prot_H-canaliculatus_F_contig14004.3185.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig14004.3185.1
Unique Nameprot_H-canaliculatus_F_contig14004.3185.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length115
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14004.3185.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.570e-23
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0 
Query:    3 NVSEDVTAAILGNLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 54
            NVSEDVTAAILG+LDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP
Sbjct:   90 NVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 141
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14004.3185.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 7.660e-23
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 
Query:    3 NVSEDVTAAILGNLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 54
            NVSEDVTAAILG+LDA DLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP
Sbjct:  680 NVSEDVTAAILGDLDAHDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP 731
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14004.3185.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM1_ECTSI1.570e-2398.08F-box domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L5A3_9PHAE7.660e-2396.15F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 7..45
e-value: 1.3E-7
score: 31.4
NoneNo IPR availableGENE3D1.20.1280.50coord: 1..81
e-value: 4.0E-9
score: 38.3
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 5..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14004contigH-canaliculatus_F_contig14004:219..563 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14004.3185.1mRNA_H-canaliculatus_F_contig14004.3185.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig14004 219..563 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig14004.3185.1 ID=prot_H-canaliculatus_F_contig14004.3185.1|Name=mRNA_H-canaliculatus_F_contig14004.3185.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
SSNVSEDVTAAILGNLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFL
GHVPTPEGQKTAGDAAAAAAVASAAAAAAAAGAGASSRGTGLGGIFGGLG
GGATLPQYRRHQLQP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom