mRNA_H-canaliculatus_F_contig14042.3209.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14042.3209.1
Unique NamemRNA_H-canaliculatus_F_contig14042.3209.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: D7G789_ECTSI (Alpha-glucosidase II alpha subunit, family GH31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G789_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 1.230e-63
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            VAAHGRR VTIVDPHIKRD+ YAVHKEATAKGLYIKDK+GNDFDGWCWPGQSSYLDFTDE VREWWASRFAL++YEGSTLDLYTWNDMNEPSVFNGPEVSM
Sbjct:   66 VAAHGRRMVTIVDPHIKRDAKYAVHKEATAKGLYIKDKDGNDFDGWCWPGQSSYLDFTDEGVREWWASRFALEEYEGSTLDLYTWNDMNEPSVFNGPEVSM 166
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: A0A6H5KLR8_9PHAE (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR8_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 2.440e-62
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            VAAHGRR VTIVDPHIKRD  YAVHKEATAKGLYIKDK+GNDFDGWCWPGQSSYLDFTDE VREWWASRFAL++YEGSTLDLYTWNDMNEPSVFNGPEVSM
Sbjct:  517 VAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGNDFDGWCWPGQSSYLDFTDEGVREWWASRFALEEYEGSTLDLYTWNDMNEPSVFNGPEVSM 617
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: A0A812W0T6_SYMMI (ModA protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W0T6_SYMMI)

HSP 1 Score: 191 bits (486), Expect = 1.190e-59
Identity = 83/101 (82.18%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            ++AHGR+ VTIVDPHIKRD+ YA+H EAT KGLYIK+ +G DFDGWCWPGQSSYLDFTD  VREWWA RFALD+YEGSTLDL+TWNDMNEPSVFNGPEVSM
Sbjct:   88 ISAHGRKMVTIVDPHIKRDNGYAIHTEATEKGLYIKNHQGKDFDGWCWPGQSSYLDFTDARVREWWAGRFALDKYEGSTLDLFTWNDMNEPSVFNGPEVSM 188
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: A0A7S4DBU0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU0_HETAK)

HSP 1 Score: 186 bits (472), Expect = 9.960e-54
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            VAAHGRR VTIVDPH+KRD+NY +HK AT KG Y+KD++G DFDGWCWPG SSYLDFT E VR WWA +FALD Y+GSTLDL+TWNDMNEPSVFNGPEVSM
Sbjct:  150 VAAHGRRMVTIVDPHVKRDANYRIHKIATDKGYYVKDRDGEDFDGWCWPGASSYLDFTSEEVRSWWADQFALDTYQGSTLDLFTWNDMNEPSVFNGPEVSM 250
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: A0A7S2STM5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STM5_9STRA)

HSP 1 Score: 187 bits (475), Expect = 3.970e-53
Identity = 79/101 (78.22%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            ++AHGRR VTI+DPHIKRD+NY +H+EAT KGLYIK+K+G+DFDGWCWPG SSYLDFT  +VREWWA + ALD+YEGST+DLYTWNDMNEPSVFNGPEV+M
Sbjct:  481 LSAHGRRMVTIIDPHIKRDNNYYIHREATEKGLYIKNKDGDDFDGWCWPGSSSYLDFTQPHVREWWAQQLALDKYEGSTMDLYTWNDMNEPSVFNGPEVTM 581
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: A0A4D9D2P9_9STRA (Gal_mutarotas_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2P9_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.740e-51
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            +AA GR+ VTI+DPHIKRD N+A+H EATAKGLY+KDK G DFDG+CWPGQSSYLDFTD  VR WWA RFALD+Y GST +LYTWNDMNEPSVFNGPEVSM
Sbjct:  510 LAAQGRKMVTIIDPHIKRDDNFAIHSEATAKGLYVKDKFGADFDGFCWPGQSSYLDFTDAGVRRWWAERFALDKYTGSTSNLYTWNDMNEPSVFNGPEVSM 610
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: A0A7S1C9T9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9T9_9STRA)

HSP 1 Score: 169 bits (429), Expect = 6.490e-51
Identity = 72/101 (71.29%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            +A  GR+ VTIVDPHIKRD  Y VH EA+ +GLY+++K+G +FDGWCWPG SSYLDFTD  VR WW+ RF L+ YEGSTL L+TWNDMNEPSVFNGPEVSM
Sbjct:  124 LAERGRKMVTIVDPHIKRDPGYHVHSEASREGLYVRNKDGGEFDGWCWPGSSSYLDFTDARVRSWWSDRFLLENYEGSTLSLFTWNDMNEPSVFNGPEVSM 224
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: A0A812UNB7_9DINO (ModA protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UNB7_9DINO)

