mRNA_H-canaliculatus_F_contig14019.3194.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14019.3194.1
Unique NamemRNA_H-canaliculatus_F_contig14019.3194.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14019.3194.1 vs. uniprot
Match: D7G479_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G479_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.190e-29
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 2 
Query:   86 MATQVLNSSVGRGRKRKRQVSWAAAELLEEVKLFHMAKPVNPSIPPPAVDDAGEDDAASQPGLALLGLLGVESS 307
            MA ++     GRGRKRKRQVSWAAAELLEEVKLFHMAKPVNPSIPPP VDD GED AASQPGLALLGLLGVESS
Sbjct:    1 MAAKMATPLEGRGRKRKRQVSWAAAELLEEVKLFHMAKPVNPSIPPPVVDDGGED-AASQPGLALLGLLGVESS 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14019.3194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G479_ECTSI9.190e-2985.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14019contigH-canaliculatus_F_contig14019:325..1860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_001620.1
Exons2
Model size555
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14019.3194.1prot_H-canaliculatus_F_contig14019.3194.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14019 325..1775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.7348275-CDS-H-canaliculatus_F_contig14019:324..7021622929152.7348275-CDS-H-canaliculatus_F_contig14019:324..702Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14019 325..702 -
1696845696.9737399-CDS-H-canaliculatus_F_contig14019:324..7021696845696.9737399-CDS-H-canaliculatus_F_contig14019:324..702Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14019 325..702 -
1622929152.7556722-CDS-H-canaliculatus_F_contig14019:1685..17751622929152.7556722-CDS-H-canaliculatus_F_contig14019:1685..1775Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14019 1686..1775 -
1696845696.9836771-CDS-H-canaliculatus_F_contig14019:1685..17751696845696.9836771-CDS-H-canaliculatus_F_contig14019:1685..1775Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14019 1686..1775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.768443-UTR-H-canaliculatus_F_contig14019:1775..18601622929152.768443-UTR-H-canaliculatus_F_contig14019:1775..1860Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14019 1776..1860 -
1696845697.0003374-UTR-H-canaliculatus_F_contig14019:1775..18601696845697.0003374-UTR-H-canaliculatus_F_contig14019:1775..1860Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14019 1776..1860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14019.3194.1

>prot_H-canaliculatus_F_contig14019.3194.1 ID=prot_H-canaliculatus_F_contig14019.3194.1|Name=mRNA_H-canaliculatus_F_contig14019.3194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=156bp
MATQVLNSSVGRGRKRKRQVSWAAAELLEEVKLFHMAKPVNPSIPPPAVD
DAGEDDAASQPGLALLGLLGVESSSSSSPSSTSSPSPSSAVSASTLASST
SSTVASNGKTSSSAAADADAAAAASNGGSLFRSAAVSAPQPGDAQAGGGG
GGAEST
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mRNA from alignment at H-canaliculatus_F_contig14019:325..1860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14019.3194.1 ID=mRNA_H-canaliculatus_F_contig14019.3194.1|Name=mRNA_H-canaliculatus_F_contig14019.3194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14019:325..1860- (Hapterophycus canaliculatus Oshoro5f female)
