mRNA_H-canaliculatus_F_contig1402.3195.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1402.3195.1
Unique NamemRNA_H-canaliculatus_F_contig1402.3195.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: D7FUB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUB8_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 9.930e-127
Identity = 198/230 (86.09%), Postives = 207/230 (90.00%), Query Frame = 1 
Query:    1 MAHTAAYVLAATAIVSSTTAFAPMGGEPF--APRAAGSGSSA-CRRGRTPATTTAVAPLSMAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVGGLSENAQEVLRERILRLKENEKRKKEEAELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV 681
            MA +AAYVLAATAIVSSTTAF PMGG     AP+A     SA CRRGR      AVAPLSMAIRAVE+FNA+FELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMP DIE+K+FLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKV GLSE+A+ VL ERILRL+ENEKRKKEEAELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV
Sbjct:    1 MARSAAYVLAATAIVSSTTAFVPMGGARLSSAPQATAERRSATCRRGRQTDAAAAVAPLSMAIRAVESFNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKFFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNERILRLRENEKRKKEEAELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV 230
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: A0A836CAF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.340e-37
Identity = 86/190 (45.26%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  148 TTAVAPLSMAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYV-GEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVGGLSENAQEVLRERILRLKENEKRKKEEAELETP-----------WDDIGSAFTEVHNMPVGSDDDDVDLDSMVV 681
            T     LSM I+AV ++++ F L E+  A L  YL+H DM  EVCKQFD  SAEYV GEIFQPVPYS  TP GMP   E+ Y  ++ Y IAN+PPVVMF AKIFKPSRLCAV++V G S  A   LRE     + N   +    + E             W+ +G           G  DDD +LD++V+
Sbjct:   42 TAPATALSMGIKAVRDYDSSFTLSEECTALLTAYLQHPDMAKEVCKQFDLTSAEYVDGEIFQPVPYSPNTPHGMPLAFER-YLNHDDYVIANVPPVVMFKAKIFKPSRLCAVFRVAGRSAAAVAALREAREHAQNNAVPRGAADQSEGSAGAGQSDSGEVWEGLGDVIRASFEEGDGDYDDDDELDALVL 230
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: A0A6U4Q2X6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4Q2X6_HEMAN)

HSP 1 Score: 129 bits (325), Expect = 1.680e-33
Identity = 83/176 (47.16%), Postives = 102/176 (57.95%), Query Frame = 1 
Query:  166 LSMAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVGGLSENAQEVLRERILRLKENEKRK---KEEAELETPWDDIGSAFTEVHNM-PVGSDDDDVDLDSMVV 681
            L M I+AVE+F   F+L ++  A L  +L    M   V KQ    +AE+ G++FQPVPYS  TP GMPAD E+ YFLN  Y I N+PP +MF AK FKPSRLCAVY + G+      V RE IL  KE   R+          +PW  +G A  +   M PV   DDD DLDSMVV
