mRNA_H-canaliculatus_F_contig14029.3199.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14029.3199.1
Unique NamemRNA_H-canaliculatus_F_contig14029.3199.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14029.3199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14029contigH-canaliculatus_F_contig14029:452..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929153.2990792-CDS-H-canaliculatus_F_contig14029:451..8231622929153.2990792-CDS-H-canaliculatus_F_contig14029:451..823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14029 452..823 +
1696845697.1906204-CDS-H-canaliculatus_F_contig14029:451..8231696845697.1906204-CDS-H-canaliculatus_F_contig14029:451..823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14029 452..823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14029.3199.1prot_H-canaliculatus_F_contig14029.3199.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14029 452..823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14029.3199.1

>prot_H-canaliculatus_F_contig14029.3199.1 ID=prot_H-canaliculatus_F_contig14029.3199.1|Name=mRNA_H-canaliculatus_F_contig14029.3199.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
SITLPHPLLERLLVGECSTCHRARCSRGRSHHRQSFIRRVVVLFPFSATP
ATQQRRRGRRRRQQPLKVATRARPLLSPSGARHVHLRICACSSAALPRRV
LVGGCSRLGPPGVAVAVVVAVDVA
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mRNA from alignment at H-canaliculatus_F_contig14029:452..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14029.3199.1 ID=mRNA_H-canaliculatus_F_contig14029.3199.1|Name=mRNA_H-canaliculatus_F_contig14029.3199.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=374bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14029:452..825+ (Hapterophycus canaliculatus Oshoro5f female)
AGCATAACCCTCCCGCATCCCCTCCTCGAACGCCTCCTCGTGGGAGAATG
CTCCACCTGCCACCGCGCCCGATGCTCGAGAGGCCGTTCCCATCACCGCC
AGAGCTTCATCCGCCGGGTTGTCGTCCTTTTCCCCTTTTCGGCCACCCCC
GCCACGCAGCAACGACGACGAGGACGACGAAGACGACAACAACCCTTGAA
GGTCGCCACCCGCGCACGTCCTCTTCTGTCTCCGAGCGGCGCCCGACACG
TTCACCTGCGTATCTGCGCTTGCTCGAGCGCGGCCCTTCCACGCCGCGTC
CTCGTCGGTGGATGCAGCAGACTTGGACCTCCCGGTGTTGCTGTCGCTGT
CGTCGTCGCCGTTGATGTCGCCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14029:452..825+

>mRNA_H-canaliculatus_F_contig14029.3199.1 ID=mRNA_H-canaliculatus_F_contig14029.3199.1|Name=mRNA_H-canaliculatus_F_contig14029.3199.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14029:452..825+ (Hapterophycus canaliculatus Oshoro5f female)
AGCATAACCCTCCCGCATCCCCTCCTCGAACGCCTCCTCGTGGGAGAATG
CTCCACCTGCCACCGCGCCCGATGCTCGAGAGGCCGTTCCCATCACCGCC
AGAGCTTCATCCGCCGGGTTGTCGTCCTTTTCCCCTTTTCGGCCACCCCC
GCCACGCAGCAACGACGACGAGGACGACGAAGACGACAACAACCCTTGAA
GGTCGCCACCCGCGCACGTCCTCTTCTGTCTCCGAGCGGCGCCCGACACG
TTCACCTGCGTATCTGCGCTTGCTCGAGCGCGGCCCTTCCACGCCGCGTC
CTCGTCGGTGGATGCAGCAGACTTGGACCTCCCGGTGTTGCTGTCGCTGT
CGTCGTCGCCGTTGATGTCGCCAGCATAACCCTCCCGCATCCCCTCCTCG
AACGCCTCCTCGTGGGAGAATGCTCCACCTGCCACCGCGCCCGATGCTCG
AGAGGCCGTTCCCATCACCGCCAGAGCTTCATCCGCCGGGTTGTCGTCCT
TTTCCCCTTTTCGGCCACCCCCGCCACGCAGCAACGACGACGAGGACGAC
GAAGACGACAACAACCCTTGAAGGTCGCCACCCGCGCACGTCCTCTTCTG
TCTCCGAGCGGCGCCCGACACGTTCACCTGCGTATCTGCGCTTGCTCGAG
CGCGGCCCTTCCACGCCGCGTCCTCGTCGGTGGATGCAGCAGACTTGGAC
CTCCCGGTGTTGCTGTCGCTGTCGTCGTCGCCGTTGATGTCGCC
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