mRNA_H-canaliculatus_F_contig1399.3158.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1399.3158.1
Unique NamemRNA_H-canaliculatus_F_contig1399.3158.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1399.3158.1 vs. uniprot
Match: D7FYA3_ECTSI (TFIIIC_sub6 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA3_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.530e-42
Identity = 74/95 (77.89%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:  142 VECEEEYDEEDVYVVVDLPSSVDGEALLTASSVTVKGIGTSTPQLKIGEEMYGGKAEPIIGTTMSFTTPKPGSSGREPLVLASFSNTRVTFSQPP 426
            ++ EEEYDEEDVY+VVDLP +VDGEALL+ASSV+VKGIGT TPQLK+GEE+Y G AEPIIGTTM+FTTPKPG+SGREPL LA FSN ++ FSQPP
Sbjct:    1 MDVEEEYDEEDVYIVVDLPPAVDGEALLSASSVSVKGIGTKTPQLKVGEEVYEGNAEPIIGTTMAFTTPKPGASGREPLELACFSNMKMAFSQPP 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1399.3158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYA3_ECTSI1.530e-4277.89TFIIIC_sub6 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1399contigH-canaliculatus_F_contig1399:8634..14068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003220.1
Exons3
Model size1003
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1399.3158.1prot_H-canaliculatus_F_contig1399.3158.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1399 9136..10186 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929143.7880158-UTR-H-canaliculatus_F_contig1399:8633..91351622929143.7880158-UTR-H-canaliculatus_F_contig1399:8633..9135Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1399 8634..9135 -
1696845694.2746196-UTR-H-canaliculatus_F_contig1399:8633..91351696845694.2746196-UTR-H-canaliculatus_F_contig1399:8633..9135Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1399 8634..9135 -
1622929143.8263416-UTR-H-canaliculatus_F_contig1399:10186..102281622929143.8263416-UTR-H-canaliculatus_F_contig1399:10186..10228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1399 10187..10228 -
1696845694.307021-UTR-H-canaliculatus_F_contig1399:10186..102281696845694.307021-UTR-H-canaliculatus_F_contig1399:10186..10228Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1399 10187..10228 -
1622929143.842916-UTR-H-canaliculatus_F_contig1399:13819..140681622929143.842916-UTR-H-canaliculatus_F_contig1399:13819..14068Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1399 13820..14068 -
1696845694.3195326-UTR-H-canaliculatus_F_contig1399:13819..140681696845694.3195326-UTR-H-canaliculatus_F_contig1399:13819..14068Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1399 13820..14068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929143.8030536-CDS-H-canaliculatus_F_contig1399:9135..92721622929143.8030536-CDS-H-canaliculatus_F_contig1399:9135..9272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1399 9136..9272 -