Sbjct:   69 LRMGIKAVEHFEGGFQLSDEVQAALTEHLTSDKMDLTVEKQAHAAAAEFTGKLFQPVPYSVQTPHGMPADFEQ-YFLNPDYAIINVPPQIMFEAKCFKPSRLCAVYALKGVDP----VHREAILSQKEAVSRRGVAPAPPRGGSPWAGMGGAMADASRMDPV---DDDADLDSMVV 236
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: W7TX51_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX51_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.230e-30
Identity = 72/190 (37.89%), Postives = 102/190 (53.68%), Query Frame = 1 
Query:  178 IRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVGGLSENAQEVLRERI---------------LRLKENEKRKKEEAEL------ETPWDDIGSAFTEVH-NMPVGSDDDDVDLDSMVV 681
            +R VE F+  F L  ++   L GY+  +DM  EVCKQ  C SA + G++FQPVPYS  TP GMP + E  + LN  Y I N+PP VMF AKIFKP RLCAV+ + GL  + ++ + E+                +  K++   +K    +      E  W+ +G A  EV      G ++D+  LD+MVV
Sbjct:   48 LRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFED-FHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: A0A8J7F1K5_9CYAN (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J7F1K5_9CYAN)

HSP 1 Score: 114 bits (284), Expect = 6.400e-29
Identity = 54/105 (51.43%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  172 MAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 486
            MA++ +++F++ F LE +  ATL   L ++  + +VC+Q  CE  E+   +FQPVPYS ATP+GMPA+ EK Y  +E+Y I N+PP  MF AKIFKPSRLCA+YK
Sbjct:    1 MALKIIQSFDSNFTLEPQAKATLFELLTNESFLKQVCQQSKCEQVEFTELLFQPVPYSSATPKGMPAEFEK-YHESEEYIILNVPPNFMFQAKIFKPSRLCAIYK 104
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: A0A6P1AAG1_9CYAN (Uncharacterized protein n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AAG1_9CYAN)

HSP 1 Score: 113 bits (283), Expect = 8.780e-29
Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:  172 MAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 486
            MA++ VENF+  F L  +T  TL  +L+++  I ++C+Q   E  E+   +FQPVPYS +TP+GMPA++E  Y+ NE Y I N+PP +MF  KIFKPSRLCA+Y+
Sbjct:    1 MALKIVENFDGSFTLPSETQETLFTFLKNEKFIQQICQQVKAEKLEFTELLFQPVPYSISTPKGMPAELES-YYNNEDYAIVNVPPNLMFQCKIFKPSRLCAIYR 104
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: A0A7S0VGI5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGI5_9CRYP)

HSP 1 Score: 113 bits (282), Expect = 3.230e-28
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:  157 VAPLSMAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVGGLSENAQEVL 522
            +A L M I+AVENF   F+L ++    L G+L    M   V KQ     AE+ G++FQPVPYS  TP GMPAD E+ YFL+  Y I N+PP +MF AK FKPSRLCAV+ + G++   +E +
Sbjct:    1 LAGLRMGIKAVENFEGGFQLSDEVREALTGHLTSDKMELMVEKQAHAADAEFTGKLFQPVPYSVNTPHGMPADCEE-YFLHPDYLIINVPPQIMFEAKCFKPSRLCAVFALKGVAPEQRETV 121
