mRNA_H-canaliculatus_F_contig13964.3140.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13964.3140.1
Unique NamemRNA_H-canaliculatus_F_contig13964.3140.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A6H5JQH2_9PHAE (Metallophos domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQH2_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.570e-46
Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNHRYA---RRHFVRMCRKYGNVKAWFSGHFHL 255
            HEVFIDEAQM+WFEQQLAAHS EDGWKV+VFSHAPPMGSGLRVVQGVHIKNQCAWLNH      RR+F+RMCRKYG++KAWFSGHFHL
Sbjct:  221 HEVFIDEAQMRWFEQQLAAHSAEDGWKVMVFSHAPPMGSGLRVVQGVHIKNQCAWLNHSVGDRERRYFLRMCRKYGHIKAWFSGHFHL 308
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A7S0N202_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N202_9CRYP)

HSP 1 Score: 117 bits (293), Expect = 1.430e-31
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNH--RYARRHFVRMCRKYGNVKAWFSGHFHL 255
            HEV++D+ Q+ WFE+ L  H   DGWKV+VF+HAP MGSGL V+QGVH+KN CAW+NH     RR F  +C ++  VKAWFSGHFHL
Sbjct:   26 HEVYVDQEQIDWFEKTLKEHPASDGWKVLVFTHAPIMGSGLTVLQGVHVKNGCAWINHTDEKTRRIFYALCVEHRCVKAWFSGHFHL 112
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A7R9W5H6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5H6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.620e-31
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNHRYAR--RHFVRMCRKYGNVKAWFSGHFHL 255
            HEV +D AQ+ WFEQ L  H  +DGWK+ VF+HAPP GSGLRV+Q  H+ N C WLNH   +  R F+ + R+Y ++KAWFSGHFHL
Sbjct:   13 HEVIVDTAQIDWFEQLLMTHPADDGWKIFVFTHAPPNGSGLRVLQENHVVNGCCWLNHSNEKQCRRFIELVREYRSIKAWFSGHFHL 99
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A7S0I2M8_9CRYP (Hypothetical protein n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0I2M8_9CRYP)

HSP 1 Score: 122 bits (307), Expect = 6.150e-31
Identity = 52/87 (59.77%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNH--RYARRHFVRMCRKYGNVKAWFSGHFHL 255
            HEV++D+ Q++WF++ L  HS +DGWKV+VF+HAP MGSGLR +QGVHIKN CAW+NH     RR F  +C K+  ++AWFSGHFHL
Sbjct:  160 HEVYVDQEQIEWFDRVLEHHSAKDGWKVLVFTHAPIMGSGLRTLQGVHIKNGCAWINHTEEKTRRKFFELCNKHACIRAWFSGHFHL 246
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A836CA66_9STRA (Calcineurin-like phosphoesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA66_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.210e-30
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNHRYA---RRHFVRMCRKYGNVKAWFSGHFHL 255
            HEV I   Q+ W ++  AAH+ +DGW+V+VF+HAPPMGSGLRVVQ VHIKN CAWLNH      RR F   CRKY  + AWFSGHFHL
Sbjct:  124 HEVHIPRDQLDWLDRVCAAHAADDGWRVLVFTHAPPMGSGLRVVQDVHIKNGCAWLNHSAPDAERRAFAEACRKYPQISAWFSGHFHL 211
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A7S1UHX4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHX4_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.260e-30
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNH---RYARRHFVRMCRKYGNVKAWFSGHFHL 255
            HEV +D+ Q+ WFE QL AH   DGW+V+VF+HAPP+GSG+R +QGVHIKN CAWLNH      RR F+R+ +++  VKAWFSGHFHL
Sbjct:  109 HEVHVDDLQLAWFEAQLEAHPAGDGWRVLVFTHAPPLGSGVRALQGVHIKNGCAWLNHTSDEKRRRAFLRLVQQHPCVKAWFSGHFHL 196
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A7S0CZE4_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CZE4_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 1.600e-29
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNHRY---ARRHFVRMCRKYGNVKAWFSGHFHL 255
            HEV+I   Q+ WF+  L  H  EDGW +IVFSHAPPMGSGLRV+  VH++N CAWLNH     +RR F R+ R++G V AWFSGHFHL
Sbjct:  208 HEVYISGKQLDWFQDVLNRHPSEDGWNIIVFSHAPPMGSGLRVLNSVHVRNTCAWLNHAQIPSSRRAFHRLARQHGGVVAWFSGHFHL 295
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A7S2PFS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PFS9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.170e-29
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNHRYARR--HFVRMCRKYGNVKAWFSGHFHL 255
            HEV ID+ Q+ WFE  ++ H  EDGWK+ VFSHAPP GSGLRV+Q  H+ N C WLNH    +   F+ + R++ ++KAWFSGHFHL
Sbjct:   19 HEVTIDQQQIDWFENLVSTHKAEDGWKIFVFSHAPPNGSGLRVLQENHVVNGCCWLNHSNEEQCQKFINLVREHRSIKAWFSGHFHL 105
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: W7TNN9_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNN9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.680e-29
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNHRYA---RRHFVRMCRKYGNVKAWFSGHFHL 255
            HEV+I + Q  W E  L  H +E+GW+V+VFSHAPPMG+G+RVVQ VHIKN CA+LNH      RR F+R+C++Y  +KAWFSGHFHL
Sbjct:  199 HEVYIPKEQTIWLENLLKQHPEEEGWRVLVFSHAPPMGAGIRVVQNVHIKNGCAFLNHSSGDEERRVFIRLCKQYHCIKAWFSGHFHL 286
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BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Match: A0A0M0K1I1_9EUKA (Metallophos domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1I1_9EUKA)