1696845694.2864556-CDS-H-canaliculatus_F_contig1399:9135..92721696845694.2864556-CDS-H-canaliculatus_F_contig1399:9135..9272Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1399 9136..9272 -
1622929143.8128543-CDS-H-canaliculatus_F_contig1399:10113..101861622929143.8128543-CDS-H-canaliculatus_F_contig1399:10113..10186Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1399 10114..10186 -
1696845694.2981703-CDS-H-canaliculatus_F_contig1399:10113..101861696845694.2981703-CDS-H-canaliculatus_F_contig1399:10113..10186Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1399 10114..10186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1399.3158.1

>prot_H-canaliculatus_F_contig1399.3158.1 ID=prot_H-canaliculatus_F_contig1399.3158.1|Name=mRNA_H-canaliculatus_F_contig1399.3158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
MYGGKAEPIIGTTMSFTTPKPGSSGREPLVLASFSNTRVTFSQPPGDHRC
VLSGERDLRKEFDRLSDSA*
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mRNA from alignment at H-canaliculatus_F_contig1399:8634..14068-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1399.3158.1 ID=mRNA_H-canaliculatus_F_contig1399.3158.1|Name=mRNA_H-canaliculatus_F_contig1399.3158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5435bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1399:8634..14068- (Hapterophycus canaliculatus Oshoro5f female)
GAGCAGCAGAAAGGTGGAAACAATCGGAAGCAGCAGCAGCGGCGACATCT
GAAGCAGCAGGGTCAGGAGGAGGGGAGGGAGGAGGAGGAGGAGGAGGAGG
AAGAAGAGGAGGAGGAGGAGGAGGAGGAATTTCCAGCAGGCGTAGAATGC
GAGGAGGAGTACGATGAGGAGGACGTGTACGTGGTGGTCGACCTGCCCTC
GTCTGTGGACGGCGAAGCTCTCCTAACGGCATCATCCGTCACTGTGAAGG
TGATGCACTCTCTCCCTCAGTCTTGTTGTACTCGGAGTACATGGTGATCC
CATGCAAACGCGGTGGAACAGCTTCATTCATGTGAAACCGGGTCCCGGGA
GGGCCAGAATAGAGCGGGCCCAAACGGAGGCTGTTCCTCTACTTTTAGGG
AAGGTGTTGACGAGAAACAGAAAATCTGTTTTGTTTTCCCAAACCGAAAA
GGCCAAACAGTTTTGGGTTTTTCTGCAAGACAGCCAAAGTCCATTTGAAC
GGGTAAACGCGTGAACTCCTTGGCGGCGGTGTAAAATTGAATTTTCCACC
AGCGAGAGGAGGAGCCGTTCGACTTCATAGAATTTTCTGACCTCGCTTGA
CATATTCTGTCATATCTCGGCGAGGAAACAGTCAGGTGCTTTGCTTATAC
TCCCCCAACGAAGCTGAGTCCTGGGGCTTTCCACAATGCCCGAGGTCGTG
GGTCGGGCGGACCGAGGGCATTCCGAGCAGTTGAGGAAAACTGGGAAACA
TTAGGAAGAGACACTCGCCGTGTCATTGCCGCTGAAAGCTCCCAAACAGA
CCTCACGTCGCATTTTGATCCATATCTCAGCGATGAAGGAACGACTTGCC
CTGGCAACGCCACTCCGAGAAAGCTGGTTCGATATCCCGTAGGTGTCGGA
CAAGGGTTGGGAGCGTTGCGGTACTGAGAGCGGCGACATATGTGGCCAAA
GACACCGGAGAAATGAACAAGAGTCGATATCTTCCCTACACAGGGCACTT
TCCAACACCCTTCGACTGACGCTTCAACCAATATCTCATCGAATACAGCA
GCGTCTGCCCTGGCAACGCCACCACAAGCAAGATGCCTAGGCATATGGTC
CGTATGGAATGGCCAACTTCTCGGGTGATGGGAGCCTTAGATGTTCAGGG
GAAACGGGCAAAACTACGCATATCTCACGATGTGTTCGCGTCTCTGCGGC
ACAGGTTCGCCCTTAAGCCTTCCACAGCGGAAACAGATTTTCCGTCTCCC
ACAAATAAAGTCCCTCGGGACTTCTTTTCATCTCTCTATATCGAAAAGGC
CACATCGCTTTTTGGGCGTCGTCGGGCGGTATAGCGGATTGACCTATCAG
AGGCGGAAAAAAAAACAGAAGACAGATATTCCATTTTTCGTTAACACACG
ACCTCAGTATTTTCGTAGTTTCCCGTCACAGGTATTTTCGTTTTTTATTA
TTTTATTTTCCACCTATAGCAACAGTTGCCCGTTGGTCCAATGGTTTTAA
CCTGTCCACTACAGCAGCGGCAAAGTCTAGGGTTCAATCCCGAAGTCTGG
AGTTCAATCCCAGCCAAAAGTGATTATTTGGCGACTTCGTCGGTGAAAGC
GATACGATAGCTGAAACGCTCGTGAGTATCGTGCCAAACTTCGATTGAGC
ACGTCGACGAGGGAAAGACAGTAAGGGAAAGAGATGGCTGCACCCTTCTT
GCGGTACAAGCCAAGGCAAGCATCGCAGGACCGCAGGGGGAAGGTGGGGC
AAAAAAGAAACACTTTCTCTCCCGCTGCTCTTACACCAAGACCTCCTCGT
CCCATCGCACGCGCGTTTGCGTATTTCAGGTGTGTAAAATACGAGTAATT
TCCGTCCACTGCTGTGCGACAATAATGAAGGATTAGTCATGTGAACCAGA
TCAAGGGTTCGACCGATGGATCAATCGGTGGATCACCAAGCTTCTGGGCA
GCGAATTCTCTCACACGGCGAATCATCACAGGAAGTATAAAATTTCTCGT
GGTGTAAACAATGTTGTTCTCTTCCCCATCCCATTCATCTCCTGAATAAA
ACCACCCTTCTGTTTTTGTCCATACCCCATCCCATGTTTTTCACGTTTTT
GTCCACAACTTGCCCACTGACACATAATTTCATCCTTTCACTTGAACGGA
TCCCTTACTGAATGAAATCGATAGTAGCCCCCTGAGATGGACATGTCTTA
GGTGGGTATTCCTTCGGTGTTGCTGACTTGTTTTGTAAATAAGAAACATA
AAAAGAAAAAAAAAGCCCTTGTAGTTCTCTTAAAAAAATACACGGAAAAG
CGTAGACTTTGCATACACCGCAGCGTACGTGTCTTACCTTGAACGGGGGC
ATTGTCGCCAGAACAAATGAAACGAAACACACGCACACACACACACACAT
ACACACACACACCTTCATCGCATCGATCGACGTTGCATCTCACATCTCAT
CCCCCATCCAATAGCTGCAGCGCCGTTTGCTCGTCGGCAATTTCCTTCAG
TCTCTTACGCCGGCAGCCGTGAGGCTGCAGCCCCGGCCTTCCTTCATCCC
GGTAATACGCCTGGTACACTGTTGTTCCAACTAGCACAAGAAGGTTGCCG
AAACTATTACGGCAGTAGTATTGCACCACACCTCAACCATCAGCGCTTGA
GCGAGACACGGAACCTCCAATTTCACAGCCATTTTGCAGGAGGCGAAATA
CACCCCGCGCTGCTGCTGCTGCTGCTGTGTCGCTGTTGTCGATCGTGGCA
CCGCGCAAGCGAGTGCAAGGCAAGCAAAGCAAAGCAACTTCCCTGTTCAA
CATACCTGGTACTCCACAGCAGTGTACGAAAGTCCCGCTGACAGACCCTT
TATGCACCAGGCAGCAGCAGAGCTCGGACAACTTGTCATTGGGAATATCG
CCTAGAATAAAGTGCTGACATTCTACCAGTACCACCAATTCTCTTCTTTA
TGGCGCTATCCTGTTTTTGAGGACAAATGGCGGCCGTTGCAGGGGCAGTA
GCAGCTGCTGGGAGAGCTCCAGACTCTTATCTTGCGCGCGTTGCCGCTCG
GCACACAGGGCGTACCCTACGTGAACTACCGCATACAGATGTGCCGGCAT
TTGCGTTGGGCGAGTCGAAGGTTTGGCTCTGCGAAGGTAGAACAAATCGC
TCCTGAACAGATTTACCGTATCGCCATCGAAGGCGATGATGCTTTTCTGG
TAGCCTCCGGGTTTGAAGAAGTCACCCTGTCGCGATTAGACCGTGAAGAG
AAGCAAAGCGCAAGACAGCGCGGACGGAGATACAGAGTGTTCGCACTGCC
ACCAGCGGGAACGTGAAGACGTCGGCAAGCCTTTGAAGCGGCCAACCAGT
GGTGTCAAACTTGAGTTTGTGTTTCGGACGTGGACGCCTGATCGGAGAGG
CGGGCTCCACCTCTTTCCAAGCGTTTCTGGTAATTTTTCGTTGGCTTGTA
CTTCGAAGTAAGAAATCTCGATCGGCGAGATGTTTCCCTCTTCCTGTCAA
CTTGCTGCTTTTCTCATGTCTTCCTTTCCAGGTGTGGACATGCAAAAACA
AAATTGGTGTTCGTGCCCGAGCCTGATTCCTTATTCGTCTTGCCTGGCTT
CGAGCTGCTACTTCACGCAATCAGAAGCGTTTGTGTGCGGGATTAGTAGC
