mRNA_H-canaliculatus_F_contig14006.3188.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14006.3188.1
Unique NamemRNA_H-canaliculatus_F_contig14006.3188.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14006.3188.1 vs. uniprot
Match: A0A6H5L4Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.320e-16
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    7 QIAAQLRDFVESDEKELMFADGLSAGERNAAHSLAAKRGLGHESRGDEGKRALFVWKVRQTRVPMSVLE 213
            +IAAQ+R+F +S+++EL+F  GLSA ERNAAHSLAA  GLGHESRGDEG RAL +WK       +S+ E
Sbjct:  756 KIAAQVREFAQSEDRELVFPSGLSARERNAAHSLAAGEGLGHESRGDEGNRALHLWKPESEEEAVSIRE 824
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14006.3188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4Q3_9PHAE2.320e-1660.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14006contigH-canaliculatus_F_contig14006:122..689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size568
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14006.3188.1prot_H-canaliculatus_F_contig14006.3188.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14006 179..355 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929151.729499-UTR-H-canaliculatus_F_contig14006:121..1781622929151.729499-UTR-H-canaliculatus_F_contig14006:121..178Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14006 122..178 +
1696845696.4873424-UTR-H-canaliculatus_F_contig14006:121..1781696845696.4873424-UTR-H-canaliculatus_F_contig14006:121..178Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14006 122..178 +
1622929151.7968407-UTR-H-canaliculatus_F_contig14006:355..6891622929151.7968407-UTR-H-canaliculatus_F_contig14006:355..689Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14006 356..689 +
1696845696.5124602-UTR-H-canaliculatus_F_contig14006:355..6891696845696.5124602-UTR-H-canaliculatus_F_contig14006:355..689Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14006 356..689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929151.7466373-CDS-H-canaliculatus_F_contig14006:178..3551622929151.7466373-CDS-H-canaliculatus_F_contig14006:178..355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14006 179..355 +
1696845696.5020165-CDS-H-canaliculatus_F_contig14006:178..3551696845696.5020165-CDS-H-canaliculatus_F_contig14006:178..355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14006 179..355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14006.3188.1

>prot_H-canaliculatus_F_contig14006.3188.1 ID=prot_H-canaliculatus_F_contig14006.3188.1|Name=mRNA_H-canaliculatus_F_contig14006.3188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=59bp
MFADGLSAGERNAAHSLAAKRGLGHESRGDEGKRALFVWKVRQTRVPMSV
LEHVFRGV*
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mRNA from alignment at H-canaliculatus_F_contig14006:122..689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14006.3188.1 ID=mRNA_H-canaliculatus_F_contig14006.3188.1|Name=mRNA_H-canaliculatus_F_contig14006.3188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=568bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14006:122..689+ (Hapterophycus canaliculatus Oshoro5f female)
ACGTTGCAGATTGCGGCGCAATTGCGGGATTTCGTTGAGAGCGATGAGAA
GGAGCTGATGTTCGCGGACGGGCTTTCGGCCGGGGAAAGGAACGCTGCCC
ACAGTCTCGCTGCCAAGAGGGGTCTAGGCCACGAGAGCAGAGGGGATGAG
GGCAAACGCGCCTTGTTTGTGTGGAAGGTGCGGCAAACGCGTGTCCCCAT
GTCTGTTTTGGAGCACGTGTTTCGGGGCGTTTGAGGATTTCGACGGCCGT
CTTTTGTGAGAAAGAAACGTTTGGTTTCTCAGAGGGTCGGGCTTGTTGGA
GCGCTCCTGAAGCCCTCTCGCCATTATCCGATTCGATCGAGACAGCCTTT
GTCCTTTCGAATTGCTGGATAGTTCCATGAGTTTGGTAATCTCACGACGA
CGGCATTCGCTACGATATAGTGGTCGATGTTGTCTAACGAAGATATGCTT
TTATGGGTGGTGTGACGTGAGGGTTGTCGATTTAAACCATAACATCGGGC
GTAGTACTATGAATGTCCTATTTTCATTTCTTGACGTGATGCTTCATGGC
GTCGCTGTTTCAACAGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14006:122..689+

>mRNA_H-canaliculatus_F_contig14006.3188.1 ID=mRNA_H-canaliculatus_F_contig14006.3188.1|Name=mRNA_H-canaliculatus_F_contig14006.3188.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14006:122..689+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGCGGACGGGCTTTCGGCCGGGGAAAGGAACGCTGCCCACAGTCT
CGCTGCCAAGAGGGGTCTAGGCCACGAGAGCAGAGGGGATGAGGGCAAAC
GCGCCTTGTTTGTGTGGAAGGTGCGGCAAACGCGTGTCCCCATGTCTGTT
TTGGAGCACGTGTTTCGGGGCGTTTGAATGTTCGCGGACGGGCTTTCGGC
CGGGGAAAGGAACGCTGCCCACAGTCTCGCTGCCAAGAGGGGTCTAGGCC
ACGAGAGCAGAGGGGATGAGGGCAAACGCGCCTTGTTTGTGTGGAAGGTG
CGGCAAACGCGTGTCCCCATGTCTGTTTTGGAGCACGTGTTTCGGGGCGT
TTGA
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