mRNA_H-canaliculatus_F_contig13974.3150.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13974.3150.1
Unique NamemRNA_H-canaliculatus_F_contig13974.3150.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13974.3150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13974contigH-canaliculatus_F_contig13974:678..1130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size437
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.6202853-CDS-H-canaliculatus_F_contig13974:677..9091622929142.6202853-CDS-H-canaliculatus_F_contig13974:677..909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13974 678..909 -
1696845693.7259252-CDS-H-canaliculatus_F_contig13974:677..9091696845693.7259252-CDS-H-canaliculatus_F_contig13974:677..909Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13974 678..909 -
1622929142.6348865-CDS-H-canaliculatus_F_contig13974:927..11301622929142.6348865-CDS-H-canaliculatus_F_contig13974:927..1130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13974 928..1130 -
1696845693.738114-CDS-H-canaliculatus_F_contig13974:927..11301696845693.738114-CDS-H-canaliculatus_F_contig13974:927..1130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13974 928..1130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13974.3150.1prot_H-canaliculatus_F_contig13974.3150.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13974 678..1130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13974.3150.1

>prot_H-canaliculatus_F_contig13974.3150.1 ID=prot_H-canaliculatus_F_contig13974.3150.1|Name=mRNA_H-canaliculatus_F_contig13974.3150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=145bp
APRTSCRGYARMHVCAYARMHAQERGKATTGSTRRGSDLAYRIKRSSHGA
CVCLLFSDVSCSAMSLVHNATSAGALRAPTALKAVGVYWPISWMTVLLVL
KYGQKHRQTERQSGALSKSRAQPVAHRGRTGVTSMCVDLTASGFP
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mRNA from alignment at H-canaliculatus_F_contig13974:678..1130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13974.3150.1 ID=mRNA_H-canaliculatus_F_contig13974.3150.1|Name=mRNA_H-canaliculatus_F_contig13974.3150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=453bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13974:678..1130- (Hapterophycus canaliculatus Oshoro5f female)
GCCCCTCGGACATCGTGTCGAGGGTATGCACGTATGCACGTATGCGCGTA
TGCACGTATGCACGCACAAGAAAGAGGAAAGGCGACAACCGGCAGTACGC
GGAGGGGGTCTGATCTTGCCTACCGTATCAAGCGATCGTCCCATGGCGCA
TGCGTTTGTCTCTTGTTCAGCGATGTCTCTTGTTCAGCGATGTCTCTTGT
TCAGCGATGTCTCTTGTTCAGCAATGCCACGAGTGCAGGAGCACTAAGAG
CACCAACCGCACTAAAAGCTGTAGGGGTCTACTGGCCGATCTCTTGGATG
ACCGTCCTTCTGGTCCTCAAATACGGACAAAAACACAGGCAGACAGAGAG
ACAGTCCGGCGCGTTGTCGAAATCGCGCGCTCAGCCTGTTGCACACCGAG
GTCGTACTGGCGTCACTAGTATGTGTGTGGACTTGACCGCGTCGGGTTTT
CCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13974:678..1130-

>mRNA_H-canaliculatus_F_contig13974.3150.1 ID=mRNA_H-canaliculatus_F_contig13974.3150.1|Name=mRNA_H-canaliculatus_F_contig13974.3150.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=870bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13974:678..1130- (Hapterophycus canaliculatus Oshoro5f female)
GCCCCTCGGACATCGTGTCGAGGGTATGCACGTATGCACGTATGCGCGTA
TGCACGTATGCACGCACAAGAAAGAGGAAAGGCGACAACCGGCAGTACGC
GGAGGGGGTCTGATCTTGCCTACCGTATCAAGCGATCGTCCCATGGCGCA
TGCGTTTGTCTCTTGTTCAGCGATGTCTCTTGTTCAGCGATGTCTCTTGT
TCAGCCCCTCGGACATCGTGTCGAGGGTATGCACGTATGCACGTATGCGC
GTATGCACGTATGCACGCACAAGAAAGAGGAAAGGCGACAACCGGCAGTA
CGCGGAGGGGGTCTGATCTTGCCTACCGTATCAAGCGATCGTCCCATGGC
GCATGCGTTTGTCTCTTGTTCAGCGATGTCTCTTGTTCAGCGATGTCTCT
TGTTCACAATGCCACGAGTGCAGGAGCACTAAGAGCACCAACCGCACTAA
AAGCTGTAGGGGTCTACTGGCCGATCTCTTGGATGACCGTCCTTCTGGTC
CTCAAATACGGACAAAAACACAGGCAGACAGAGAGACAGTCCGGCGCGTT
GTCGAAATCGCGCGCTCAGCCTGTTGCACACCGAGGTCGTACTGGCGTCA
CTAGTATGTGTGTGGACTTGACCGCGTCGGGTTTTCCTCAATGCCACGAG
TGCAGGAGCACTAAGAGCACCAACCGCACTAAAAGCTGTAGGGGTCTACT
GGCCGATCTCTTGGATGACCGTCCTTCTGGTCCTCAAATACGGACAAAAA
CACAGGCAGACAGAGAGACAGTCCGGCGCGTTGTCGAAATCGCGCGCTCA
GCCTGTTGCACACCGAGGTCGTACTGGCGTCACTAGTATGTGTGTGGACT
TGACCGCGTCGGGTTTTCCT
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