mRNA_H-canaliculatus_F_contig14022.3196.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14022.3196.1
Unique NamemRNA_H-canaliculatus_F_contig14022.3196.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14022.3196.1 vs. uniprot
Match: D8LFL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL5_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.060e-57
Identity = 131/255 (51.37%), Postives = 146/255 (57.25%), Query Frame = 1 
Query:    1 QNVGVSDPECLSGQGGAIHASGSGITLAGVTLVRNRCETGALDTGCAGGAVSLTGRGPSISAASAVAGTEDGGA-----VFDDCLFEGNEARGAATSSIYSGAGQGGATAIRFALPTFTGCNFTGNAAEGGGG-----------------------------------AAPATGGAVLLFLSRGDADGGGDGAESXXXXXXXXXXXXXXXXXTAWRSRTQGHGIGGALAAIASSPLLTGCSFTNNTAVALFPSSA 645
            ++VG SDP CLSGQGG IH SGS ITL+GV+L RNRCETGALD GC+GGAVSLTGRGP  +AA A               FDDCLFEGNEARGAAT+++YSGAGQGGA AIRFA P FTGCNFTGNAAEG                                        P T   V    +   A  GG   +                     R   QGHGIGGALAAIASSPLL+GCSF NN+AVA+FPSS+
Sbjct:  134 EDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQATAAVAXXXXXXXXXXXXXXAFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPT--FVNCKFTSNIAGSGGVPTDGNALG----------------RGFRQGHGIGGALAAIASSPLLSGCSFWNNSAVAVFPSSS 370
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BLAST of mRNA_H-canaliculatus_F_contig14022.3196.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 2.400e-53
Identity = 130/253 (51.38%), Postives = 144/253 (56.92%), Query Frame = 1 
Query:    1 QNVGVSDPECLSGQGGAIHASGSGITLAGVTLVRNRCETGALDTGCAGGAVSLTGRGPSISAASAVAGTEDGGA-----VFDDCLFEGNEARGAATSSIYSGAGQGGATAIRFALPTFTGCNFTGNAAEGGGG-----------------------------------AAPATGGAVLLFLSRGDADGGGDGAESXXXXXXXXXXXXXXXXXTAWRSRTQGHGIGGALAAIASSPLLTGCSFTNNTAVALFPS 639
            ++VG SDP CLSGQGG IH SGS ITL+GV+L RNRCETGALD GC+GGAVSLTGRGP  +AA A               FDDCLFEGNEARGAAT+++YSGAGQGGA AIRFA P FTGCNFTGNAAEG                                        P T   V    +   A  GG   +                     R   QGHGIGGALAAIASSPLL+GCSF NN+AVA+FPS
Sbjct:  529 EDVGASDPSCLSGQGGGIHVSGSAITLSGVSLRRNRCETGALDAGCSGGAVSLTGRGPQATAAVAXXXXXXXXXXXXXXAFDDCLFEGNEARGAATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPT--FVNCKFTSNIAGSGGVPTDGNALG----------------RGFRQGHGIGGALAAIASSPLLSGCSFWNNSAVAVFPS 763
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BLAST of mRNA_H-canaliculatus_F_contig14022.3196.1 vs. uniprot
Match: A0A6H5K5Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q8_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.840e-52
Identity = 134/229 (58.52%), Postives = 148/229 (64.63%), Query Frame = 1 
Query:    1 QNVGVSDPECLSGQGGAIHASGSGITLAGVTLVRNRCETGALDTGCAGGAVSLTGRGPSISAASAVAGTEDGG------AVFDDCLFEGNEARGAATSSIYSGAGQGGATAIRFALPTFTGCNFTGNAAEGGGGAAPATGGAVLLFLSRGDADGGGDGAESXXXXXXXXXXXXXXXXX----------TAWRSRTQGHGIGGALAAIASSPLLTGCSFTNNTAVALFPS 639
