mRNA_H-canaliculatus_F_contig1397.3145.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1397.3145.1
Unique NamemRNA_H-canaliculatus_F_contig1397.3145.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1397.3145.1 vs. uniprot
Match: D7G6B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B1_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 1.090e-138
Identity = 242/400 (60.50%), Postives = 282/400 (70.50%), Query Frame = 1 
Query:    1 MMPGI-AAGFDLPQG--AGFGYQQLARF----QGSGALNPFHYTP--PHLLSSPAGLHGRYFPESMLSPAAGASSGGASSGARQLAPAHGRVREGSAAQEVKEEPEDTLCPRPHEIEMVDVLRRHGVSTPDAVQSLRQSANRVDVALQYAMDMANTRHENRQLDMARLESEKEKDRAAEVQRLKDKTLMVLGEVIPHFPQSLLLNEEDGCTTFRRFVAKLSAGDGLCSPALCAFRETATTLLFLERDAFRHYPENSCQIQAYLRKLIERLENHISGSETEGIGDTEXXXXXXXXXXXXXXXXXPXXTGRARRASHCNENENRADEDRETKRLTARVQEEVAALQSILYHFPKTPGGVPDAFLDNQAAQNAATLEKDGVEEDHDRNRSLRLKDSVVITIDD 1173
            MM GI A GF +P G  AGF +QQ   F    Q SG  NPF Y    P  L   AGL+ R+   S ++ +  +S+GGASSGA Q A    RVREG +AQEVKEEPED L PRP E+ MVD+LRRHGV+TPDAV  LRQS NRVDVAL+YAM+M NTRHENRQ DMAR+ESEKEKDRAAE Q+ +DK LMVLGEVIPHFP+S+LLN EDGCTTFR+FV +LSAGD    P LC FRETA TLLFLERDAFRHYPEN  QI+ Y  KLIER++NH +G +TE +                     P       RA+ C ++  R   D ET+ LTARV+EEV AL+SILY FPKTPGGVPDAFLD QAA ++ATLE+DGVEEDHD +RS R +D VVI +DD
Sbjct:    1 MMSGIPAGGFAMPAGPGAGFMFQQQGAFAQHLQASGGANPFVYAAAAPQALPHAAGLNARFLAGSAMAHSGASSAGGASSGAPQRASPRARVREGPSAQEVKEEPEDPLRPRPEEVGMVDMLRRHGVNTPDAVHCLRQSGNRVDVALRYAMEMKNTRHENRQTDMARVESEKEKDRAAEQQQEEDKILMVLGEVIPHFPKSILLNAEDGCTTFRQFVERLSAGD----PKLCDFRETAITLLFLERDAFRHYPENDRQIREYFGKLIERIQNHFTGRQTEEVEGASSQGGTETAKRSSSCEREP-------RANRCGDSSER---DEETESLTARVREEVEALRSILYGFPKTPGGVPDAFLDKQAA-HSATLERDGVEEDHDHSRSARSEDPVVIDVDD 385
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1397.3145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6B1_ECTSI1.090e-13860.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1397contigH-canaliculatus_F_contig1397:17947..21337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001200.1
Exons4
Model size1176
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1397.3145.1prot_H-canaliculatus_F_contig1397.3145.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1397 17947..21337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929142.330252-CDS-H-canaliculatus_F_contig1397:17946..181751622929142.330252-CDS-H-canaliculatus_F_contig1397:17946..18175Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 17947..18175 +
1696845693.583041-CDS-H-canaliculatus_F_contig1397:17946..181751696845693.583041-CDS-H-canaliculatus_F_contig1397:17946..18175Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 17947..18175 +
1622929142.3426998-CDS-H-canaliculatus_F_contig1397:19117..194611622929142.3426998-CDS-H-canaliculatus_F_contig1397:19117..19461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 19118..19461 +
1696845693.5972054-CDS-H-canaliculatus_F_contig1397:19117..194611696845693.5972054-CDS-H-canaliculatus_F_contig1397:19117..19461Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 19118..19461 +
1622929142.3528895-CDS-H-canaliculatus_F_contig1397:20445..206191622929142.3528895-CDS-H-canaliculatus_F_contig1397:20445..20619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 20446..20619 +
1696845693.606796-CDS-H-canaliculatus_F_contig1397:20445..206191696845693.606796-CDS-H-canaliculatus_F_contig1397:20445..20619Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 20446..20619 +
1622929142.3627667-CDS-H-canaliculatus_F_contig1397:20908..213371622929142.3627667-CDS-H-canaliculatus_F_contig1397:20908..21337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 20909..21337 +
1696845693.616862-CDS-H-canaliculatus_F_contig1397:20908..213371696845693.616862-CDS-H-canaliculatus_F_contig1397:20908..21337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1397 20909..21337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1397.3145.1

>prot_H-canaliculatus_F_contig1397.3145.1 ID=prot_H-canaliculatus_F_contig1397.3145.1|Name=mRNA_H-canaliculatus_F_contig1397.3145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=392bp
MMPGIAAGFDLPQGAGFGYQQLARFQGSGALNPFHYTPPHLLSSPAGLHG
RYFPESMLSPAAGASSGGASSGARQLAPAHGRVREGSAAQEVKEEPEDTL
CPRPHEIEMVDVLRRHGVSTPDAVQSLRQSANRVDVALQYAMDMANTRHE
NRQLDMARLESEKEKDRAAEVQRLKDKTLMVLGEVIPHFPQSLLLNEEDG
CTTFRRFVAKLSAGDGLCSPALCAFRETATTLLFLERDAFRHYPENSCQI
QAYLRKLIERLENHISGSETEGIGDTETASASAEARRTDTAARTPRPTGR
ARRASHCNENENRADEDRETKRLTARVQEEVAALQSILYHFPKTPGGVPD
AFLDNQAAQNAATLEKDGVEEDHDRNRSLRLKDSVVITIDD*
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mRNA from alignment at H-canaliculatus_F_contig1397:17947..21337+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1397.3145.1 ID=mRNA_H-canaliculatus_F_contig1397.3145.1|Name=mRNA_H-canaliculatus_F_contig1397.3145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3391bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1397:17947..21337+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGCCTGGAATAGCAGCAGGATTTGATTTGCCGCAAGGAGCCGGGTT
CGGGTACCAGCAGTTGGCTCGTTTTCAAGGGTCGGGTGCTTTGAACCCTT
TCCATTACACACCTCCGCACCTCCTCTCTTCCCCAGCTGGGTTGCATGGA
AGGTACTTCCCGGAATCAATGCTTTCTCCGGCAGCGGGTGCCTCGTCGGG
CGGGGCGTCGAGCGGAGCACGTCAACTAGGTGAGGTTGCTTGGACGCATT
TTTAGTGTCTTTTCGATCTTCGAGATCAAAAATGAAGTTGGACCTTACGA
GCAATTACCAAGTACCTCCGTAGTTCTCGGCAGGATCTCTTCCCACCCTT
CTTCGACTCGAAGGATCAAATGTTCTCCTTTTGACCGGGAAGGTTGATAT
GGAAATCATGGTTTGTTTATCACCTTGCCAGAGAACATCCGGATTCCCGG
CCGGATTCCCGGGTTAAAAATTGCAGGGATTGCTTCGACTCTCCGTCTTA
TTTTTTAAATCTCGGACTCTTCTCCGAGCCAGTTCAACCGGCAGCTGGAA
CCTTGAAGGATCCCGACCACGATCGTAGTCGATCGCAGAGAGCGGGAGCA
TTCTCTTCAGCGTTGTTAGAGGCATTTGACCGTTGCTGCCACCCCATCTG
TGTAAGGGAATACGGCAATCAGTATCGGCGTTTGATACAAAAGTAGTGAT
CTGCTGTGGTCGCGATAAAAAAATGGAGACTATGCCTCGAAAAGCTCATT
TCCGAAGGAGTACGACACGAGCGCATGCGATACTTGTTCGTCAATTGTGC
GAGGTTGTCCTCACATTGGGTTAGAAGTCAGCGATCAAAAGTATCACCAC
ATGTAATGAAGTCCAGTAGCACTGCTCCATTTGACCACGGTTCTAACGTT
CGGGTGTTGCTCATAGCTGTTTCTACAATCGTGGACATCTTGCGCCCTCT
CTTTTCAAGCACATCATGACATGTCATGAGCTGTTTTTTTAGATGTAACG
AAAAGACGTATCTGTAGCTACATGCGCCCATATTTTTAAATTTTTCAAAC
CGGACATGGCGACACCATCCTCCGCGCTCTGCTGTTCCCAACCAGGACGT
GATCAATGTTTCTTTGTTTTCCCCTTCCCGACGTGCTTGATGCATCTTGT
TGATGACCATCAATTCTACAGCCCCAGCTCACGGCCGGGTCCGTGAGGGT
TCAGCAGCGCAAGAGGTCAAAGAGGAACCGGAAGACACTCTCTGCCCAAG
ACCACATGAAATCGAGATGGTAGATGTCCTTCGCCGACATGGTGTATCCA
CACCTGACGCTGTACAAAGTCTACGTCAAAGTGCCAACAGGGTGGATGTT
GCCCTGCAGTATGCAATGGACATGGCTAATACTCGTCACGAAAACCGACA
GCTGGACATGGCTCGCCTGGAGTCTGAAAAGGAGAAGGATAGGGCCGCGG
AAGTGCAGCGACTCAAAGACAAGACCCTCATGGTGCTTGGCGAAGTGATA
CCGCATTTCCCACAGGTGCACGAGGGTGAATCACGTGGGTCAGGGTGCTA
AGTCGATCAGGGTCGTTATATCTTGTGAATTCATCCTTTCTTCCACAAAT
GACTGAAGGTTATAAGCCGTGTTTGGATTCGCACAGTGCATCCATCTGCG
GTGCTGCCATAGGTCGCACAACGCCCCTGACGTTTCACGCAACGAAATCA
GTGCGGATACCGATTTCGAGTCTACGGAAAGCCTTCTTGACATTTAATTC
ATCCTCCCAACGCCTGCTACTACCTTTCTCCATGTGTGCACGTACACATG
CATATCGAAAGCTTCGAACATCGGCCCTGATGAGGTGTCATAGCATGAAC
CACGATTAACCATTCCCGCATCTATACATCTGGTACGATATTCTCGACCA
TGTGACGATACTTTGTGTAACAGACATCGGCAATACTGTTCAATCCTTCG
GTCAATGTTGTCGGAGTAGAATTTCTTGCACACTAGCAACGCGTTTCAGC
AGCTTAACAGGGAATGGTTGAGAGCCCAGTCTGACATACCCATGAACACG
CAGACAAAGCGTACGTGTCTCGCTGTTTGGTGCCGACAAAGATATAGCAC
GAGACCCCCTTCTAACGAACCGAAGCTTCTTTACGTTGCTTTCAATTTGT
TCTGGTTGATTGTTTTGCGTTATTCAGCTTGACTAGTTGCTTGCAAGTAG
GCGATTTGACGAAGCAAGATAGCCGCAACTTTCTGCCTCCCTCGGCGTCT
CCAGCGACTCCCCCTTTCAGCCGAGAGAGGGCGGTTGAAACTCGCAACAG
CGAGGTCCCTCGCACCCGCTCGATCGGTCGCTTTGGTATCATGGCCTCGC
GTCATTCGCCGATTTTTTCATGTATCAGCGAAGATGTGACCACTTTTGAC
CACTTCACCTCTGTATCAGTTGACACTTGTACGTGTAATGAAGACTTGCT
TGCTTCTTTAACCCTCGATTCCCTCTCATTGCCGCCGCTTTCCTCGCAGT
CGCTCCTCTTAAACGAAGAGGACGGATGCACGACCTTTCGACGATTCGTA
GCAAAGCTTTCCGCGGGTGATGGTTTGTGCTCGCCGGCACTGTGTGCGTT
CCGCGAGACGGCGACAACTCTTCTTTTTCTTGAGCGAGATGCGTTCCGAC
ACTACCCTGAGAACAGCTGTCAGGTCCGTGGAGTGTGAGCACGACCACTT
GCATTTACCTCGGTGAGGCCCCGCTCTTCTTACGATTGAAACCGTTCTCG
TTCAGAGCTTCAAAGGGATGGAAACATCAATATTCCTGAATATTGTTACT
TTTACATCCCGGGAGTCAGTCGAACGTGAAAATTTTATACGCAAATCTCC
TCTGTCACATGGCATCGTCGAATGGGCAGTCCACCATCGGTCAACGCGTC
AGTGCCATGTGTTCCTGAACCCACCTCATCTCCACCTTGATCCCCTCACT
CCGTTTCCGCAGATCCAAGCATATTTGCGTAAGCTCATCGAACGATTAGA
AAACCACATCTCTGGATCTGAAACGGAGGGGATCGGCGACACAGAGACTG
CTTCTGCATCGGCAGAGGCAAGGAGGACTGACACAGCGGCCAGGACTCCG
AGACCCACCGGACGCGCAAGGAGAGCAAGTCATTGTAATGAAAATGAGAA
CAGAGCCGATGAAGACCGGGAGACGAAGAGGTTAACAGCTAGGGTGCAAG
AGGAAGTTGCAGCTCTGCAGAGTATTTTGTACCACTTCCCCAAGACACCA
GGGGGGGTTCCTGACGCGTTTCTCGATAATCAAGCAGCACAGAACGCCGC
CACATTGGAGAAAGATGGGGTAGAAGAAGACCACGATCGGAACCGTTCAC
TTCGATTGAAAGATTCTGTTGTGATCACCATTGATGACTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1397:17947..21337+

>mRNA_H-canaliculatus_F_contig1397.3145.1 ID=mRNA_H-canaliculatus_F_contig1397.3145.1|Name=mRNA_H-canaliculatus_F_contig1397.3145.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2352bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1397:17947..21337+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGCCTGGAATAGCAGCAGGATTTGATTTGCCGCAAGGAGCCGGGTT
CGGGTACCAGCAGTTGGCTCGTTTTCAAGGGTCGGGTGCTTTGAACCCTT
TCCATTACACACCTCCGCACCTCCTCTCTTCCCCAGCTGGGTTGCATGGA
AGGTACTTCCCGGAATCAATGCTTTCTCCGGCAGCGGGTGCCTCGTCGGG
CGGGGCGTCGAGCGGAGCACGTCAACTAGATGATGCCTGGAATAGCAGCA
GGATTTGATTTGCCGCAAGGAGCCGGGTTCGGGTACCAGCAGTTGGCTCG
TTTTCAAGGGTCGGGTGCTTTGAACCCTTTCCATTACACACCTCCGCACC
TCCTCTCTTCCCCAGCTGGGTTGCATGGAAGGTACTTCCCGGAATCAATG
CTTTCTCCGGCAGCGGGTGCCTCGTCGGGCGGGGCGTCGAGCGGAGCACG
TCAACTAGCCCCAGCTCACGGCCGGGTCCGTGAGGGTTCAGCAGCGCAAG
AGGTCAAAGAGGAACCGGAAGACACTCTCTGCCCAAGACCACATGAAATC
GAGATGGTAGATGTCCTTCGCCGACATGGTGTATCCACACCTGACGCTGT
ACAAAGTCTACGTCAAAGTGCCAACAGGGTGGATGTTGCCCTGCAGTATG
CAATGGACATGGCTAATACTCGTCACGAAAACCGACAGCTGGACATGGCT
CGCCTGGAGTCTGAAAAGGAGAAGGATAGGGCCGCGGAAGTGCAGCGACT
CAAAGACAAGACCCTCATGGTGCTTGGCGAAGTGATACCGCATTTCCCAC
AGCCCCAGCTCACGGCCGGGTCCGTGAGGGTTCAGCAGCGCAAGAGGTCA
AAGAGGAACCGGAAGACACTCTCTGCCCAAGACCACATGAAATCGAGATG
GTAGATGTCCTTCGCCGACATGGTGTATCCACACCTGACGCTGTACAAAG
TCTACGTCAAAGTGCCAACAGGGTGGATGTTGCCCTGCAGTATGCAATGG
ACATGGCTAATACTCGTCACGAAAACCGACAGCTGGACATGGCTCGCCTG
GAGTCTGAAAAGGAGAAGGATAGGGCCGCGGAAGTGCAGCGACTCAAAGA
CAAGACCCTCATGGTGCTTGGCGAAGTGATACCGCATTTCCCACAGTCGC
TCCTCTTAAACGAAGAGGACGGATGCACGACCTTTCGACGATTCGTAGCA
AAGCTTTCCGCGGGTGATGGTTTGTGCTCGCCGGCACTGTGTGCGTTCCG
CGAGACGGCGACAACTCTTCTTTTTCTTGAGCGAGATGCGTTCCGACACT
ACCCTGAGAACAGCTGTCAGTCGCTCCTCTTAAACGAAGAGGACGGATGC
ACGACCTTTCGACGATTCGTAGCAAAGCTTTCCGCGGGTGATGGTTTGTG
CTCGCCGGCACTGTGTGCGTTCCGCGAGACGGCGACAACTCTTCTTTTTC
TTGAGCGAGATGCGTTCCGACACTACCCTGAGAACAGCTGTCAGATCCAA
GCATATTTGCGTAAGCTCATCGAACGATTAGAAAACCACATCTCTGGATC
TGAAACGGAGGGGATCGGCGACACAGAGACTGCTTCTGCATCGGCAGAGG
CAAGGAGGACTGACACAGCGGCCAGGACTCCGAGACCCACCGGACGCGCA
AGGAGAGCAAGTCATTGTAATGAAAATGAGAACAGAGCCGATGAAGACCG
GGAGACGAAGAGGTTAACAGCTAGGGTGCAAGAGGAAGTTGCAGCTCTGC
AGAGTATTTTGTACCACTTCCCCAAGACACCAGGGGGGGTTCCTGACGCG
TTTCTCGATAATCAAGCAGCACAGAACGCCGCCACATTGGAGAAAGATGG
GGTAGAAGAAGACCACGATCGGAACCGTTCACTTCGATTGAAAGATTCTG
TTGTGATCACCATTGATGACTGAATCCAAGCATATTTGCGTAAGCTCATC
GAACGATTAGAAAACCACATCTCTGGATCTGAAACGGAGGGGATCGGCGA
CACAGAGACTGCTTCTGCATCGGCAGAGGCAAGGAGGACTGACACAGCGG
CCAGGACTCCGAGACCCACCGGACGCGCAAGGAGAGCAAGTCATTGTAAT
GAAAATGAGAACAGAGCCGATGAAGACCGGGAGACGAAGAGGTTAACAGC
TAGGGTGCAAGAGGAAGTTGCAGCTCTGCAGAGTATTTTGTACCACTTCC
CCAAGACACCAGGGGGGGTTCCTGACGCGTTTCTCGATAATCAAGCAGCA
CAGAACGCCGCCACATTGGAGAAAGATGGGGTAGAAGAAGACCACGATCG
GAACCGTTCACTTCGATTGAAAGATTCTGTTGTGATCACCATTGATGACT
GA
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