mRNA_H-canaliculatus_F_contig1404.3206.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1404.3206.1
Unique NamemRNA_H-canaliculatus_F_contig1404.3206.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1404.3206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1404contigH-canaliculatus_F_contig1404:17755..18403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size649
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1404.3206.1prot_H-canaliculatus_F_contig1404.3206.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1404 17792..18397 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.2058294-UTR-H-canaliculatus_F_contig1404:17754..177911622929154.2058294-UTR-H-canaliculatus_F_contig1404:17754..17791Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1404 17755..17791 +
1696845697.4914653-UTR-H-canaliculatus_F_contig1404:17754..177911696845697.4914653-UTR-H-canaliculatus_F_contig1404:17754..17791Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1404 17755..17791 +
1622929154.2311983-UTR-H-canaliculatus_F_contig1404:18397..184031622929154.2311983-UTR-H-canaliculatus_F_contig1404:18397..18403Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1404 18398..18403 +
1696845697.5120628-UTR-H-canaliculatus_F_contig1404:18397..184031696845697.5120628-UTR-H-canaliculatus_F_contig1404:18397..18403Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1404 18398..18403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.220698-CDS-H-canaliculatus_F_contig1404:17791..183971622929154.220698-CDS-H-canaliculatus_F_contig1404:17791..18397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1404 17792..18397 +
1696845697.5026205-CDS-H-canaliculatus_F_contig1404:17791..183971696845697.5026205-CDS-H-canaliculatus_F_contig1404:17791..18397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1404 17792..18397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1404.3206.1

>prot_H-canaliculatus_F_contig1404.3206.1 ID=prot_H-canaliculatus_F_contig1404.3206.1|Name=mRNA_H-canaliculatus_F_contig1404.3206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MTIRKRSYGVTSLFSRFPLRYECASVTNVPCCTNDGNQAEKGMSGVSGVS
GLFRCWHLCLIAFRAWIVLETRVAVALPFTGASGVEQRSLLGTKHLFAAR
VPSPHRVGKLWPTPTRGCPSSILDFNRPATSARLSTLQRMERTATASRKL
PKRAALSTEDVLRNARRHDARSHAPTKASRQETNHPPNQRANRGKGLKHS
L*
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mRNA from alignment at H-canaliculatus_F_contig1404:17755..18403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1404.3206.1 ID=mRNA_H-canaliculatus_F_contig1404.3206.1|Name=mRNA_H-canaliculatus_F_contig1404.3206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=649bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1404:17755..18403+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGCGAGGAACGGGATGGGGGGGGGTCGGGTAGGAAATGACGATCAGAA
AAAGAAGCTACGGTGTTACTAGCCTCTTCTCTCGGTTCCCGTTGCGTTAC
GAATGTGCCAGCGTTACGAATGTGCCATGTTGCACAAACGATGGAAACCA
GGCTGAAAAAGGAATGAGTGGGGTTAGTGGGGTCAGCGGCTTGTTCAGGT
GCTGGCATCTATGTTTGATAGCTTTCAGAGCTTGGATCGTTCTCGAAACG
CGCGTCGCCGTAGCGCTACCCTTCACGGGTGCGTCTGGTGTCGAGCAACG
TAGTCTCCTTGGCACCAAACATTTGTTCGCCGCGCGAGTCCCATCACCGC
ACCGTGTGGGAAAACTCTGGCCAACGCCAACCCGTGGATGTCCATCCAGC
ATTCTGGATTTCAATCGACCCGCCACGAGCGCACGCCTCTCAACCCTGCA
ACGTATGGAGCGAACTGCAACAGCATCGCGGAAGCTTCCAAAACGGGCCG
CTTTGTCGACGGAAGATGTGCTTAGAAACGCACGGCGCCATGATGCCAGG
AGCCATGCGCCAACGAAGGCTTCGCGACAAGAAACCAACCACCCGCCGAA
CCAACGCGCCAACCGGGGGAAAGGCCTGAAGCACTCACTCTGAGCCGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1404:17755..18403+

>mRNA_H-canaliculatus_F_contig1404.3206.1 ID=mRNA_H-canaliculatus_F_contig1404.3206.1|Name=mRNA_H-canaliculatus_F_contig1404.3206.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1404:17755..18403+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGATCAGAAAAAGAAGCTACGGTGTTACTAGCCTCTTCTCTCGGTT
CCCGTTGCGTTACGAATGTGCCAGCGTTACGAATGTGCCATGTTGCACAA
ACGATGGAAACCAGGCTGAAAAAGGAATGAGTGGGGTTAGTGGGGTCAGC
GGCTTGTTCAGGTGCTGGCATCTATGTTTGATAGCTTTCAGAGCTTGGAT
CGTTCTCGAAACGCGCGTCGCCGTAGCGCTACCCTTCACGGGTGCGTCTG
GTGTCGAGCAACGTAGTCTCCTTGGCACCAAACATTTGTTCGCCGCGCGA
GTCCCATCACCGCACCGTGTGGGAAAACTCTGGCCAACGCCAACCCGTGG
ATGTCCATCCAGCATTCTGGATTTCAATCGACCCGCCACGAGCGCACGCC
TCTCAACCCTGCAACGTATGGAGCGAACTGCAACAGCATCGCGGAAGCTT
CCAAAACGGGCCGCTTTGTCGACGGAAGATGTGCTTAGAAACGCACGGCG
CCATGATGCCAGGAGCCATGCGCCAACGAAGGCTTCGCGACAAGAAACCA
ACCACCCGCCGAACCAACGCGCCAACCGGGGGAAAGGCCTGAAGCACTCA
CTCTGAATGACGATCAGAAAAAGAAGCTACGGTGTTACTAGCCTCTTCTC
TCGGTTCCCGTTGCGTTACGAATGTGCCAGCGTTACGAATGTGCCATGTT
GCACAAACGATGGAAACCAGGCTGAAAAAGGAATGAGTGGGGTTAGTGGG
GTCAGCGGCTTGTTCAGGTGCTGGCATCTATGTTTGATAGCTTTCAGAGC
TTGGATCGTTCTCGAAACGCGCGTCGCCGTAGCGCTACCCTTCACGGGTG
CGTCTGGTGTCGAGCAACGTAGTCTCCTTGGCACCAAACATTTGTTCGCC
GCGCGAGTCCCATCACCGCACCGTGTGGGAAAACTCTGGCCAACGCCAAC
CCGTGGATGTCCATCCAGCATTCTGGATTTCAATCGACCCGCCACGAGCG
CACGCCTCTCAACCCTGCAACGTATGGAGCGAACTGCAACAGCATCGCGG
AAGCTTCCAAAACGGGCCGCTTTGTCGACGGAAGATGTGCTTAGAAACGC
ACGGCGCCATGATGCCAGGAGCCATGCGCCAACGAAGGCTTCGCGACAAG
AAACCAACCACCCGCCGAACCAACGCGCCAACCGGGGGAAAGGCCTGAAG
CACTCACTCTGA
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