mRNA_H-canaliculatus_F_contig13971.3149.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13971.3149.1
Unique NamemRNA_H-canaliculatus_F_contig13971.3149.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13971.3149.1 vs. uniprot
Match: D7G759_ECTSI (Weakly similar Glutamic acid-rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G759_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 6.680e-5
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:    2 FLVNAEELLDMYGVEVPDLSLPPAHKFDASTSESPVDIASTIHK 133
            FL++AEELL +YG+ VPDLSLP AH FD  ++++  D  S + +
Sbjct:  510 FLLDAEELLGIYGLHVPDLSLPAAHGFDTPSTQTSTDSNSAVEE 553
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13971.3149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G759_ECTSI6.680e-550.00Weakly similar Glutamic acid-rich protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13971contigH-canaliculatus_F_contig13971:821..1329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.518617-CDS-H-canaliculatus_F_contig13971:821..9081622929142.518617-CDS-H-canaliculatus_F_contig13971:821..908Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13971 822..908 -
1696845693.698026-CDS-H-canaliculatus_F_contig13971:821..9081696845693.698026-CDS-H-canaliculatus_F_contig13971:821..908Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13971 822..908 -
1622929142.5340803-CDS-H-canaliculatus_F_contig13971:1242..13291622929142.5340803-CDS-H-canaliculatus_F_contig13971:1242..1329Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13971 1243..1329 -
1696845693.7069128-CDS-H-canaliculatus_F_contig13971:1242..13291696845693.7069128-CDS-H-canaliculatus_F_contig13971:1242..1329Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13971 1243..1329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13971.3149.1prot_H-canaliculatus_F_contig13971.3149.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13971 822..1329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13971.3149.1

>prot_H-canaliculatus_F_contig13971.3149.1 ID=prot_H-canaliculatus_F_contig13971.3149.1|Name=mRNA_H-canaliculatus_F_contig13971.3149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
FPRERGRAAGHVRRGSSRLELAARTQVRRLYLRIAGGHRQHDPQEQQQQQ
QPQRRRQA
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mRNA from alignment at H-canaliculatus_F_contig13971:821..1329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13971.3149.1 ID=mRNA_H-canaliculatus_F_contig13971.3149.1|Name=mRNA_H-canaliculatus_F_contig13971.3149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=509bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13971:821..1329- (Hapterophycus canaliculatus Oshoro5f female)
TTTCCTCGTGAACGCGGAAGAGCTGCTGGACATGTACGGCGTGGAAGTTC
CAGACTTGAGCTTGCCGCCCGCACACAAGTTCGACGCGTGAGTCCGCTCG
TCCGGCCAGCAGAAGCTCGTCCGAGTTCTGTGGTGGGAGCACCTTGCTCG
AAACCGTTGCGGCTGCGGGAGGACGGGTGACGGAACACGCGTGTGTCTTT
TGTCAGGGTATCCACCCCGAGCGTTTTTTTTGTTGTACAGTAAAGATATA
TATCTTTTTGCGGGGGCAGGGGTCCTGTTTGTTCGTTGCCACCTCTGAGG
ATGTTTCGCCAGCGTGTCCGAGCCGAGCGGTTGCCGCAGTCTCTGCTGAA
CTTTTCTTTCGGGACATCTCCCCCCCCCCTTTGTCTCTTGTCTGTCTCTC
TGTCGCCCCCACCACATCCAGCTCTACCTCCGAATCGCCGGTGGACATCG
CCAGCACGATCCACAAGAGCAGCAGCAGCAGCAGCAGCCACAGCGGCGAC
GGCAAGCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13971:821..1329-

>mRNA_H-canaliculatus_F_contig13971.3149.1 ID=mRNA_H-canaliculatus_F_contig13971.3149.1|Name=mRNA_H-canaliculatus_F_contig13971.3149.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13971:821..1329- (Hapterophycus canaliculatus Oshoro5f female)
TTTCCTCGTGAACGCGGAAGAGCTGCTGGACATGTACGGCGTGGAAGTTC
CAGACTTGAGCTTGCCGCCCGCACACAAGTTCGACGCTTTCCTCGTGAAC
GCGGAAGAGCTGCTGGACATGTACGGCGTGGAAGTTCCAGACTTGAGCTT
GCCGCCCGCACACAAGTTCGACGCCTCTACCTCCGAATCGCCGGTGGACA
TCGCCAGCACGATCCACAAGAGCAGCAGCAGCAGCAGCAGCCACAGCGGC
GACGGCAAGCACTCTACCTCCGAATCGCCGGTGGACATCGCCAGCACGAT
CCACAAGAGCAGCAGCAGCAGCAGCAGCCACAGCGGCGACGGCAAGCA
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