CGCACCCAACGAAGGGCACAGCAGTGTTCGGTCAATCAGCCGCTAGTTTC
TCCCTGTATACCGCTCAGCGCACGCTGGAGGGACCATGGCGACCCAAGTT
TTAAATTCCTCTGTGGGGAGAGGGAGAAAGCGCAAGCGTCAGGTGTCCTG
GGCCGCTGCGGAGTTGCTCGAAGAGGTGAGCTTTCAAATGAAACTCTAAC
CCTGTGTTTGTCTTCGCAAACGCATTGCCATGATCGGCATGGAACGCAAA
TGCAGCTAGAGAAGTGTGAGTGGTACCCAAGCAGGAATCAAATGTGCATG
CCAGTGCATCAAGCCAAAATATGGCCGTTCCTTCGAGCACCCCGCACCGT
GATACAGTATGTTGTTGGTCAACCCAGAGGAGGGAGGGTATCTGGCATTT
CATCCGTACACCATGGGGCTGACTTTCGTGTTTCCTACTTGTAGCAGGCT
CGAAGGTCAGAGAGCGCGACCAGAGCCCGCGCTGCAAGTCACGAAATATT
AGAGAAAATAGGCCGCAAGTGCACACGTGACCCCACTGTCGAAAGCTTTT
GTTTCGCTGTCGGCCAAAGCATGTGTATGGGTGTTTTCAGACGGGCTGTG
TTCGATTCAGTCGCTGAAATGTTGCCCGTATCAGGATCATGGAATGCAGG
ATTTCAAAACCTATCTCAAATCTCCTCTGCATTCTTCTCCCCTTTACCTT
AGGTGTACCTGTATGTGCGATGGAACGCTCGTCTTTGAAGCACTACCTCA
TGCTGTATATAGGTTGATACACTCTGGCCAATGCTGTTTCCACCCTCGTC
CTTCGATTTCCGTACCTGCGCCGTGCCGCGTATCTCGCTATCCCACTCGT
GCTGTTCACTGCCCCTCCCTTCCCTCCCCTTCCCTTCCACCCTCTCGTGT
CTGAGGACCAAGCAGACCAATACCTGGTATGCTAATGTTCTACCTGGTGT
GTGGTGTACACAACTGCTGCCACAGCACCGCTGTAGATGTCACCGAAAAC
ATCGCTCTTACAGACTGAAGCGTTCCACCACAATAACAAACAAACAGTAT
TTTTAGCGCCAGGTGGCCGGTCTCACGCCGATCCGCGACGAGTCTGAAAA
TCCAACGGCGATGCCCCACTCCGCCGGGAACGCATCTTCGCGCCGCGCCC
AACCGCAGGTCAAGCTCTTCCACATGGCGAAACCCGTTAACCCCTCTATC
CCGCCTCCGGCGGTCGATGACGCCGGGGAAGACGACGCCGCAAGCCAACC
AGGACTCGCGCTGCTCGGTCTCCTCGGCGTTGAATCATCGTCGTCTTCGT
CGCCTTCGTCGACATCATCGCCATCGCCATCATCAGCGGTGTCGGCGTCG
ACGTTGGCATCGTCGACCTCGTCCACGGTCGCCTCCAACGGCAAGACCTC
TAGCTCTGCTGCTGCTGATGCTGATGCTGCTGCCGCTGCATCTAACGGGG
GGAGCCTGTTCCGGTCGGCGGCCGTCTCTGCTCCACAACCTGGCGACGCG
CAAGCTGGGGGCGGGGGCGGGGGAGCGGAGAGCACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14019:325..1860-

>mRNA_H-canaliculatus_F_contig14019.3194.1 ID=mRNA_H-canaliculatus_F_contig14019.3194.1|Name=mRNA_H-canaliculatus_F_contig14019.3194.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=936bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14019:325..1860- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGACCCAAGTTTTAAATTCCTCTGTGGGGAGAGGGAGAAAGCGCAA
GCGTCAGGTGTCCTGGGCCGCTGCGGAGTTGCTCGAAGAGATGGCGACCC
AAGTTTTAAATTCCTCTGTGGGGAGAGGGAGAAAGCGCAAGCGTCAGGTG
TCCTGGGCCGCTGCGGAGTTGCTCGAAGAGGTCAAGCTCTTCCACATGGC
GAAACCCGTTAACCCCTCTATCCCGCCTCCGGCGGTCGATGACGCCGGGG
AAGACGACGCCGCAAGCCAACCAGGACTCGCGCTGCTCGGTCTCCTCGGC
GTTGAATCATCGTCGTCTTCGTCGCCTTCGTCGACATCATCGCCATCGCC
ATCATCAGCGGTGTCGGCGTCGACGTTGGCATCGTCGACCTCGTCCACGG
TCGCCTCCAACGGCAAGACCTCTAGCTCTGCTGCTGCTGATGCTGATGCT
GCTGCCGCTGCATCTAACGGGGGGAGCCTGTTCCGGTCGGCGGCCGTCTC
TGCTCCACAACCTGGCGACGCGCAAGCTGGGGGCGGGGGCGGGGGAGCGG
AGAGCACGGTCAAGCTCTTCCACATGGCGAAACCCGTTAACCCCTCTATC
CCGCCTCCGGCGGTCGATGACGCCGGGGAAGACGACGCCGCAAGCCAACC
AGGACTCGCGCTGCTCGGTCTCCTCGGCGTTGAATCATCGTCGTCTTCGT
CGCCTTCGTCGACATCATCGCCATCGCCATCATCAGCGGTGTCGGCGTCG
ACGTTGGCATCGTCGACCTCGTCCACGGTCGCCTCCAACGGCAAGACCTC
TAGCTCTGCTGCTGCTGATGCTGATGCTGCTGCCGCTGCATCTAACGGGG
GGAGCCTGTTCCGGTCGGCGGCCGTCTCTGCTCCACAACCTGGCGACGCG
CAAGCTGGGGGCGGGGGCGGGGGAGCGGAGAGCACG
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