prot_H-canaliculatus_F_contig14009.3190.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig14009.3190.1
Unique Nameprot_H-canaliculatus_F_contig14009.3190.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length45
Homology
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.160e-20
Identity = 42/45 (93.33%), Postives = 45/45 (100.00%), Query Frame = 0
Query:    1 DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            DGRLVEIRNVWADNLETEMVIIR+LVE+YP+VAMDTEFPGVVARP
Sbjct:   51 DGRLVEIRNVWADNLETEMVIIRELVEDYPYVAMDTEFPGVVARP 95          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.110e-20
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 0
Query:    1 DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            DGRLVEIRNVWADNLETEMVIIR+LV++YP+VAMDTEFPGVVARP
Sbjct:   54 DGRLVEIRNVWADNLETEMVIIRELVQDYPYVAMDTEFPGVVARP 98          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.930e-17
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            DG+LVEIRNVWADNLE EM  IR++VE+YP++AMDTEFPGVVARP
Sbjct:   24 DGKLVEIRNVWADNLEEEMAKIREVVEKYPYIAMDTEFPGVVARP 68          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: A0A1D6HN96_MAIZE (Putative CCR4-associated factor 1 homolog 11 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6HN96_MAIZE)

HSP 1 Score: 75.9 bits (185), Expect = 4.710e-17
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            D   VEIR VWADNLE E  +IRD+V+EYPFVAMDTEFPG+V RP
Sbjct:   18 DDESVEIREVWADNLEEEFALIRDIVDEYPFVAMDTEFPGIVCRP 62          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.900e-15
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0
Query:    1 DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            DG+ +EIRNVW DNLE EM  IR++VE YP+VAMDTEFPGVVARP
Sbjct:   28 DGKYLEIRNVWVDNLEEEMAKIREVVETYPYVAMDTEFPGVVARP 72          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: A0A7S0AZF1_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZF1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.350e-15
Identity = 32/45 (71.11%), Postives = 42/45 (93.33%), Query Frame = 0
Query:    1 DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            +G+ +EIRNVWA+NL+ EM +IR+LVE+YP+VAMDTEFPGVVA+P
Sbjct:   61 NGQTLEIRNVWAENLDEEMAVIRELVEKYPYVAMDTEFPGVVAKP 105          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: A0A804NWV7_MAIZE (Poly(A)-specific ribonuclease n=1 Tax=Zea mays TaxID=4577 RepID=A0A804NWV7_MAIZE)

HSP 1 Score: 75.1 bits (183), Expect = 3.340e-15
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            D   VEIR VWADN+E E  +IRD+V+EYPFVAMDTEFPG+V RP
Sbjct:   18 DDESVEIREVWADNMEEEFALIRDIVDEYPFVAMDTEFPGIVCRP 62          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: A0A804QCI9_MAIZE (Poly(A)-specific ribonuclease n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A804QCI9_MAIZE)

HSP 1 Score: 75.1 bits (183), Expect = 3.680e-15
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    5 VEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            VEIR VWADNLETE  +IRD+V++YP+VAMDTEFPGVV RP
Sbjct:   12 VEIREVWADNLETEFAVIRDIVDDYPYVAMDTEFPGVVCRP 52          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: F0XY53_AURAN (Poly(A)-specific ribonuclease n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY53_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 8.850e-15
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    1 DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            DG++VEI++VWA  L+ EM +IR+LVE YP+VAMDTEFPGVVA+P
Sbjct:   49 DGKMVEIKDVWASTLDAEMAVIRELVESYPYVAMDTEFPGVVAKP 93          
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Match: A0A7S2X247_9CHLO (Poly(A)-specific ribonuclease n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2X247_9CHLO)

HSP 1 Score: 72.0 bits (175), Expect = 1.330e-14
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    2 GRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP 45
            G  + +R VW DNLE EM IIRD ++E+PFVAMDTEFPGVVARP
Sbjct:   48 GETLRVREVWEDNLEEEMKIIRDCIDEFPFVAMDTEFPGVVARP 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14009.3190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIU5_ECTSI1.160e-2093.33Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A6H5JI77_9PHAE4.110e-2091.11Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A836C813_9STRA2.930e-1780.00Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A1D6HN96_MAIZE4.710e-1773.33Putative CCR4-associated factor 1 homolog 11 n=1 T... [more]
A0A835Z498_9STRA1.900e-1575.56Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A7S0AZF1_9STRA2.350e-1571.11Poly(A)-specific ribonuclease n=1 Tax=Minutocellus... [more]
A0A804NWV7_MAIZE3.340e-1571.11Poly(A)-specific ribonuclease n=1 Tax=Zea mays Tax... [more]
A0A804QCI9_MAIZE3.680e-1578.05Poly(A)-specific ribonuclease n=2 Tax=Andropogonea... [more]
F0XY53_AURAN8.850e-1568.89Poly(A)-specific ribonuclease n=1 Tax=Aureococcus ... [more]
A0A7S2X247_9CHLO1.330e-1470.45Poly(A)-specific ribonuclease n=1 Tax=Chloropicon ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..45
e-value: 2.5E-17
score: 64.8
NoneNo IPR availablePANTHERPTHR10797:SF0POP2, ISOFORM Ecoord: 6..45
IPR039637CCR4-NOT transcription complex subunit 7/8/Pop2PANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 6..45
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 5..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14009contigH-canaliculatus_F_contig14009:330..1189 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14009.3190.1mRNA_H-canaliculatus_F_contig14009.3190.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig14009 330..1189 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig14009.3190.1 ID=prot_H-canaliculatus_F_contig14009.3190.1|Name=mRNA_H-canaliculatus_F_contig14009.3190.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=45bp
DGRLVEIRNVWADNLETEMVIIRDLVEEYPFVAMDTEFPGVVARP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR039637CNOT7/CNOT8/Pop2
IPR036397RNaseH_sf