            ++VG SDP CLSGQGG IH SGS I+L+GV++ RNRCETGALD GC+GGAVSLTGRGP   A +AVAG           A FDDCLFE NEARGAAT+++YSGAGQGGA AIRFA P FTGCNFTGN AEG                              XXXXXXXXXXX                   RS   GHGIGGALAAIASSPLL+GCSF NN+AVA+FPS
Sbjct:   15 EDVGASDPSCLSGQGGGIHVSGSAISLSGVSMRRNRCETGALDAGCSGGAVSLTGRGP--QATTAVAGXXXXXXXXXXXATFDDCLFERNEARGAATNNVYSGAGQGGAAAIRFAFPRFTGCNFTGNVAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETPPPTFVSVGFSRRAVVGRSGIPGHGIGGALAAIASSPLLSGCSFWNNSAVAVFPS 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14022.3196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFL5_ECTSI1.060e-5751.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTH4_ECTSI2.400e-5351.38Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K5Q8_9PHAE1.840e-5258.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14022contigH-canaliculatus_F_contig14022:37..2652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue1.6e-48
Seed eggNOG ortholog2880.D7FTH4
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPectin lyase fold
Ec32 orthologEc-04_001770.1
Exons4
Model size648
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14022.3196.1prot_H-canaliculatus_F_contig14022.3196.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14022 37..2652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.9888992-CDS-H-canaliculatus_F_contig14022:36..2381622929152.9888992-CDS-H-canaliculatus_F_contig14022:36..238Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14022 37..238 +
1696845697.089972-CDS-H-canaliculatus_F_contig14022:36..2381696845697.089972-CDS-H-canaliculatus_F_contig14022:36..238Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14022 37..238 +
1622929153.0059323-CDS-H-canaliculatus_F_contig14022:560..6581622929153.0059323-CDS-H-canaliculatus_F_contig14022:560..658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14022 561..658 +
1696845697.1008534-CDS-H-canaliculatus_F_contig14022:560..6581696845697.1008534-CDS-H-canaliculatus_F_contig14022:560..658Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14022 561..658 +
1622929153.022437-CDS-H-canaliculatus_F_contig14022:1212..13861622929153.022437-CDS-H-canaliculatus_F_contig14022:1212..1386Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14022 1213..1386 +
1696845697.1144116-CDS-H-canaliculatus_F_contig14022:1212..13861696845697.1144116-CDS-H-canaliculatus_F_contig14022:1212..1386Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14022 1213..1386 +
1622929153.1286411-CDS-H-canaliculatus_F_contig14022:2478..26521622929153.1286411-CDS-H-canaliculatus_F_contig14022:2478..2652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14022 2479..2652 +