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: A0A0S3TRB2_9CYAN (Uncharacterized protein n=10 Tax=Hapalosiphonaceae TaxID=1892263 RepID=A0A0S3TRB2_9CYAN)

HSP 1 Score: 110 bits (275), Expect = 1.520e-27
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:  172 MAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVGGLSE 504
            MA++ +ENF++ F LE +    L   L  +  + ++C+  +CE  E+   +FQPVPYS ATP+GMPA+ EK Y  +E+Y I N+PP  +F AKIFKPSRLCAVYK  G+ +
Sbjct:    1 MALKIIENFDSSFTLEPQAKENLFKLLTSEAFLNQICQNLECEQVEFTELLFQPVPYSIATPKGMPAEFEK-YHESEEYVIINVPPNFIFTAKIFKPSRLCAVYKKLGIGD 110
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: UPI001CCA52C6 (hypothetical protein n=1 Tax=Kovacikia minuta TaxID=2931930 RepID=UPI001CCA52C6)

HSP 1 Score: 109 bits (272), Expect = 4.140e-27
Identity = 49/107 (45.79%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:  172 MAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVG 492
            M +R +++F+ +F L+ +  ATL   LR++  + +V +Q  C   E+  ++FQPVPYS ATP+GMPA+ E+ Y+ ++ + I N+PP  MF AKIFKPSRLCA+Y+ G
Sbjct:    1 MPLRIIDDFDGDFTLDPEAEATLFELLRNEAFLQQVAQQLQCPKVEFTEQLFQPVPYSAATPKGMPAEFEQ-YYASKDHAIINVPPNFMFKAKIFKPSRLCAIYRKG 106
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Match: K9ZHI2_ANACC (Uncharacterized protein n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) TaxID=272123 RepID=K9ZHI2_ANACC)

HSP 1 Score: 108 bits (270), Expect = 7.790e-27
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:  172 MAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 486
            M+++ V+NF++ F L  +   TL   L  +  ++++C+ + CE  E+   +FQPVPYS ATP+GMPA+ E+ Y  +E Y I N+PP  MFNAKIF+PSRLCA+Y+
Sbjct:    1 MSLKIVQNFDSSFTLAPEAQETLFKLLTSESFLSQICQNWQCEKIEFTEMLFQPVPYSPATPKGMPAEFEQ-YHKSEDYTIINVPPNFMFNAKIFRPSRLCAIYR 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1402.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB8_ECTSI9.930e-12786.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAF1_9STRA1.340e-3745.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4Q2X6_HEMAN1.680e-3347.16Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
W7TX51_9STRA2.230e-3037.89Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A8J7F1K5_9CYAN6.400e-2951.43Uncharacterized protein n=2 Tax=Cyanobacteria TaxI... [more]
A0A6P1AAG1_9CYAN8.780e-2949.52Uncharacterized protein n=1 Tax=Kamptonema sp. SIO... [more]
A0A7S0VGI5_9CRYP3.230e-2848.36Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0S3TRB2_9CYAN1.520e-2747.75Uncharacterized protein n=10 Tax=Hapalosiphonaceae... [more]
