mRNA_H-canaliculatus_F_contig14.3168.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14.3168.1
Unique NamemRNA_H-canaliculatus_F_contig14.3168.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14.3168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14contigH-canaliculatus_F_contig14:55087..55634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size548
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14.3168.1prot_H-canaliculatus_F_contig14.3168.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14 55321..55623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.920695-UTR-H-canaliculatus_F_contig14:55086..553201622929144.920695-UTR-H-canaliculatus_F_contig14:55086..55320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 55087..55320 +
1696845694.6410172-UTR-H-canaliculatus_F_contig14:55086..553201696845694.6410172-UTR-H-canaliculatus_F_contig14:55086..55320Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 55087..55320 +
1622929144.959237-UTR-H-canaliculatus_F_contig14:55623..556341622929144.959237-UTR-H-canaliculatus_F_contig14:55623..55634Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 55624..55634 +
1696845694.665651-UTR-H-canaliculatus_F_contig14:55623..556341696845694.665651-UTR-H-canaliculatus_F_contig14:55623..55634Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14 55624..55634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.9397924-CDS-H-canaliculatus_F_contig14:55320..556231622929144.9397924-CDS-H-canaliculatus_F_contig14:55320..55623Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14 55321..55623 +
1696845694.6550279-CDS-H-canaliculatus_F_contig14:55320..556231696845694.6550279-CDS-H-canaliculatus_F_contig14:55320..55623Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14 55321..55623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14.3168.1

>prot_H-canaliculatus_F_contig14.3168.1 ID=prot_H-canaliculatus_F_contig14.3168.1|Name=mRNA_H-canaliculatus_F_contig14.3168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
MPPPQIAHCCLMSTTNLHASNTFPVVFQSVAPPVLAHSRTGTHAPPENTM
DVGTRGAPVIAATCRPPHPLAATATAATPTYRQAGIQNHQHKRRRRRRHF
*
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mRNA from alignment at H-canaliculatus_F_contig14:55087..55634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14.3168.1 ID=mRNA_H-canaliculatus_F_contig14.3168.1|Name=mRNA_H-canaliculatus_F_contig14.3168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=548bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14:55087..55634+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCCGCGGTGTGCCAAAACAGTTGCACAGTTGCTGGACGCTCTGATGT
TCGGGATGGCAGCTACCAAGTTTCTTAGACACCGATCCCATCCTTTTACT
TGTAGCGGTAAACCGCTGGCACTTTTGGCACATGATGATGTTACACGAGG
GGGAACGGAGGCGATGCGATAGCTGCTGCACCATCGTGACACCCAGACCA
GCAATGGCGCGGTGGGTGGTAACCCCGTGGCTAGATGCCCCCACCCCAGA
TCGCACATTGCTGTTTGATGTCGACGACCAATCTCCATGCTTCAAACACT
TTTCCGGTGGTCTTCCAGAGCGTTGCCCCTCCTGTGCTGGCACATAGTCG
CACGGGAACGCACGCACCTCCAGAGAACACAATGGACGTGGGAACCCGGG
GCGCGCCGGTGATAGCGGCAACATGTCGACCACCACACCCTTTAGCAGCG
ACGGCAACAGCAGCAACGCCAACGTACCGCCAAGCCGGCATCCAAAATCA
CCAACATAAACGACGACGACGAAGGCGGCACTTCTGACCTTTCTCTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14:55087..55634+

>mRNA_H-canaliculatus_F_contig14.3168.1 ID=mRNA_H-canaliculatus_F_contig14.3168.1|Name=mRNA_H-canaliculatus_F_contig14.3168.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14:55087..55634+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCCACCCCAGATCGCACATTGCTGTTTGATGTCGACGACCAATCT
CCATGCTTCAAACACTTTTCCGGTGGTCTTCCAGAGCGTTGCCCCTCCTG
TGCTGGCACATAGTCGCACGGGAACGCACGCACCTCCAGAGAACACAATG
GACGTGGGAACCCGGGGCGCGCCGGTGATAGCGGCAACATGTCGACCACC
ACACCCTTTAGCAGCGACGGCAACAGCAGCAACGCCAACGTACCGCCAAG
CCGGCATCCAAAATCACCAACATAAACGACGACGACGAAGGCGGCACTTC
TGAATGCCCCCACCCCAGATCGCACATTGCTGTTTGATGTCGACGACCAA
TCTCCATGCTTCAAACACTTTTCCGGTGGTCTTCCAGAGCGTTGCCCCTC
CTGTGCTGGCACATAGTCGCACGGGAACGCACGCACCTCCAGAGAACACA
ATGGACGTGGGAACCCGGGGCGCGCCGGTGATAGCGGCAACATGTCGACC
ACCACACCCTTTAGCAGCGACGGCAACAGCAGCAACGCCAACGTACCGCC
AAGCCGGCATCCAAAATCACCAACATAAACGACGACGACGAAGGCGGCAC
TTCTGA
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