1696845697.1311066-CDS-H-canaliculatus_F_contig14022:2478..26521696845697.1311066-CDS-H-canaliculatus_F_contig14022:2478..2652Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14022 2479..2652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14022.3196.1

>prot_H-canaliculatus_F_contig14022.3196.1 ID=prot_H-canaliculatus_F_contig14022.3196.1|Name=mRNA_H-canaliculatus_F_contig14022.3196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=216bp
QNVGVSDPECLSGQGGAIHASGSGITLAGVTLVRNRCETGALDTGCAGGA
VSLTGRGPSISAASAVAGTEDGGAVFDDCLFEGNEARGAATSSIYSGAGQ
GGATAIRFALPTFTGCNFTGNAAEGGGGAAPATGGAVLLFLSRGDADGGG
DGAESPTFVNCTFAGNRAGAGGTAWRSRTQGHGIGGALAAIASSPLLTGC
SFTNNTAVALFPSSAG
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mRNA from alignment at H-canaliculatus_F_contig14022:37..2652+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14022.3196.1 ID=mRNA_H-canaliculatus_F_contig14022.3196.1|Name=mRNA_H-canaliculatus_F_contig14022.3196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2616bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14022:37..2652+ (Hapterophycus canaliculatus Oshoro5f female)
CAGAACGTGGGGGTGTCAGACCCCGAATGCTTGTCAGGACAGGGCGGTGC
GATTCACGCATCCGGGTCGGGCATCACCCTGGCAGGCGTTACGCTCGTCC
GTAACCGCTGCGAAACGGGCGCTCTGGACACCGGGTGCGCGGGCGGCGCG
GTCAGCCTTACGGGCCGTGGGCCGTCGATTTCTGCGGCGTCCGCCGTGGC
AGGTGCGCTGCGTCGAACGGTTGTCGACAGCCGCTCGAAAGAGGGCGGCG
GGTGCATGTCGGGGCCTGGGTGTCTCGGGTTGTCGGGTACGTTTACCAGT
GCTGGGGAAGCACACCGTGGCCCGGGTCGGCACGGGCGGCTGTGGCTAGT
TTCGAGGTGACGGCTGGACTCGAGGCTTGGAGGTGCCGGGCGTCTCTTGG
ACCGTGTTTTCCACCCTGCACCCACAGCCGCGCACGGTCCAACCTTACGC
AAACCTCCTCCTCGCCCTCCTCCTTTCTCCCGTCCTCGTGCTGCGTTTCG
CGGCACTTGGCCCGTACCCTTCAGGGACCGAAGACGGCGGGGCGGTCTTC
GACGATTGTCTCTTCGAGGGCAACGAGGCGAGAGGAGCGGCCACCAGCAG
CATCTACAGCGGAGCCGGACAGGTTTGAATGGCGTGTGGTTTGGGGGAAC
GGAGGTGCTGCGTTCGGTGGGGAGTCGTGGCGTGTGTGAGTGCCCTCGCG
TGTTTGTACGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCAGCGGAG
GCAGAGGGCGCGCTGGCGCTCAAGACATGGCCTGCCCCCTTCCCCTGCTT
GCCTTGCCGCAGTCTGCCTTACCGTTGTTGTGCCGCTCCCCGTATCGAGG
GGGGCGCGCAGAAAATATTAAGAAGAAGTGGTCTGGAATGATCGGTACAT
GGCCGAGAGACCCTTGAAAGATACCACTCTCCGGAACGCATCGCCAAGAG
GAATTTTGGGCAACTTCTGCCCTCCCCTCCCACCCGCCAAGCACTCAAGG
AACCACCCAGCACCAACCACCCCCCACCGCTCGGGCAGAGCGCCCCACTC
GCTGATCCGCTTCGCCGAAGAAGACCTCCCCGGATGCCCCACAACCGCCG
CCTGCCTCGAACACCCGACCCTTGAAACACCCACCAACACGCAACGAACG
GATACGCGCGCATGCGTTCATGCCAGGGGGGCGCCACGGCAATCCGCTTC
GCCCTCCCGACGTTCACGGGCTGCAACTTCACCGGCAACGCGGCGGAGGG
CGGGGGTGGGGCGGCCCCGGCGACGGGAGGCGCGGTCTTGCTGTTCCTCT
CCCGGGGGGACGCCGACGGCGGCGGCGATGGTGCTGAGTCCCCGACGTTT
GTGAGTGGGTTGCCGTTGTGGCTGCGGCCTGGGGTGGTGAGAAATGATGC
TTGGCTGCTGACGGTTTTTCGCGCTCGCGGCTCGAGGGTGACTCCTAGGG
CGAGGACGACCGCTAGGGGCGTTCGACGAAAAGAGCGTACGGGCTGGGGT
GATGTGGGGTCTCCGTCGGGGCGAGGTGGTAGGGTCGGCGTCGCCACGAG
TGCGTGCGTCACCGGAGTCTGCCCCGTCTAGCCCGCGCTTGCGCCGCCCC
GACAGCCAGTGAGGGTTGAGGAGCGGAGCAAACCTTCGCACACCTGCTTA