HSP 1 Score: 179 bits (455), Expect = 1.950e-50
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            +AA G + VTIVDPHIKRD+ YAVH EAT+KGLYIKDK G D DGWCWPG SSYLDFT  +VREWWA RF+LD Y+GSTL+L+TWNDMNEPSVFNGPEVSM
Sbjct:  443 LAARGHKMVTIVDPHIKRDNAYAVHSEATSKGLYIKDKHGGDLDGWCWPGSSSYLDFTAPHVREWWADRFSLDNYQGSTLNLFTWNDMNEPSVFNGPEVSM 543
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: A0A7S2A9D9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9D9_TRICV)

HSP 1 Score: 175 bits (443), Expect = 7.090e-50
Identity = 77/100 (77.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    7 AHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGN-DFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            + GRR VTI+DPHIKRDS Y VHKEAT+KGLYIKDK+GN D+DGWCWPG SSYLDFT + VR WWA +FA D+Y+GST  L+TWNDMNEPSVFNGPEVSM
Sbjct:   90 SQGRRMVTIIDPHIKRDSKYHVHKEATSKGLYIKDKDGNKDYDGWCWPGSSSYLDFTSDRVRSWWADQFAYDKYQGSTPSLFTWNDMNEPSVFNGPEVSM 189
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BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Match: B7FVT3_PHATC (Alpha subunit of glucosidase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVT3_PHATC)

HSP 1 Score: 176 bits (446), Expect = 1.060e-49
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGN-DFDGWCWPGQSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVSM 303
            +A  GRR VTIVDPHI RD+NY +HKEATAKGLYIKDK+G  D+DGWCWPG SSYLDFTDENVR WWA +F+  +YEGST  L+TWNDMNEPSVFNGPEVSM
Sbjct:  231 LADQGRRMVTIVDPHILRDNNYYIHKEATAKGLYIKDKQGEKDYDGWCWPGSSSYLDFTDENVRSWWADQFSYSRYEGSTPTLFTWNDMNEPSVFNGPEVSM 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14042.3209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G789_ECTSI1.230e-6393.07Alpha-glucosidase II alpha subunit, family GH31 n=... [more]
A0A6H5KLR8_9PHAE2.440e-6293.07Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
A0A812W0T6_SYMMI1.190e-5982.18ModA protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A7S4DBU0_HETAK9.960e-5479.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2STM5_9STRA3.970e-5378.22Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A4D9D2P9_9STRA4.740e-5179.21Gal_mutarotas_2 domain-containing protein n=2 Tax=... [more]
A0A7S1C9T9_9STRA6.490e-5171.29Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812UNB7_9DINO1.950e-5078.22ModA protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7S2A9D9_TRICV7.090e-5077.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B7FVT3_PHATC1.060e-4977.45Alpha subunit of glucosidase n=3 Tax=Phaeodactylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14042contigH-canaliculatus_F_contig14042:1417..2382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue1.9e-52
Seed eggNOG ortholog2880.D7G789
Preferred nameROT2
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K01187,ko:K05546
KEGG ReactionR00028,R00801,R00802,R05980,R05981,R06087,R06088
KEGG Pathwayko00052,ko00500,ko00510,ko01100,ko04141,map00052,map00500,map00510,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0000271,GO:0000902,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006073,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009250,GO:0009272,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009826,GO:0009987,GO:0010035,GO:0010038,GO:0010383,GO:0012505,GO:0015926,GO:0016043,GO:0016049,GO:0016051,GO:0016787,GO:0016798,GO:0017177,GO:0019538,GO:0030243,GO:0030244,GO:0030587,GO:0031288,GO:0031974,GO:0032502,GO:0032989,GO:0032991,GO:0033692,GO:0033919,GO:0034406,GO:0034637,GO:0034645,GO:0036211,GO:0040007,GO:0042221,GO:0042546,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048589,GO:0048856,GO:0048869,GO:0050896,GO:0051273,GO:0051274,GO:0051278,GO:0051703,GO:0051704,GO:0051707,GO:0060560,GO:0070013,GO:0070085,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0090599,GO:0090600,GO:0090702,GO:0098542,GO:0099120,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.alpha-1,3-glucosidase activity
EggNOG OGsCOG1501@1,KOG1066@2759
EC3.2.1.20,3.2.1.84
COG Functional cat.G
CAZyGH31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.967329-CDS-H-canaliculatus_F_contig14042:1416..15391622929154.967329-CDS-H-canaliculatus_F_contig14042:1416..1539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14042 1417..1539 +
1696845697.7718244-CDS-H-canaliculatus_F_contig14042:1416..15391696845697.7718244-CDS-H-canaliculatus_F_contig14042:1416..1539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14042 1417..1539 +
1622929154.97949-CDS-H-canaliculatus_F_contig14042:2202..23821622929154.97949-CDS-H-canaliculatus_F_contig14042:2202..2382Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14042 2203..2382 +
1696845697.789777-CDS-H-canaliculatus_F_contig14042:2202..23821696845697.789777-CDS-H-canaliculatus_F_contig14042:2202..2382Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14042 2203..2382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14042.3209.1prot_H-canaliculatus_F_contig14042.3209.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14042 1417..2382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14042.3209.1

