mRNA_H-canaliculatus_F_contig14039.3204.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14039.3204.1
Unique NamemRNA_H-canaliculatus_F_contig14039.3204.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14039.3204.1 vs. uniprot
Match: D7FZJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ4_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.550e-6
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 2 
Query:  404 QVTKPGDRWLGSPVMTFRQRHEGGDEQIS 490
            QV  PGD WLGSP + FRQRHEGGDEQIS
Sbjct:  823 QVINPGDMWLGSPALAFRQRHEGGDEQIS 851
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14039.3204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZJ4_ECTSI3.550e-679.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14039contigH-canaliculatus_F_contig14039:1711..2200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size491
Cds size483
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.157781-UTR-H-canaliculatus_F_contig14039:1710..17171622929154.157781-UTR-H-canaliculatus_F_contig14039:1710..1717Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14039 1711..1717 +
1696845697.465857-UTR-H-canaliculatus_F_contig14039:1710..17171696845697.465857-UTR-H-canaliculatus_F_contig14039:1710..1717Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14039 1711..1717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.171058-CDS-H-canaliculatus_F_contig14039:1717..22001622929154.171058-CDS-H-canaliculatus_F_contig14039:1717..2200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14039 1718..2200 +
1696845697.4803379-CDS-H-canaliculatus_F_contig14039:1717..22001696845697.4803379-CDS-H-canaliculatus_F_contig14039:1717..2200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14039 1718..2200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14039.3204.1prot_H-canaliculatus_F_contig14039.3204.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14039 1718..2200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14039.3204.1

>prot_H-canaliculatus_F_contig14039.3204.1 ID=prot_H-canaliculatus_F_contig14039.3204.1|Name=mRNA_H-canaliculatus_F_contig14039.3204.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=161bp
MNRKVYLFFISFLPFSLACPEHICSTAFGSEGSAMVKPSPGLSEVGQSAP
HLEKVRGSFFKEALFRKTPSPTSVDRRRTPPGTITSVRRGGASMPPEVYK
RSIVWTPSPLNRGCCLRASTLARSHLPFHPPSQVTKPGDRWLGSPVMTFR
QRHEGGDEQIS
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mRNA from alignment at H-canaliculatus_F_contig14039:1711..2200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14039.3204.1 ID=mRNA_H-canaliculatus_F_contig14039.3204.1|Name=mRNA_H-canaliculatus_F_contig14039.3204.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=490bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14039:1711..2200+ (Hapterophycus canaliculatus Oshoro5f female)
CAAAAGCATGAACAGAAAAGTGTATTTATTTTTTATTTCGTTTCTTCCGT
TTTCGCTTGCCTGTCCCGAGCACATTTGCTCGACCGCGTTCGGAAGCGAG
GGCTCCGCGATGGTAAAACCGTCACCGGGCTTGAGCGAGGTGGGACAATC
TGCTCCTCACCTGGAAAAGGTCAGAGGCAGTTTCTTCAAGGAGGCCCTCT
TTCGGAAAACGCCTTCACCTACATCTGTCGACCGAAGGAGAACACCACCC
GGAACAATCACGTCAGTCCGGCGGGGGGGGGCATCGATGCCCCCCGAAGT
TTATAAGAGAAGTATCGTCTGGACCCCCTCACCCTTGAATCGTGGTTGCT
GTTTGCGCGCATCCACTCTCGCTCGGTCCCACCTCCCTTTCCACCCCCCC
TCTCAGGTCACGAAACCCGGGGATAGATGGCTAGGGTCCCCTGTCATGAC
GTTTCGGCAGAGGCACGAGGGGGGGGACGAGCAGATCTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14039:1711..2200+

>mRNA_H-canaliculatus_F_contig14039.3204.1 ID=mRNA_H-canaliculatus_F_contig14039.3204.1|Name=mRNA_H-canaliculatus_F_contig14039.3204.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=966bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14039:1711..2200+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACAGAAAAGTGTATTTATTTTTTATTTCGTTTCTTCCGTTTTCGCT
TGCCTGTCCCGAGCACATTTGCTCGACCGCGTTCGGAAGCGAGGGCTCCG
CGATGGTAAAACCGTCACCGGGCTTGAGCGAGGTGGGACAATCTGCTCCT
CACCTGGAAAAGGTCAGAGGCAGTTTCTTCAAGGAGGCCCTCTTTCGGAA
AACGCCTTCACCTACATCTGTCGACCGAAGGAGAACACCACCCGGAACAA
TCACGTCAGTCCGGCGGGGGGGGGCATCGATGCCCCCCGAAGTTTATAAG
AGAAGTATCGTCTGGACCCCCTCACCCTTGAATCGTGGTTGCTGTTTGCG
CGCATCCACTCTCGCTCGGTCCCACCTCCCTTTCCACCCCCCCTCTCAGG
TCACGAAACCCGGGGATAGATGGCTAGGGTCCCCTGTCATGACGTTTCGG
CAGAGGCACGAGGGGGGGGACGAGCAGATCTCGATGAACAGAAAAGTGTA
TTTATTTTTTATTTCGTTTCTTCCGTTTTCGCTTGCCTGTCCCGAGCACA
TTTGCTCGACCGCGTTCGGAAGCGAGGGCTCCGCGATGGTAAAACCGTCA
CCGGGCTTGAGCGAGGTGGGACAATCTGCTCCTCACCTGGAAAAGGTCAG
AGGCAGTTTCTTCAAGGAGGCCCTCTTTCGGAAAACGCCTTCACCTACAT
CTGTCGACCGAAGGAGAACACCACCCGGAACAATCACGTCAGTCCGGCGG
GGGGGGGCATCGATGCCCCCCGAAGTTTATAAGAGAAGTATCGTCTGGAC
CCCCTCACCCTTGAATCGTGGTTGCTGTTTGCGCGCATCCACTCTCGCTC
GGTCCCACCTCCCTTTCCACCCCCCCTCTCAGGTCACGAAACCCGGGGAT
AGATGGCTAGGGTCCCCTGTCATGACGTTTCGGCAGAGGCACGAGGGGGG
GGACGAGCAGATCTCG
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