TCGCGGGACCTGGTAGACGCCCGAGGGCACAATGACGACGCGCTGCGGTG
TAATTCTTGCTTGCCATGCTGTCGTTCCCTTCGAGGCACTCGTCGTGGCC
GGACTCGTATTTGGAAAGAGCCCCACCCGTTGGCGGTTGACTCGGCAGCA
GCGTACAGGTGGAGCAGGGCACCAAGTCGGACAAGCTCCTGGCGATTATG
ACGAAGACAGCGGTAGTGGTTCATTTGCTGCGCCCGCCTCCTCCCGTACA
TGCCCGGCTGACTGGATAGTGCTCCATAACTCACTCGCCGTTCTGCCGCA
CACCATTCTCCATGGCAGCGCGCACCACCCGTGGAAACCAGCAGGCGACA
GGACCTCGATCCGTGTCCCTTTTCTTTTCAAGGAAGCATTTGCTATCTGG
AGGGGTTGGTCCACCGCACATCGTCGATCGCCCGCCAATTGTACCCACAA
CAAGATCCACTAGCTCGCTCGCTGCCCGTTTGCCGCATGTCGGGGTTCCC
GTTTTCAACAGGACACACGCACACGCGCACTGCGCTGCGCTGAGCTTCAC
GGCTTTTCTGTTCAGGGTTTTGTCCCATCCATACACAAATGAACCCTCAT
TGTTTGGAACTCAACAGAAACCTCGAGCTACGTCTCGCACGACACACCTC
AGGAGGCGTTCCTGCGGTGCTCATCTGTCTTTCTACAAAGTGTCCGCTCG
AACGCCAGGGTGTCGCTAAAGTTGTGTCGCTAAAACGGCGAACTACGCGT
TCGTTGGAACGCCCTTTCGACGCCCGGGTTGTTGCTCTTAAGGTAAACTG
CACGTTTGCCGGGAATCGCGCCGGGGCCGGGGGCACCGCGTGGCGGAGCA
GGACGCAAGGGCACGGGATCGGCGGGGCCCTGGCGGCCATCGCCTCCTCG
CCGCTGCTGACCGGCTGCTCCTTCACGAACAACACCGCGGTGGCGCTTTT
CCCGTCTTCGGCGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14022:37..2652+

>mRNA_H-canaliculatus_F_contig14022.3196.1 ID=mRNA_H-canaliculatus_F_contig14022.3196.1|Name=mRNA_H-canaliculatus_F_contig14022.3196.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1296bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14022:37..2652+ (Hapterophycus canaliculatus Oshoro5f female)
CAGAACGTGGGGGTGTCAGACCCCGAATGCTTGTCAGGACAGGGCGGTGC
GATTCACGCATCCGGGTCGGGCATCACCCTGGCAGGCGTTACGCTCGTCC
GTAACCGCTGCGAAACGGGCGCTCTGGACACCGGGTGCGCGGGCGGCGCG
GTCAGCCTTACGGGCCGTGGGCCGTCGATTTCTGCGGCGTCCGCCGTGGC
AGCAGAACGTGGGGGTGTCAGACCCCGAATGCTTGTCAGGACAGGGCGGT
GCGATTCACGCATCCGGGTCGGGCATCACCCTGGCAGGCGTTACGCTCGT
CCGTAACCGCTGCGAAACGGGCGCTCTGGACACCGGGTGCGCGGGCGGCG
CGGTCAGCCTTACGGGCCGTGGGCCGTCGATTTCTGCGGCGTCCGCCGTG
GCAGGGACCGAAGACGGCGGGGCGGTCTTCGACGATTGTCTCTTCGAGGG
CAACGAGGCGAGAGGAGCGGCCACCAGCAGCATCTACAGCGGAGCCGGAC
AGGGACCGAAGACGGCGGGGCGGTCTTCGACGATTGTCTCTTCGAGGGCA
ACGAGGCGAGAGGAGCGGCCACCAGCAGCATCTACAGCGGAGCCGGACAG
GGGGGCGCCACGGCAATCCGCTTCGCCCTCCCGACGTTCACGGGCTGCAA
CTTCACCGGCAACGCGGCGGAGGGCGGGGGTGGGGCGGCCCCGGCGACGG
GAGGCGCGGTCTTGCTGTTCCTCTCCCGGGGGGACGCCGACGGCGGCGGC
GATGGTGCTGAGTCCCCGACGTTTGGGGGCGCCACGGCAATCCGCTTCGC
CCTCCCGACGTTCACGGGCTGCAACTTCACCGGCAACGCGGCGGAGGGCG
GGGGTGGGGCGGCCCCGGCGACGGGAGGCGCGGTCTTGCTGTTCCTCTCC
CGGGGGGACGCCGACGGCGGCGGCGATGGTGCTGAGTCCCCGACGTTTGT
AAACTGCACGTTTGCCGGGAATCGCGCCGGGGCCGGGGGCACCGCGTGGC
GGAGCAGGACGCAAGGGCACGGGATCGGCGGGGCCCTGGCGGCCATCGCC
TCCTCGCCGCTGCTGACCGGCTGCTCCTTCACGAACAACACCGCGGTGGC
GCTTTTCCCGTCTTCGGCGGGCGTAAACTGCACGTTTGCCGGGAATCGCG
CCGGGGCCGGGGGCACCGCGTGGCGGAGCAGGACGCAAGGGCACGGGATC
GGCGGGGCCCTGGCGGCCATCGCCTCCTCGCCGCTGCTGACCGGCTGCTC
CTTCACGAACAACACCGCGGTGGCGCTTTTCCCGTCTTCGGCGGGC
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