mRNA_H-canaliculatus_F_contig1403.3203.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1403.3203.1
Unique NamemRNA_H-canaliculatus_F_contig1403.3203.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1403.3203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1403contigH-canaliculatus_F_contig1403:21837..22788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size952
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1403.3203.1prot_H-canaliculatus_F_contig1403.3203.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1403 22004..22609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929153.3351572-UTR-H-canaliculatus_F_contig1403:21836..220031622929153.3351572-UTR-H-canaliculatus_F_contig1403:21836..22003Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1403 21837..22003 +
1696845697.2003171-UTR-H-canaliculatus_F_contig1403:21836..220031696845697.2003171-UTR-H-canaliculatus_F_contig1403:21836..22003Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1403 21837..22003 +
1622929153.3591864-UTR-H-canaliculatus_F_contig1403:22609..227881622929153.3591864-UTR-H-canaliculatus_F_contig1403:22609..22788Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1403 22610..22788 +
1696845697.2196095-UTR-H-canaliculatus_F_contig1403:22609..227881696845697.2196095-UTR-H-canaliculatus_F_contig1403:22609..22788Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1403 22610..22788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929153.3473525-CDS-H-canaliculatus_F_contig1403:22003..226091622929153.3473525-CDS-H-canaliculatus_F_contig1403:22003..22609Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 22004..22609 +
1696845697.209848-CDS-H-canaliculatus_F_contig1403:22003..226091696845697.209848-CDS-H-canaliculatus_F_contig1403:22003..22609Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1403 22004..22609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1403.3203.1

>prot_H-canaliculatus_F_contig1403.3203.1 ID=prot_H-canaliculatus_F_contig1403.3203.1|Name=mRNA_H-canaliculatus_F_contig1403.3203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MCRKPRGNDDNTQSGPNHLIRNERWDTRRCQPILDHPTPTRDAAQPEATR
QQSVYIKDATGGHTEGSTSSALLGTSLASHASRTNCLSPSGDGSSGPMLM
SGSGSYLKTKPPSPPHRIKQGRRNNEKTLPDLWYTRGGSAWKLQIVSRRN
KIKFSFPLATNRGLSDGRSIGVRGRKVEQNLATSQSYHRPPRSCSGILHS
S*
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mRNA from alignment at H-canaliculatus_F_contig1403:21837..22788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1403.3203.1 ID=mRNA_H-canaliculatus_F_contig1403.3203.1|Name=mRNA_H-canaliculatus_F_contig1403.3203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=952bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1403:21837..22788+ (Hapterophycus canaliculatus Oshoro5f female)
GGTCCTGTGCCTTCACACTCGAGGGCAATGACTCGAGCTGTTCTTGAATA
AAAAAACATACGTGCGTCGCCCCATACCCCGCGCACAAGACGCGCTGTCC
CGAAAACATCCAAGCCACGCGCACAACACAAGCACGGGTCGGGTGTAGGG
CTTGCCGACAAGGATCGATGTGCAGGAAGCCTCGCGGAAACGACGACAAC
ACGCAGAGTGGTCCAAACCATCTCATCCGCAACGAGAGGTGGGATACGCG
ACGATGCCAACCGATCCTAGATCACCCCACCCCCACTCGTGACGCAGCGC
AGCCCGAAGCAACCCGCCAGCAATCAGTGTACATTAAAGATGCAACTGGG
GGTCATACTGAGGGAAGCACCTCCTCTGCTCTTTTGGGTACATCGTTGGC
ATCTCACGCGTCGCGGACGAACTGCCTTTCCCCTTCTGGCGACGGTTCGT
CCGGACCAATGCTGATGTCCGGGTCAGGGTCATATTTAAAGACAAAACCC
CCTTCACCCCCTCACCGAATAAAACAAGGGAGACGAAATAACGAAAAAAC
ACTGCCAGACTTGTGGTACACCAGAGGAGGATCGGCGTGGAAGCTACAAA
TCGTCTCACGTCGCAACAAAATAAAATTTTCTTTCCCACTCGCGACAAAC
AGGGGGTTGAGCGATGGGCGCTCGATTGGGGTTCGTGGCCGCAAGGTCGA
GCAAAACCTCGCGACAAGCCAGTCGTACCACCGTCCACCCCGCTCTTGTT
CAGGGATACTGCACTCGTCATGACACGGGTCCCCAGCAGGGTGCAGCTGC
TGCTGCAGCTGCCGCCCACGGAACCCTAGCCGCGAACGGGTCGCGCGGAC
TTCGACAGCGACGAAGCGGGCCCCACCACGGGTTGCACTAGGTCCACCGC
CACTTCACTTGACAAATCCCCGACCGGGTGACGGCAGACGGGGGGCGAAA
GC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1403:21837..22788+

>mRNA_H-canaliculatus_F_contig1403.3203.1 ID=mRNA_H-canaliculatus_F_contig1403.3203.1|Name=mRNA_H-canaliculatus_F_contig1403.3203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1403:21837..22788+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCAGGAAGCCTCGCGGAAACGACGACAACACGCAGAGTGGTCCAAA
CCATCTCATCCGCAACGAGAGGTGGGATACGCGACGATGCCAACCGATCC
TAGATCACCCCACCCCCACTCGTGACGCAGCGCAGCCCGAAGCAACCCGC
CAGCAATCAGTGTACATTAAAGATGCAACTGGGGGTCATACTGAGGGAAG
CACCTCCTCTGCTCTTTTGGGTACATCGTTGGCATCTCACGCGTCGCGGA
CGAACTGCCTTTCCCCTTCTGGCGACGGTTCGTCCGGACCAATGCTGATG
TCCGGGTCAGGGTCATATTTAAAGACAAAACCCCCTTCACCCCCTCACCG
AATAAAACAAGGGAGACGAAATAACGAAAAAACACTGCCAGACTTGTGGT
ACACCAGAGGAGGATCGGCGTGGAAGCTACAAATCGTCTCACGTCGCAAC
AAAATAAAATTTTCTTTCCCACTCGCGACAAACAGGGGGTTGAGCGATGG
GCGCTCGATTGGGGTTCGTGGCCGCAAGGTCGAGCAAAACCTCGCGACAA
GCCAGTCGTACCACCGTCCACCCCGCTCTTGTTCAGGGATACTGCACTCG
TCATGAATGTGCAGGAAGCCTCGCGGAAACGACGACAACACGCAGAGTGG
TCCAAACCATCTCATCCGCAACGAGAGGTGGGATACGCGACGATGCCAAC
CGATCCTAGATCACCCCACCCCCACTCGTGACGCAGCGCAGCCCGAAGCA
ACCCGCCAGCAATCAGTGTACATTAAAGATGCAACTGGGGGTCATACTGA
GGGAAGCACCTCCTCTGCTCTTTTGGGTACATCGTTGGCATCTCACGCGT
CGCGGACGAACTGCCTTTCCCCTTCTGGCGACGGTTCGTCCGGACCAATG
CTGATGTCCGGGTCAGGGTCATATTTAAAGACAAAACCCCCTTCACCCCC
TCACCGAATAAAACAAGGGAGACGAAATAACGAAAAAACACTGCCAGACT
TGTGGTACACCAGAGGAGGATCGGCGTGGAAGCTACAAATCGTCTCACGT
CGCAACAAAATAAAATTTTCTTTCCCACTCGCGACAAACAGGGGGTTGAG
CGATGGGCGCTCGATTGGGGTTCGTGGCCGCAAGGTCGAGCAAAACCTCG
CGACAAGCCAGTCGTACCACCGTCCACCCCGCTCTTGTTCAGGGATACTG
CACTCGTCATGA
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