CGAGCACCGCTGGTCGTGCTCAAGCCATTCTGCCTGGAAGCAAACCATCC
CCGACGTCCTGCGTTGCTTCCAAATTTCTCACGGGCTGCGCTCTCTGGAC
TGTGACGATCCTGGTTCTGTTATTATCCGCGTACAACGTATAAAGTGTGA
AGCACTCAATCACCCCCCCCCCCGACACACACACACTCAGGGCATAGGGA
CGAGTACCCCGCAGCTCAAGATCGGCGAGGAGATGTACGGTGGCAAAGCT
GAACCCATCATCGGCACTACCATGTCCTTCACCACCCCGAAACCTGGGTC
GTCAGGTGTGTGCGTCTGCGCTCCTCTCTGACTGGCTCTGCAGTTTTTTT
GCCCTCGAGTTCTGCGAGCGGATCCGTGGCGGTTTTGCTTTCAGCGTGCG
CAGCACAATATGCTGTATCGATCTGTGCCCTGTCGCCCCGTCAGAGCGTA
GGATTGTTTTCGCGTAGAAAGGAACAAAGCGGCTTTTCTTGCTGCTGCTG
CTGCTGCTGCTGCTGCTACTGCCGTTGTCGATGTCGATGTCGATGTTGCT
GCTAGCACTGCTCGCCACATTGGCGCATCGCTGAAAGGCAGATGCTCGGT
GACGAGCCAGGCACATTAAAAAGCCCGCCGGAAGGACAACGAAGGCCCCG
CAGGACCGTTGTATGTGGCACGTGGTCGAAATTTGTTGGGGTCAAACCCA
GCGTTGGAGATCGTGGATCAGGTGGCCAAGCCTTTCGTCGACGAATCGCG
CATTCTGGCTAATTGTCATCGAGAATTTGAGTCAGGACTTTCGATCCTCT
TTCGGGGCTGGTATTTCTGAGGAACCCCCTTGCCCATGTGTTTTCACGTA
TTCGTTGGTTTATTGCTGAAACGGCTTGTCTAGTAGTACCAGTGTTTCCA
CTGCTGCTACTCGCGCAGGGAAGAGAAATTGAAGCGAACAATTATCTGCT
GACGACAAATCCTCTGCACACCCTATAGGCCATGCCCTGTGCCGTGTACT
GGAGCAGCAGCTATGATCTTCTTGTTGCCTTTGACTCGAACTTATTCGCA
TGAAGAGCCCCTACAGCATTATGTTTCAAATGCTATTCTGCCGTTCAACG
GTGCCTATGAATGCCATCAATGTTTTCTCGTTTCGGCATACCACAGGCCG
GGAGCCTTTGGTACTGGCATCTTTCAGCAACACGCGAGTGACCTTCAGCC
AACCGCCAGGTGACCATCGCTGTGTTTTATCTGGCGAGCGGGATCTGCGA
AAAGAATTCGACCGGCTTTCAGATAGCGCATGATCCGCCGCTCTGGTTTT
GTTTCATCGGAGGAGAGGCAGGTTGACCTCACGCCTTACGCTCCACGCCC
TGCCTCTCTCGGCCTAGTTCATCAGGTGGAGGGCTCTCATGGTTGTTTCT
AAGATCCGACGACAAAAGAGTGTTGTTTTAAGGCGTTTTACATCTATTTT
CGCAGATTTAATAGTTTTTCTCTGTCTCTCGACCCTAGCTATGCAGCTCT
TGTGGAAACGAAGCCTTGAGTATTCAACTGACGAGGCGGGCCGGTCGAAA
CGACTCGTTCTTCGCAGCTGAAACCACCCAGGTGATGGCTCTGGAGTTAG
TCCTGGCGAGAGTCCGAGGGGAACGATCCTGACGGGAAAAGGAAGGGGAA
AAACATGTGCAGTGCAGTGCTGGGGTCCGGTGTTGCTCCCCGCAGGAGAT
GTTGTGCGTCGTGGAACTTTTGTACTTACATCCTTGGCGCCCCGCCCCCC
GCTCCATGCCCACTTGCCCACCTGCCCACCTGCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1399:8634..14068-

>mRNA_H-canaliculatus_F_contig1399.3158.1 ID=mRNA_H-canaliculatus_F_contig1399.3158.1|Name=mRNA_H-canaliculatus_F_contig1399.3158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1399:8634..14068- (Hapterophycus canaliculatus Oshoro5f female)
ATGTACGGTGGCAAAGCTGAACCCATCATCGGCACTACCATGTCCTTCAC
CACCCCGAAACCTGGGTCGTCAGATGTACGGTGGCAAAGCTGAACCCATC
ATCGGCACTACCATGTCCTTCACCACCCCGAAACCTGGGTCGTCAGGCCG
GGAGCCTTTGGTACTGGCATCTTTCAGCAACACGCGAGTGACCTTCAGCC
AACCGCCAGGTGACCATCGCTGTGTTTTATCTGGCGAGCGGGATCTGCGA
AAAGAATTCGACCGGCTTTCAGATAGCGCATGAGCCGGGAGCCTTTGGTA
CTGGCATCTTTCAGCAACACGCGAGTGACCTTCAGCCAACCGCCAGGTGA
CCATCGCTGTGTTTTATCTGGCGAGCGGGATCTGCGAAAAGAATTCGACC
GGCTTTCAGATAGCGCATGA
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