prot_H-canaliculatus_F_contig1399.3157.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1399.3157.1
Unique Nameprot_H-canaliculatus_F_contig1399.3157.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length778
Homology
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: A0A6H5K9D0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 2.600e-118
Identity = 272/509 (53.44%), Postives = 296/509 (58.15%), Query Frame = 0
Query:   16 MAPRQVIPYDEGGG-RTSRQLLFETQQQXRQR---------HQQQ-WADPAAVENELPSCFAPP----GIGRREDFEHQEQPHSSDLRDALGDEDDEDDDGGESVELGAPTSWVSRDLVPKPPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQEKMPGLRKVEPIPDREDPFKIRTFCFLEFASHAEAAAIFNRHQTSPRPALQRASSVPPXXXXXXXXDPGATSLELQASPPSRVSGAGVDGVDVFLERD-NRDGSTSTGDTSGGEFFASGARAPAPSSPDHDGGDSAGGLLHFEASGLSSVWGQRRLGAEVEDRVACGAGGGGLRLSEDGFPSWSDAPAAAHTAXXXXXXXXATPEESGYLSAAXXXXXXXXXXDDGVGANTARGVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPEFGMLDGRPSSRG 508
            MAPRQV PYDE G  RT RQLL E+Q  X            HQ++ W D   ++N  PS F P     G    E    Q QPHSSDLRDAL D+        ES++LG  T+W SR+ VPKP GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSE+AN AI+TMHRFEFKHGRFLGVLPSDENRTLFVGGL+EEWSCAYICQLL+EKMPGLRKVEPIPDRED FKIRTFCFLEFASHAEAA IFNRHQTSPR  L +      XXXXXXXX  G T+                    +  ERD  R+  +ST  TS G+  A                                                    GGG +                                                  DG GA    GVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPE G+ +GRP+SRG
Sbjct:    1 MAPRQVFPYDECGVLRTPRQLLAESQXXXXXXXXXXXXXXXHQREPWLD---LDN--PSPFTPTFDESGSSGGEAGCVQ-QPHSSDLRDALKDDXXX---XXESLDLG--TAWASREFVPKP-GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMPGLRKVEPIPDREDRFKIRTFCFLEFASHAEAAVIFNRHQTSPR--LPQPXXXXXXXXXXXXXXQGPTTELSLPLXXXXXXXXXXXXAGLRYERDARRESRSSTTCTSAGDNAAD---------------------------------------------------GGGEK--------------------------------------------------DGTGA----GVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPESGVQNGRPASRG 390          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: D7FYA2_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 1.160e-82
Identity = 163/233 (69.96%), Postives = 174/233 (74.68%), Query Frame = 0
Query:   16 MAPRQVIPYDEGGG-RTSRQLLFETQQQXR--------QRHQQ--QWADPAAVENELPSCFAPP----GIGRREDFEHQEQPHSSDLRDALGDEDDEDDDGGESVELGAPTSWVSRDLVPKPPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQEKMPGL 233
            MAPRQV PY E G  RT RQLL E+QQQ R        ++H+Q  QWAD      + PS F P     G    E    Q QPH SDLRDAL D D       ES++LGA   W SR+ VPKP GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSE+ANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGL+EEWSCAYICQLL+EKM  L
Sbjct:    1 MAPRQVFPYHECGVLRTPRQLLAESQQQQRKELESXXXEQHRQGEQWAD-----IDKPSPFTPTFDESGSSGGEAACVQ-QPHCSDLRDALND-DXXXXXXXESLDLGA--VWASREFVPKP-GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKMVRL 223          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: A0A836CJD8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.120e-38
Identity = 85/190 (44.74%), Postives = 113/190 (59.47%), Query Frame = 0
Query:  122 PPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQEKMPGLRK--------------------------VEPIPDREDPFKIRTFCFLEFASHAEAAAIFNRHQTSPRPALQRASSVPP 285
            PPGVEIFVGGLTR++  +ML DWF H GE+TEVR+ARDKRRRRCRGYG+VRF  SE+AN AI+ M  ++FK G +LG+LPSDENRTL+V G+ + WS   +         G+++                          ++ + DRE P ++R FCF+EF +H  A +   R+     P   R SS  P
Sbjct:  231 PPGVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSANFEGVKRQVELCAARDAAARRAPLCWRRVASIRMQLVWDRETPSRLRPFCFVEFDTHEHATSAHARYH----PDSDRGSSDSP 416          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: A0A836CKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA)