>prot_H-canaliculatus_F_contig14042.3209.1 ID=prot_H-canaliculatus_F_contig14042.3209.1|Name=mRNA_H-canaliculatus_F_contig14042.3209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
VAAHGRRTVTIVDPHIKRDSNYAVHKEATAKGLYIKDKEGNDFDGWCWPG
QSSYLDFTDENVREWWASRFALDQYEGSTLDLYTWNDMNEPSVFNGPEVS
M
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mRNA from alignment at H-canaliculatus_F_contig14042:1417..2382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14042.3209.1 ID=mRNA_H-canaliculatus_F_contig14042.3209.1|Name=mRNA_H-canaliculatus_F_contig14042.3209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=966bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14042:1417..2382+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGCCGCCCACGGCCGTCGGACGGTGACGATCGTCGACCCCCACATCAA
ACGCGACTCCAACTACGCCGTTCACAAGGAGGCGACGGCTAAGGGCCTCT
ACATCAAGGACAAGGAAGGCAACGTAAGTTTCCCATTTTGCAGCAGCGGC
GGCGGCGGCGGCGGGGCGGGGGGGGGGGGGGGGTTGGGCGAGGATCTTCC
TCGCTTCTTTCATCATTTTTTTTGTCCTTTTTTCTTGTGCCTCCCACGGA
AACGTCGACGTTCGGCGTCGTGCGGATGACCGTCCGTGATCCCGTCGACA
TATACTGTACATACTTGTGCGTGTGTAGGTGTTGCGTTTTCTCCCGGAAC
TCGTACGACGACTCCCTCGTGTTTCGTTCGTTCTGGGATGCGCTTGTTGG
CTTTGGTCTTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGTCC
GCCTGGTGTGTGGTGGTTGGCAAGCTCCGGGAGTTTGCCTTCTCTTCGTA
CCCTTTGAGCAACGGTCCGGATCAAACGCCGGCGCAGTTGCTAGCAGCAC
CAGCGCCACCGCCGGTGTGGTTGACGAACACCCCGTCGCGTCCGGATCGT
GGCAAGCCCAATTATCATCGGTTGTTCTCAGCACTCCCGCAACGCTTCCG
ACGGGTGGTGCTGGCCGGCCGAATCGAAAGTTCGCTTGTGTCTGTAGAAG
CCACTCCCCCCCCCCCCCCTCCATCAAGAAATAAAAACGTCGACAAGAAA
AAGTCAAAGGAAAATGTCACGCTCAATTCCCACCAGGATTTCGACGGGTG
GTGCTGGCCGGGTCAGTCGAGCTACCTGGACTTCACGGACGAGAATGTAC
GGGAGTGGTGGGCCTCGAGGTTCGCGCTCGACCAGTACGAGGGCAGCACC
CTGGACCTGTACACGTGGAACGACATGAACGAGCCCAGCGTTTTCAACGG
GCCGGAGGTTAGCATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14042:1417..2382+

>mRNA_H-canaliculatus_F_contig14042.3209.1 ID=mRNA_H-canaliculatus_F_contig14042.3209.1|Name=mRNA_H-canaliculatus_F_contig14042.3209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14042:1417..2382+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGCCGCCCACGGCCGTCGGACGGTGACGATCGTCGACCCCCACATCAA
ACGCGACTCCAACTACGCCGTTCACAAGGAGGCGACGGCTAAGGGCCTCT
ACATCAAGGACAAGGAAGGCAACGTGGCCGCCCACGGCCGTCGGACGGTG
ACGATCGTCGACCCCCACATCAAACGCGACTCCAACTACGCCGTTCACAA
GGAGGCGACGGCTAAGGGCCTCTACATCAAGGACAAGGAAGGCAACGATT
TCGACGGGTGGTGCTGGCCGGGTCAGTCGAGCTACCTGGACTTCACGGAC
GAGAATGTACGGGAGTGGTGGGCCTCGAGGTTCGCGCTCGACCAGTACGA
GGGCAGCACCCTGGACCTGTACACGTGGAACGACATGAACGAGCCCAGCG
TTTTCAACGGGCCGGAGGTTAGCATGGATTTCGACGGGTGGTGCTGGCCG
GGTCAGTCGAGCTACCTGGACTTCACGGACGAGAATGTACGGGAGTGGTG
GGCCTCGAGGTTCGCGCTCGACCAGTACGAGGGCAGCACCCTGGACCTGT
ACACGTGGAACGACATGAACGAGCCCAGCGTTTTCAACGGGCCGGAGGTT
AGCATG
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