UPI001CCA52C64.140e-2745.79hypothetical protein n=1 Tax=Kovacikia minuta TaxI... [more]
K9ZHI2_ANACC7.790e-2746.67Uncharacterized protein n=1 Tax=Anabaena cylindric... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1402contigH-canaliculatus_F_contig1402:3511..8131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.2
Seed ortholog evalue7.1e-100
Seed eggNOG ortholog2880.D7FUB8
EggNOG OGs2D7JV@1,2ST2X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_000820.1
Exons6
Model size684
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1402.3195.1prot_H-canaliculatus_F_contig1402.3195.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1402 3511..8131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.806443-CDS-H-canaliculatus_F_contig1402:3510..36491622929152.806443-CDS-H-canaliculatus_F_contig1402:3510..3649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 3511..3649 -
1696845697.0130398-CDS-H-canaliculatus_F_contig1402:3510..36491696845697.0130398-CDS-H-canaliculatus_F_contig1402:3510..3649Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 3511..3649 -
1622929152.8177345-CDS-H-canaliculatus_F_contig1402:4326..44661622929152.8177345-CDS-H-canaliculatus_F_contig1402:4326..4466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 4327..4466 -
1696845697.0261188-CDS-H-canaliculatus_F_contig1402:4326..44661696845697.0261188-CDS-H-canaliculatus_F_contig1402:4326..4466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 4327..4466 -
1622929152.8388867-CDS-H-canaliculatus_F_contig1402:4900..49891622929152.8388867-CDS-H-canaliculatus_F_contig1402:4900..4989Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 4901..4989 -
1696845697.0363498-CDS-H-canaliculatus_F_contig1402:4900..49891696845697.0363498-CDS-H-canaliculatus_F_contig1402:4900..4989Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 4901..4989 -
1622929152.85424-CDS-H-canaliculatus_F_contig1402:5527..56181622929152.85424-CDS-H-canaliculatus_F_contig1402:5527..5618Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 5528..5618 -
1696845697.0500598-CDS-H-canaliculatus_F_contig1402:5527..56181696845697.0500598-CDS-H-canaliculatus_F_contig1402:5527..5618Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 5528..5618 -
1622929152.865691-CDS-H-canaliculatus_F_contig1402:6202..63431622929152.865691-CDS-H-canaliculatus_F_contig1402:6202..6343Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 6203..6343 -
1696845697.0628276-CDS-H-canaliculatus_F_contig1402:6202..63431696845697.0628276-CDS-H-canaliculatus_F_contig1402:6202..6343Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 6203..6343 -