HSP 1 Score: 163 bits (412), Expect = 8.540e-38
Identity = 84/180 (46.67%), Postives = 113/180 (62.78%), Query Frame = 0
Query:  116 RDLVPKP----PGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLG-------------------VLPSDENRTLFVGGLREEWSCAYICQLLQEKMPGLRKVEPIPDREDPFKIRTFCFLEFASHAEAAAIFNRHQTS 272
            R + P P    PGVEIFVGGLTRS+ R++L D F H G++TEVRIARDKRRRRCRGYG+VRF TSE+AN A+++M  F+FK G +L                    VLPSDENRTL+  G+ E+ S   +C  L     G++++  +  +ED  K+R FCF+EF ++ +AA     H+ S
Sbjct:  142 RSMSPPPGQPCPGVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFLTRSFEGIKRIHLMWGKEDVCKLRPFCFIEFHTNEQAAVALLSHRQS 321          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: D8RBK0_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RBK0_SELML)

HSP 1 Score: 105 bits (263), Expect = 2.580e-20
Identity = 64/192 (33.33%), Postives = 106/192 (55.21%), Query Frame = 0
Query:   70 IGRREDFEHQEQPHSSDLRDALGDEDDEDDDGGESVELGAPTSWVSRDLVPKPP-GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQEKMPGLRKVEPIPDREDPFKIRTFCFLEFASHA 260
            +   ED   +++ +++D  + L + ++   D GESV++       ++ L+ +PP G E+F+GG+TR T  D LR+     GE+ EVRI +DK     +GY +V +   E A +AI+T+   E K GR L    S     LF+G + + W    + ++L E+ PG+  VE + D  +P K R F F+E+ +HA
Sbjct:   48 LDMNEDEGGEDEAYTTDHENGLQNGENASADLGESVDVDDDEE--TKSLLSRPPHGSEVFIGGVTRDTNEDDLRELCSPCGEIFEVRILKDKETGNNKGYAFVTYTNRETAEKAIETLANSELK-GRKLRFSHSQAKHRLFIGNIPKSWDTPELEKILAEEGPGVEGVELLKDPRNPGKNRGFAFVEYYNHA 236          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: UPI001CC6ABC6 (heterogeneous nuclear ribonucleoprotein Q-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC6ABC6)

HSP 1 Score: 101 bits (252), Expect = 6.590e-19
Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = 0
Query:  124 GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQEKMPGLRKVEPIPDREDPFKIRTFCFLEFASHA 260
            G EIF+GGL R    D LRD  +  G ++E+R+ +DK R   +GY +V F + + A +AI+ +H  EFK GR L    S     LF+G + + WS A + ++++E  PG+  +E + D ++P + R F F+E+ ++A
Sbjct:  104 GSEIFIGGLPREVTEDDLRDLCEPIGNISEIRLMKDKDRGESKGYAFVTFNSKDLAKKAIEELHNKEFK-GRTLRCSLSQTKHRLFIGNIPKSWSEAELRKVIEENGPGVENIELLKDPQNPSRNRGFAFIEYYNNA 239          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: A9STT2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9STT2_PHYPA)

HSP 1 Score: 96.3 bits (238), Expect = 3.040e-18
Identity = 57/149 (38.26%), Postives = 83/149 (55.70%), Query Frame = 0
Query:  125 VEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQEKMPGLRKVEPIPDREDPFKI---RTFCFLEFASHAEAAAIFNRHQ 270
            +E+FVGGL + T  + L   F   G+V EVR+ ++ +  + +GY ++RFA++  A RA   + R E + GR  GVLPS+EN TLF+G + + W    + + L  K   +  VE I   EDP      R F F+EF +H EA   F R Q
Sbjct:   18 LEVFVGGLDKETTEEELESVFGRVGDVVEVRLMKNAQTGKNKGYAFIRFASAAIAKRASHDLERVEIR-GRSCGVLPSEENDTLFLGNISKLWKKETVLETL--KKFAIENVEDITLMEDPQLEGVNRGFAFIEFNTHKEALNAFRRLQ 163          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: A0A7C9F016_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F016_OPUST)

HSP 1 Score: 100 bits (248), Expect = 5.480e-18
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 0
Query:  126 EIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQE-KMPGLRKVEPIPDREDPFKIRTFCFLEFASHAEAAAIFNRHQ 270
            EIFVGGL R    D L+  F+  GEV EVR+ +D    + RG+ +VRFAT ++A RA+  M     + G+  G  P+++N TLFVG +   W+   I Q L++  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  335 EIFVGGLDREVVEDDLKKAFEKVGEVVEVRLLKDPLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFVGNICNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 479          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: A0A803NC05_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NC05_CHEQI)

