mRNA_H-canaliculatus_F_contig14.3171.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14.3171.1
Unique NamemRNA_H-canaliculatus_F_contig14.3171.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14.3171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14contigH-canaliculatus_F_contig14:92776..93469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size694
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.0132267-UTR-H-canaliculatus_F_contig14:92775..930881622929145.0132267-UTR-H-canaliculatus_F_contig14:92775..93088Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 92776..93088 +
1696845694.674399-UTR-H-canaliculatus_F_contig14:92775..930881696845694.674399-UTR-H-canaliculatus_F_contig14:92775..93088Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 92776..93088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929145.033728-CDS-H-canaliculatus_F_contig14:93088..934691622929145.033728-CDS-H-canaliculatus_F_contig14:93088..93469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14 93089..93469 +
1696845694.6866395-CDS-H-canaliculatus_F_contig14:93088..934691696845694.6866395-CDS-H-canaliculatus_F_contig14:93088..93469Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14 93089..93469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14.3171.1prot_H-canaliculatus_F_contig14.3171.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14 93089..93469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14.3171.1

>prot_H-canaliculatus_F_contig14.3171.1 ID=prot_H-canaliculatus_F_contig14.3171.1|Name=mRNA_H-canaliculatus_F_contig14.3171.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
MLTVLTRQCYAIILFQFGWDRHYYVNVLLSCYFTWNSTILSSWLILLVVT
RCYDVTLLSWPMHVGTLCCHVMVFRPDQASTGWGNLLSPLSSGCLSMGPG
YRPSALRPNFPCRTAAQRVCPVRRAL*
back to top

mRNA from alignment at H-canaliculatus_F_contig14:92776..93469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14.3171.1 ID=mRNA_H-canaliculatus_F_contig14.3171.1|Name=mRNA_H-canaliculatus_F_contig14.3171.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=694bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14:92776..93469+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTGTTACTGATGTTACCCCCAGTACCAGGAAAAACGTAGGAGATGTTA
TCGGTGTTAGCGCTATCAGGCTGTTTAGACGTAGGATAAATACTACCGAA
CTTGCGGAGGACCTGATGGGCAGTAACATAGAGTTACTGATAGTAGCTCT
TCACCTGCGTTTAACATACTTCCATGTTACCTGCGTAACCGATGCTACCA
CTGTTGACGTAGGACAATGTTAACCTTTTAACGCCAGATGCACCTTGTAA
CATAACACTATAATATTTTACTCGTTGGGGCTATAACGTATAGTATATTC
TTGAAATGATCACATGCTGACAGTATTAACAAGACAATGTTATGCTATTA
TATTGTTCCAGTTCGGGTGGGACAGGCACTATTATGTTAACGTACTGCTG
TCTTGTTATTTCACATGGAACTCTACTATATTATCGTCATGGCTGATATT
ATTAGTAGTGACACGATGTTATGATGTTACGCTTTTGTCATGGCCGATGC
ACGTGGGAACACTATGTTGTCATGTTATGGTGTTTCGGCCAGATCAGGCA
AGTACTGGGTGGGGTAATCTCCTCTCTCCTCTCTCCTCGGGTTGTCTCTC
CATGGGACCCGGATACAGACCATCAGCTTTGCGTCCTAATTTCCCATGCC
GCACTGCTGCGCAACGGGTTTGCCCCGTGCGAAGGGCGCTATGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14:92776..93469+

>mRNA_H-canaliculatus_F_contig14.3171.1 ID=mRNA_H-canaliculatus_F_contig14.3171.1|Name=mRNA_H-canaliculatus_F_contig14.3171.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14:92776..93469+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGACAGTATTAACAAGACAATGTTATGCTATTATATTGTTCCAGTT
CGGGTGGGACAGGCACTATTATGTTAACGTACTGCTGTCTTGTTATTTCA
CATGGAACTCTACTATATTATCGTCATGGCTGATATTATTAGTAGTGACA
CGATGTTATGATGTTACGCTTTTGTCATGGCCGATGCACGTGGGAACACT
ATGTTGTCATGTTATGGTGTTTCGGCCAGATCAGGCAAGTACTGGGTGGG
GTAATCTCCTCTCTCCTCTCTCCTCGGGTTGTCTCTCCATGGGACCCGGA
TACAGACCATCAGCTTTGCGTCCTAATTTCCCATGCCGCACTGCTGCGCA
ACGGGTTTGCCCCGTGCGAAGGGCGCTATGAATGCTGACAGTATTAACAA
GACAATGTTATGCTATTATATTGTTCCAGTTCGGGTGGGACAGGCACTAT
TATGTTAACGTACTGCTGTCTTGTTATTTCACATGGAACTCTACTATATT
ATCGTCATGGCTGATATTATTAGTAGTGACACGATGTTATGATGTTACGC
TTTTGTCATGGCCGATGCACGTGGGAACACTATGTTGTCATGTTATGGTG
TTTCGGCCAGATCAGGCAAGTACTGGGTGGGGTAATCTCCTCTCTCCTCT
CTCCTCGGGTTGTCTCTCCATGGGACCCGGATACAGACCATCAGCTTTGC
GTCCTAATTTCCCATGCCGCACTGCTGCGCAACGGGTTTGCCCCGTGCGA
AGGGCGCTATGA
back to top