1622929152.9273338-CDS-H-canaliculatus_F_contig1402:8047..81311622929152.9273338-CDS-H-canaliculatus_F_contig1402:8047..8131Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 8048..8131 -
1696845697.0757592-CDS-H-canaliculatus_F_contig1402:8047..81311696845697.0757592-CDS-H-canaliculatus_F_contig1402:8047..8131Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1402 8048..8131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1402.3195.1

>prot_H-canaliculatus_F_contig1402.3195.1 ID=prot_H-canaliculatus_F_contig1402.3195.1|Name=mRNA_H-canaliculatus_F_contig1402.3195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=228bp
MAHTAAYVLAATAIVSSTTAFAPMGGEPFAPRAAGSGSSACRRGRTPATT
TAVAPLSMAIRAVENFNAEFELEEKTAATLDGYLRHKDMIAEVCKQFDCE
SAEYVGEIFQPVPYSQATPQGMPADIEKKYFLNEQYGIANIPPVVMFNAK
IFKPSRLCAVYKVGGLSENAQEVLRERILRLKENEKRKKEEAELETPWDD
IGSAFTEVHNMPVGSDDDDVDLDSMVV*
back to top

mRNA from alignment at H-canaliculatus_F_contig1402:3511..8131-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1402.3195.1 ID=mRNA_H-canaliculatus_F_contig1402.3195.1|Name=mRNA_H-canaliculatus_F_contig1402.3195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4621bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1402:3511..8131- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACACACAGCAGCTTACGTTCTAGCAGCCACTGCAATCGTGTCCTC
TACGACAGCCTTCGCCCCAATGGGAGGTGAGCCTGTGTTGCACCGCTCCC
GAAACATGCGGGGCATGCGCTGGATATATGTCGGTCGAGGTGCGGTTCAT
GCATGCTCGTGCGACCGTGCTGCCTCCAGTTGTTGCCGCCACTGCGCTGT
ATGTTGTCAGCCAGATAGGTCGAGTTTTTCGTATCCAAATATCTCTGCCT
ACCGGCGTTGGTGAGCATGAGGGAGGCGGCGGCTCCTGTATCACTCCGTC
GGCTTCTCCGTTGAAGCGGATGATGATGAGACGCCCTTCAACGCTCCCTT
TCTCCGAGGGCAGGTCTGGAGGCTGTGGGGCTGTGAAGGCACCATGACGA
GCTGCAGTCCAGCCTGCTTCGTCTCCTTTCCCTGGATGTGGCAGTTGTTG
TCAGAAGCTACTTGGTTGAGAAGGGCTTGAGGTTTACCTGCTGTTCTTCG
ACGTGATGCCCTTGTCTGAAGATGTGCTTGAAACTTTTACAGACTGCTGT
TTACCGTTGTGCCAGGCGGCCGAGAGCAGGAAAGTATAACTCCCAGGCTC
TTTTGGTCAAGTTATGGTCGAAGTACCTGGTAAACGTCGTCGTTCCAGGC
TTCCAGAAGCTGTTCGGCACTGACTTCTGTCTGGCAAATGGATGACAGCA
GCACTGGCTGTAAACATCGAGCAATCATTGGACTGCAATGGTATCGACGG
AGGCAGTAGAACAACGGATCATTGCTATCCGTGCAAACACCAGGAGGAGT
CGATATATTCCCATCGTGTATGTACTTGTATATTTCAGATTTTAGTACTT
GTGGCAGACAGGCAGGGTGGAAAGGGTCAGGGTTACGCTTGGGTCACCCC
CACAGCGAGCTCGTAGGCGAGTTTAAGGAACACCAACGTGGATGTATTGT
AACCTTGACCCCTCGCCGGGCTCGGGCTCCTTCGGAGCATGGCGGGGTAC
TCGGGATTCAGGGTACCCGGGATTCGGCAGACCCCCCAGCAGGTTAGAGT
GCACCGCAACGCCGCAACACAAGCGGAAGTCTTGCACATACTTGAGGCGT
TCGACTCGCTTTTCGTGCTCGTGTTTGGTGAACAGAACCAGAGGGTCTCG
CGTTTTTATGGATGCCTCCCGTGTCTCAGCGATTCGTATCAGTATGGATG
CATGTAGCGGTGAACAGCTGCTGTGACCTGTAGCCGTTTAGTGACAACCG
ATTAGACTACTGACCAGTCAGCCGATGACTGGTCAGTAGTCTAATCGGTT