HSP 1 Score: 100 bits (249), Expect = 5.500e-18
Identity = 74/223 (33.18%), Postives = 110/223 (49.33%), Query Frame = 0
Query:   53 DPAAVENELPSCFAPPGIGRREDFEHQEQPHSSDLRDALGDEDDEDDDGGE----SVELGAPTSWVSRDLVPKPPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQE-KMPGLRKVEPIPDREDPFKIRTFCFLEFASHAEAAAIFNRHQ 270
            D  A E++     A  GI    D E   +P   DL+     EDDE + G E     VE     +      V K   +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT ++A RA+  M     + G+  G  P+++N TLF+G +   W+   I Q L++  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  481 DEQAAESKQDEACATGGIEEYGDEEGFVEPGDEDLQ-----EDDEPETGDEMKALEVEHKELAAAAKERKVKKE--LEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 695          
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Match: A0A803NB38_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB38_CHEQI)

HSP 1 Score: 98.2 bits (243), Expect = 1.270e-17
Identity = 53/147 (36.05%), Postives = 83/147 (56.46%), Query Frame = 0
Query:  125 VEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREEWSCAYICQLLQE-KMPGLRKVEPIPDREDPFKIRTFCFLEFASHAEAAAIFNRHQ 270
            +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT ++A RA+  M     + G+  G  P+++N TLF+G +   W+   I Q L++  + G+  +  + D       R FCF++FA HA+A   + R Q
Sbjct:  253 LEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKDYSVEGVENITLVQDPRHEGLSRGFCFIQFACHADAMFAYKRLQ 398          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1399.3157.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9D0_9PHAE2.600e-11853.44RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYA2_ECTSI1.160e-8269.96RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CJD8_9STRA4.120e-3844.74RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CKV5_9STRA8.540e-3846.67RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
D8RBK0_SELML2.580e-2033.33Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
UPI001CC6ABC66.590e-1936.50heterogeneous nuclear ribonucleoprotein Q-like n=1... [more]
A9STT2_PHYPA3.040e-1838.26Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A7C9F016_OPUST5.480e-1837.67Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A803NC05_CHEQI5.500e-1833.18Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]
A0A803NB38_CHEQI1.270e-1736.05Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 207..278
e-value: 0.98
score: 6.6
coord: 126..200
e-value: 3.5E-20
score: 83.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 127..192
e-value: 1.6E-17
score: 63.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 125..204
score: 16.739
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 205..279
e-value: 1.5E-8
score: 36.6
NoneNo IPR availablePANTHERPTHR21245FAMILY NOT NAMEDcoord: 89..270
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 122..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1399contigH-canaliculatus_F_contig1399:2603..5907 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1399.3157.1mRNA_H-canaliculatus_F_contig1399.3157.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1399 2601..5907 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1399.3157.1 ID=prot_H-canaliculatus_F_contig1399.3157.1|Name=mRNA_H-canaliculatus_F_contig1399.3157.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=778bp
HQSADGEGTTRQCFAMAPRQVIPYDEGGGRTSRQLLFETQQQQRQRHQQQ
WADPAAVENELPSCFAPPGIGRREDFEHQEQPHSSDLRDALGDEDDEDDD
GGESVELGAPTSWVSRDLVPKPPGVEIFVGGLTRSTRRDMLRDWFQHAGE
VTEVRIARDKRRRRCRGYGYVRFATSEEANRAIDTMHRFEFKHGRFLGVL
PSDENRTLFVGGLREEWSCAYICQLLQEKMPGLRKVEPIPDREDPFKIRT
FCFLEFASHAEAAAIFNRHQTSPRPALQRASSVPPQQAPPPPPDPGATSL
ELQASPPSRVSGAGVDGVDVFLERDNRDGSTSTGDTSGGEFFASGARAPA
PSSPDHDGGDSAGGLLHFEASGLSSVWGQRRLGAEVEDRVACGAGGGGLR
LSEDGFPSWSDAPAAAHTATATATATAATPEESGYLSAAGGGGGTGGGND
DGVGANTARGVPLVVGGATLKVDWADPLRYHIHLNGGIKGPSAPPEFGML
DGRPSSRGGGGGGGGSGGCGRNVSGNGGCGRPGSGDGGGGRVARCGGAFG
VGRSWQQQQQQQQQQHHQHQHQQEQHQGLTRHPSGPPPQQPPSLSSRWQD
VEHAVHAVQHQHQLHRLHQQRHQQHQQRQCMDTCTACSRGASPVTTRDRG
YTIADVTTGPRGAPFGDEGGDRQRAASSSSSSGGMPPPSRHRHRHRHRPD
EYHQHQHASLHHHHGLLEFTAPRLEVAADREDSGDDGRCLAMPSSWESSE
GRFPPPPPHREAAVAGPASSFRPHQQHP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom