC
GGCTTCGCTAGCGTCTCATGGAACGAAAGGCTTAAAACTTGAAACATTAT
GTGGGCATCGTTCCACTTCGTCCCGTCTTGTCCAAGACCCTGAGTCTGTT
TTGCACTCGGCCTCTCCTTTTCGTACCCCACGCGTCGTTTTCTCGCAGAC
CTCCGTTACCCTGCTGAAGCTCAACACCGCGGTCGGCCACGATCTCGCGG
CGTTGTTGTCCATGTCCCTCGTCGACGTGCTAGCCGCGCGCGGGCCGGCT
CTTCACAGGCTGGTCGTCGCGGCCGCTGTGCAGTCCCCCAAGAGACACCA
GGTACGCACCGGCTTGAGTTCGGGTTGCCTACGGCTGGGCTTACCTGTGT
TTACCCCTACGAGCTCTCCGGCGATGCGTGCGAGGTCTGTAGATCATTGA
GTACTCCCATGCTGCTGCTGCCGCTACGGTGGGCTCGCTGACTGTGTTCT
AGTCCGGCTGCGTGGGCCGTCGGCTGTCTTTTGCCGCTGCATCTTGCGTC
GATGCGGCGACGATGCTGCTGCGTCTTGAGCTTTCAAGCCGTCCCGGAGG
TTTGAGACCGGTTTCGCGACAGTTTGCGCAACCACGACCACTCGACGCCC
ACGTCTGTGGACTTCGCCCTTGTGTGAAACCTTCCACCTCCACCACCCTT
GATCGCCACAAGTCCCACCGCCCGCACTCGCCACCGACCATTTCTTCCGT
CCTTCGGCTACGAAAACACTCTCACGTTATACGCTTCGCTCCTCCTCTTC
CCCGCCGCGTAAACGTTCAGCTCCCGACAGCAGCAGCGACAATCCCGCCG
GACGCTGTGTGCACCTTCTCCTGCGGCGTCGGAAGCGACGAAAGCTCCTC
CTCTTCGGTCTCCTCTTTCCCTTCCTTGTCCAAGCTCCCGCCGCTGCCGA
CCGGGGCACGCATTGCCGACCTCTTCCTGACGACTCTCGTGCGGCTCTGC
GAGCTGGAGGGGCTGCCGTTGACAGTGCTGGCGCGGGTGGGTTACCGCAC
CACGGGAGCCGCGGCGGACGTTGATGGAACTGACGAGGTGATTGGAGGGT
GTCTGTGACGCAAGGAAAAACGAAGCGGGTCTTGTTGGGCGGGGGGGGGC
TGGCGGGGGCGGCGGTGGTAGGAGCGAAAGAGGACAAGTGGCTGAGCGGC
AGGCCAATGGCCGGGACTTTTTAAAAGAACACATTAAAAGACCGTTTGAA
CTTTCGTCGAGCTTCTTGAGAAGTTTTTGTTATTCCTCTTTTGAGAGGTC
GAACGAAGACGAAATTCTAGGGATGGAGGCTCGGAAGGTAGAACTGACTC
ATCCCAGCAAGTATATATGCCCGGATTGACATCGCTTTCCTCATTCTTCA
CATGAAGTTATTAATTCCAACCACGTGCATCTCACTGCAATCCATCCGTA
TTTCACTGCACGGAATCTCACGGCCTTCTTGTTTGGTTGATGTTGTCCCG
TCCAACACACTGGACCCTCAATGTATGGGATTCAACACGGGCCTCTTGAG
ACGCGTGCTGCGACAAACGTGGCTCAGAGGGTATTTCTTCCGTGTCGTTA
ACTATTTTTCATAAAAATCGTGCGCCTTGTATCATAGGCCGTCGAGCTTT
TCGCCGTGCAGAGGATCGAGACGCTGTTGTACATCTCTAGAAGCCAAAAA
TTATGTATCTCTGCAGTTTTTCGTGTTTGAAATTTGGATGCTTCTTGCCC
CTCTCACAAGAGGTAGATTGTGAGAATGTATGCCACCTTTGATGCGGTTT
CACGAACGAGAACGGTACACGACGCTCACGTTGCGCGTGGTGTATTGCCC
AGTCCGTCGCGTTGCAATCTGACGAGCTTCGTTTAGACTCTTCTCAGGAT
TTACGAAAACCTAGAGTGACATCGCACAGGCATGCGTGAAGTTTAGAGTC
CACCAAGACCCAAATGTGCGATCGTTTCGCCTTTGCTGGTGGGATCCGCA
GGCGATCAACAGCCTTGGGCAATGCCTTGCAGAGGCGATGGGATTGGAGT
TCAGCTCGGAGAAGGCGTGCGGAGCACGAAGATCAAAGGGGTGGAGAGGC
GCGGCACCAGCACAGCTTGTACCCGGGTACATTTAGCGCAGTCAGGCCTA
CTCAAGACAGAGTTCGATTATCAGCGGGACTGGCGTAGCGTGTATGTACG
ATCTCCCTGTGTGAAGGGGCAAGCTAGTAGCAAGATTCCGCGACACGCTG
ACAGCGACCTTCGGGGGCGGGGCCGCGGCTTGTGGGTTGTGAAGGGTTCC
ACCCGAGCCGCCGACTCGTGCCCCTTGACTGGCAGGACAGAGATAGGGGT
AGAAAAGGCAAGTTGTTGTCGCCGTGAACGAAGGACGCGGGTGTTTTGTA
TATGGTGGTTTCGTCTTCCAGAGCGCGACTTTTCACTGAGTCGTTGAAGC
TCGCCTGGTCGTACAAAGCGCTTGTTCTGGACCTTCGGAATGCGGCTGAT
CTGGTCCAGCTTCCTTTGCAGCACGAAAGGGGTGGCTCAAGCTCGCAGAT
GCGAGCCGCTTACACCCTTTCAAAAGTGGTATTTTCAAGCCCCCCCCCCC
CCCCCCCCGATATGGCGAAGAAACGAAGGGCAGCCCTGCGAATCAGGAGA
TCCGACCGAAAATGGCAATACCACATCTGAGCACTTGCATTTTTTTACCT
TGATGCGCGGTTTGTTTCTCTTTCTGGTGAGATCTATGACGGGGGCGCCG
GGCCGTTCATGTTTGTTGCGCGCCAAGGAGGCATCGTGTGCTGAACTTGG
TTTCCTATCTCCTGTGTCTGGGGGAGCAAATCTACGGGCTATGGGCTTTG
ATTTTGAAAGGTCGGAATGTTGCAGCCGAGCTGCCTCACAGGGCTCCAGA
CGTCCTTCCGCGAACAAGGAGTGCTCCTGTGACAAGAGTTCGAGGCCATT
TGCCAGGGACGCACCCAATCTAATTTAACGTGTCTTGATCGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1405:3411..6753+

>mRNA_H-canaliculatus_F_contig1405.3210.1 ID=mRNA_H-canaliculatus_F_contig1405.3210.1|Name=mRNA_H-canaliculatus_F_contig1405.3210.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1842bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1405:3411..6753+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCATGATAAAAGGCTCACTACGGCTCGAGGGAGCTTTTCGGAGGC
GGCGCAAGCTTTCGTGGGCGTAGCGCTGCTTGTCGCTATGTATGCTAGAG
GGGTTGTCTCCCCCCACACGCCACCTCGAAGCGTTTCGCGCTTTGGTCGA
TGTAAAATTGATGCACCCTTTCTCTCAACACACCTCATCACCTCATCGCT
CCGCGCACCTCGGGTATCGGCTTCGCTAGCGTCTCATGGAACGAAAGGCT
TAAAACTTGAAACATTATGTGGGCATCGTTCCACTTCGTCCCGTCTTGTC
CAAGACCCTGAGTCTGTTTTGCACTCGGCCTCTCCTTTTCGTACCCCACG
CGTCGTTTTCTCGCAGACCTCCGTTACCCTGCTGAAGCTCAACACCGCGG
TCGGCCACGATCTCGCGGCGTTGTTGTCCATGTCCCTCGTCGACGTGCTA
GCCGCGCGCGGGCCGGCTCTTCACAGGCTGGTCGTCGCGGCCGCTGTGCA
GTCCCCCAAGAGACACCAGATGGACCATGATAAAAGGCTCACTACGGCTC
GAGGGAGCTTTTCGGAGGCGGCGCAAGCTTTCGTGGGCGTAGCGCTGCTT
GTCGCTATGTATGCTAGAGGGGTTGTCTCCCCCCACACGCCACCTCGAAG
CGTTTCGCGCTTTGGTCGATGTAAAATTGATGCACCCTTTCTCTCAACAC
ACCTCATCACCTCATCGCTCCGCGCACCTCGGGTATCGGCTTCGCTAGCG
TCTCATGGAACGAAAGGCTTAAAACTTGAAACATTATGTGGGCATCGTTC
CACTTCGTCCCGTCTTGTCCAAGACCCTGAGTCTGTTTTGCACTCGGCCT
CTCCTTTTCGTACCCCACGCGTCGTTTTCTCGCAGACCTCCGTTACCCTG
CTGAAGCTCAACACCGCGGTCGGCCACGATCTCGCGGCGTTGTTGTCCAT
GTCCCTCGTCGACGTGCTAGCCGCGCGCGGGCCGGCTCTTCACAGGCTGG
TCGTCGCGGCCGCTGTGCAGTCCCCCAAGAGACACCAGCTCCCGACAGCA
GCAGCGACAATCCCGCCGGACGCTGTGTGCACCTTCTCCTGCGGCGTCGG
AAGCGACGAAAGCTCCTCCTCTTCGGTCTCCTCTTTCCCTTCCTTGTCCA
AGCTCCCGCCGCTGCCGACCGGGGCACGCATTGCCGACCTCTTCCTGACG
ACTCTCGTGCGGCTCTGCGAGCTGGAGGGGCTGCCGTTGACAGTGCTGGC
GCGGGTGGGTTACCGCACCACGGGAGCCGCGGCGGACGTTGATGGAACTG
ACGAGCTCCCGACAGCAGCAGCGACAATCCCGCCGGACGCTGTGTGCACC
TTCTCCTGCGGCGTCGGAAGCGACGAAAGCTCCTCCTCTTCGGTCTCCTC
TTTCCCTTCCTTGTCCAAGCTCCCGCCGCTGCCGACCGGGGCACGCATTG
CCGACCTCTTCCTGACGACTCTCGTGCGGCTCTGCGAGCTGGAGGGGCTG
CCGTTGACAGTGCTGGCGCGGGTGGGTTACCGCACCACGGGAGCCGCGGC
GGACGTTGATGGAACTGACGAGGCGATCAACAGCCTTGGGCAATGCCTTG
CAGAGGCGATGGGATTGGAGTTCAGCTCGGAGAAGGCGTGCGGAGCACGA
AGATCAAAGGGGTGGAGAGGCGCGGCACCAGCACAGCTTGTACCCGGGTA
CATTTAGGCGATCAACAGCCTTGGGCAATGCCTTGCAGAGGCGATGGGAT
TGGAGTTCAGCTCGGAGAAGGCGTGCGGAGCACGAAGATCAAAGGGGTGG
AGAGGCGCGGCACCAGCACAGCTTGTACCCGGGTACATTTAG
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