GCCACTAAGCGGATACAGACCAATGGATGCCCTCATCAATCAAGATAGTT
TAGAGGCTCAAACTTCTTGCACGACGACGAAAGGGGAAAACGTTGAAGAT
ACACAACTTGTGGTGGGCGCCCCCTAGATTCAGGAAGAAGTAGTGCCTAA
GTGTCGGGGGGGAGAGGCTCGAAGTTATTGCATGACAAGGGACAACGTTG
AAGGTGGACGGCTTGTTGCGAGGTGTGACGCTCCAACCCCCCTCACCAGG
ATAATCTGGTCTCATCTGGTAATCTACCAGGCATGCACTACCTCGGTAAC
GAAGAATGGGACGCTGAGACCCAACCCAAAGTTCGCAAGGTTGACATTTC
TCGCGTGCGGGCATCATCTCTTGGGACCCTTGCTTACGCGATGCCGATAC
CTGCCTCCCCTGCCTCGACGCCAACGCCAGACCTGATCATTTGGTGCGTG
TCCCCCCACCTTGCGGAAACCCTTCTCCAGGCGTCAAGTTCGCACCGCGA
GCCGCAGGGTCCGGGTCGAGCGCGTGCCGAAGGGGCCGAACGCCGGCAAC
GACGACCGCTGTCGCACCGCTGTCGATGGCGATCCGGGCTGTAGAGAACT
TCAACGCCGAGTTCGAGCTCGAGGAGAAGGTACGATATGCATGCATGCTG
CTGTCTGCTTTTGCGTGTCGGTGCATTTTTACAAGAAATAATCAACAGCA
CCAAGGGAATACACTCCGCTGAGACAAAGTGATAGCGGCTTCGGAAGATT
TTTTGTTGCATTCCTTACGGTGAGGGTTTAGTATGGGGGGAAAACATTTT
ATGGTGTCAGACGAGAGATTTTAAGCGGTTCATCGTAGACTGAATGGCGG
GCGATACATGTGCATGGAGCATGTTGATACTTCCTGTGATGATGATGAGG
TGCCCAGCGAGCGTTTCTTGAGACCGTCGTTGGTGATCCGCTCGTCTTTT
GGTTGAGGTCGCCCGCTTGTCCTGCCCCGCCGGTGTTGCTGTCAACGGTG
GTGCTGTTGCTGCCCCGAAAGAGCCGTGATACCTGAGCTTCTAAGTCGTG
CATTGCCCTTTCTTCTGAGAGTGTTCTCCTCTCCGACCCGTCCGTCTTGC
AAAAAGAGCAAAGATATTGTCAACAGCAGCAAGGTCAACTTTCCGCGCGC
TATCGCGCCACACACGATCACCCGATACCCCTCAAATTATGCTCTTCCCG
TGGTTTTTATCAGACGGCGGCAACGCTGGACGGTTACCTCCGGCATAAAG
ACATGATCGCAGAAGTGTGCAAGCAGTTCGACTGCGAGTCAGCCGAGTAC
GTAGGTAAGTGTTTCAACCTCCGGGTTTCGAGTGGAAGCACTTGGTTTTC
TGTTTTACTCTCTGCTTCACGGGCTCGGAGGGAATGCGTCCGGACTGCCG
TGTCGACCCCTCGGGTTTCACACTGCCAATGAGGCGTTTTGGTGAAGCTG
GTCGGAAAAGCGCACAAGAGCGGAATATTTTGCTTCGGAGGCCTATGTGA
CGGGCACAAACAAGTAGAGATGTGACGGCAGGAATAGGCCAGGAGCTTGC
TCAGGACCTTTTGCCCCCGATGTTTTGTAGGTTCAGGGGTGGGGTTGTTC
GGTAGTTCGTGCCGCCTTCAAATGATGGAAGGAAAGTTGTCGACGGCACG
GAAGGAATACCCCTTGAGATTTTTTCGTTTGAGCGGGTGTCCCCCAGGCC
ACTACCGGCAGAGTACCGGTATGCAACACGGTGGCTCCTGGAGTTTTGCG
AACTCGGGGGACGAGATAAAGAGTCGCGAGCACCACAGCATATCACCACA
ACCATATCGAAGACGACGACGATGACGGCAAAACGAAAACAGGTGAAATA
TTCCAGCCGGTACCGTACAGCCAAGCCACTCCCCAGGGTATGCCGGCCGA
CATCGAGAAGAAGTACTTCCTCAACGAGCAGGTGTGCTGCTCTCGGAGCG
TGCGTTTGCCTGTCTCTCCGTCGTTGTTGCTGTCGTCGTTGCAACCCTCG
TCGTCGTCGCTATCGGCTTTTTTGTGTTTTGGGGGTGGTGTGGATGCTCG
TCGACACTGTTTTGGCTTGAAAGCGTCGTTGCAGTCGTTCGTAGGGTTTG
GTGTTTCTGGTGTTTTTCGCCGTCGCAGCAGTAGTCGCCGCTACTGCTGC
TGCTGCTGCTGCCGCTGCCATTCGCCAATGTCTTCGCTGAATCGAAACGT
CTGCCTTCCTTCACAGCTGCCTTCACGGTATCCCACGGCACGGTCCTCAA
GCGCGTTGTGCGATCACGTGCTCAGCTTTCGTAGTCTGCTTCCTTCCTTT
TTCCGTCCACAATGTCCGTGCCCGTCCAATCGAACCATGTTTTATCGCTG
TATTTCCGATTCCAGTACGGCATCGCCAACATTCCTCCCGTGGTGATGTT
CAACGCGAAGATCTTCAAGCCCTCTCGCCTGTGTGCGGTGTACAAAGTCG
GGGGGCTGTCGGAGAACGCGCAAGAGGTCTTGCGGGAGCGGATTCTTCGC
CTCAAGTGAGACTCGCGCCAACACGTCGTGCTCGTCTTCGTGTCCGAGGT
CACAAGTACGAAAACATTGAAAACAGAGTTTTCTTCGCATGAGCTTCTGC
GCACGTCGTCTTTCCTTGGACTCGCGGAAAAACTTGTCCCTGGTACATGC
GTTTACTCCTTCCCCGAGATAACTTCAAAGAGTCACGGGGAAGCGGCGGT
GGATAGTTGGCTTGATTTCGATCTTCACGCCCACAACATACTCCTCTCTT
TTCCGAGCCTGGTGTAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCG
TTGTTGTCATGTCTTGCTGGCATTGATAAACATGCATGTTCGTAAAGAGG
CGTGTTGATACACCTGAGCCCCGAACGGACACACTCCGAGCTTGGCTGGC
CTTTAGAAAGAGACGCGGTGCGCCTGGTAACTGCATACCGCGCCGCAGCG
AACAAGATATTTACCCACGCAAAAACAAAAAAGGGAACGCAAAGTTCACA
TCAACCCGTCAGCGGTCGTCGGCGGCAAGAGTAAACATGGCGACGATCCG
GAAGGTGCTGAGAGCGGTGCGGTGTAGAAGAAAGCGACTCACCAGTGTGT
AAAAAATAACCGTGAATATCGACGAGATCTGTACAATTTCAAGCCAATCC
CTTAAAAAATGGAACAAAATCCCGCCCATCAGGGAGAACGAGAAGCGTAA
GAAGGAGGAGGCGGAGTTGGAGACACCGTGGGACGACATCGGCAGCGCCT
TCACGGAGGTCCACAACATGCCCGTCGGATCCGACGACGACGACGTCGAC
CTCGACAGCATGGTCGTTTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1402:3511..8131-

>mRNA_H-canaliculatus_F_contig1402.3195.1 ID=mRNA_H-canaliculatus_F_contig1402.3195.1|Name=mRNA_H-canaliculatus_F_contig1402.3195.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1368bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1402:3511..8131- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACACACAGCAGCTTACGTTCTAGCAGCCACTGCAATCGTGTCCTC
TACGACAGCCTTCGCCCCAATGGGAGGTGAGCCTATGGCACACACAGCAG
CTTACGTTCTAGCAGCCACTGCAATCGTGTCCTCTACGACAGCCTTCGCC
CCAATGGGAGGTGAGCCTTTCGCACCGCGAGCCGCAGGGTCCGGGTCGAG
CGCGTGCCGAAGGGGCCGAACGCCGGCAACGACGACCGCTGTCGCACCGC
TGTCGATGGCGATCCGGGCTGTAGAGAACTTCAACGCCGAGTTCGAGCTC
GAGGAGAAGTTCGCACCGCGAGCCGCAGGGTCCGGGTCGAGCGCGTGCCG
AAGGGGCCGAACGCCGGCAACGACGACCGCTGTCGCACCGCTGTCGATGG
CGATCCGGGCTGTAGAGAACTTCAACGCCGAGTTCGAGCTCGAGGAGAAG
ACGGCGGCAACGCTGGACGGTTACCTCCGGCATAAAGACATGATCGCAGA
AGTGTGCAAGCAGTTCGACTGCGAGTCAGCCGAGTACGTAGACGGCGGCA
ACGCTGGACGGTTACCTCCGGCATAAAGACATGATCGCAGAAGTGTGCAA
GCAGTTCGACTGCGAGTCAGCCGAGTACGTAGGTGAAATATTCCAGCCGG
TACCGTACAGCCAAGCCACTCCCCAGGGTATGCCGGCCGACATCGAGAAG
AAGTACTTCCTCAACGAGCAGGTGAAATATTCCAGCCGGTACCGTACAGC
CAAGCCACTCCCCAGGGTATGCCGGCCGACATCGAGAAGAAGTACTTCCT
CAACGAGCAGTACGGCATCGCCAACATTCCTCCCGTGGTGATGTTCAACG
CGAAGATCTTCAAGCCCTCTCGCCTGTGTGCGGTGTACAAAGTCGGGGGG
CTGTCGGAGAACGCGCAAGAGGTCTTGCGGGAGCGGATTCTTCGCCTCAA
TACGGCATCGCCAACATTCCTCCCGTGGTGATGTTCAACGCGAAGATCTT
CAAGCCCTCTCGCCTGTGTGCGGTGTACAAAGTCGGGGGGCTGTCGGAGA
ACGCGCAAGAGGTCTTGCGGGAGCGGATTCTTCGCCTCAAGGAGAACGAG
AAGCGTAAGAAGGAGGAGGCGGAGTTGGAGACACCGTGGGACGACATCGG
CAGCGCCTTCACGGAGGTCCACAACATGCCCGTCGGATCCGACGACGACG
ACGTCGACCTCGACAGCATGGTCGTTTGAGGAGAACGAGAAGCGTAAGAA
GGAGGAGGCGGAGTTGGAGACACCGTGGGACGACATCGGCAGCGCCTTCA
CGGAGGTCCACAACATGCCCGTCGGATCCGACGACGACGACGTCGACCTC
GACAGCATGGTCGTTTGA
back to top