HSP 1 Score: 116 bits (290), Expect = 9.650e-29
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    1 HEVFIDEAQMQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNHRYAR--RHFVRMCRKYGNVKAWFSGHFHL 255
            HEV IDEAQ+ WFE  L  H  E+GWK+ +FSHAPP+GSGLRV+Q  H+ N C WLNH   +  R F+ + RK+ ++KAWFSGHFHL
Sbjct:  131 HEVTIDEAQLAWFESMLEEHPAEEGWKIFMFSHAPPIGSGLRVLQENHVVNGCCWLNHSGGKTTRKFIELVRKHRSIKAWFSGHFHL 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13964.3140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQH2_9PHAE3.570e-4685.23Metallophos domain-containing protein n=2 Tax=Ecto... [more]
A0A7S0N202_9CRYP1.430e-3159.77Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7R9W5H6_9STRA1.620e-3157.47Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0I2M8_9CRYP6.150e-3159.77Hypothetical protein n=3 Tax=Geminigeraceae TaxID=... [more]
A0A836CA66_9STRA1.210e-3062.50Calcineurin-like phosphoesterase n=1 Tax=Tribonema... [more]
A0A7S1UHX4_9STRA1.260e-3061.36Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0CZE4_9EUKA1.600e-2960.23Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A7S2PFS9_9STRA2.170e-2955.17Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
W7TNN9_9STRA3.680e-2960.23Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A0M0K1I1_9EUKA9.650e-2958.62Metallophos domain-containing protein n=1 Tax=Chry... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13964contigH-canaliculatus_F_contig13964:376..1881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue4e-34
Seed eggNOG ortholog2880.D8LCJ9
EggNOG OGs28TDQ@1,2R044@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13964.3140.1prot_H-canaliculatus_F_contig13964.3140.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13964 376..1854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929141.7152355-CDS-H-canaliculatus_F_contig13964:375..4531622929141.7152355-CDS-H-canaliculatus_F_contig13964:375..453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13964 376..453 -
1696845693.2333124-CDS-H-canaliculatus_F_contig13964:375..4531696845693.2333124-CDS-H-canaliculatus_F_contig13964:375..453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13964 376..453 -
1622929141.7329538-CDS-H-canaliculatus_F_contig13964:1318..14201622929141.7329538-CDS-H-canaliculatus_F_contig13964:1318..1420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13964 1319..1420 -
1696845693.2451653-CDS-H-canaliculatus_F_contig13964:1318..14201696845693.2451653-CDS-H-canaliculatus_F_contig13964:1318..1420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13964 1319..1420 -
1622929141.7512808-CDS-H-canaliculatus_F_contig13964:1800..18541622929141.7512808-CDS-H-canaliculatus_F_contig13964:1800..1854Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13964 1801..1854 -
1696845693.2550905-CDS-H-canaliculatus_F_contig13964:1800..18541696845693.2550905-CDS-H-canaliculatus_F_contig13964:1800..1854Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13964 1801..1854 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929141.7703378-UTR-H-canaliculatus_F_contig13964:1854..18811622929141.7703378-UTR-H-canaliculatus_F_contig13964:1854..1881Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13964 1855..1881 -
1696845693.2643535-UTR-H-canaliculatus_F_contig13964:1854..18811696845693.2643535-UTR-H-canaliculatus_F_contig13964:1854..1881Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13964 1855..1881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13964.3140.1

>prot_H-canaliculatus_F_contig13964.3140.1 ID=prot_H-canaliculatus_F_contig13964.3140.1|Name=mRNA_H-canaliculatus_F_contig13964.3140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
MQWFEQQLAAHSKEDGWKVIVFSHAPPMGSGLRVVQGVHIKNQCAWLNHR
YARRHFVRMCRKYGNVKAWFSGHFHLR*
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mRNA from alignment at H-canaliculatus_F_contig13964:376..1881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13964.3140.1 ID=mRNA_H-canaliculatus_F_contig13964.3140.1|Name=mRNA_H-canaliculatus_F_contig13964.3140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13964:376..1881- (Hapterophycus canaliculatus Oshoro5f female)
CATGAGGTCTTCATCGACGAGGCCCAAATGCAGTGGTTCGAGCAGCAGCT
AGCGGCGCACTCGAAGGAAGACGGCTGGAAGGTATCGTTCGAGAAGCAAA
AAACGTTGCTGACCGGTCCGTAAAACGGACTTGGCACGAATTTTATTCGG
CCGTAGTCTCGCTCCAGGCGAGGCGCGCATGACTGCTAGTGTTTCCGGGT
TCCCTCGTCGCACCGCACCGTGCCGTACTACACCGTACCGTACCATGCCA
TACCGTACCATGCCGTACCGTACCATACCGTACCATGCCTTACTGTCCGG
CCTCGATTTGCCGTCACAATATTTGCCTCTGCTGCTGTTTTTGTTGTTGT
TGCCGTTGTTATCGTTGTTGTTGTCGCTGCGTGTGCTGATTCAGCTGCCG
CCAACACCGCCGCTTCTGCCGTTCTGTTCGTCGCCCTTCCGCCCGCCCCG
CGCCCCAAAAGGTTATCGTGTTCTCGCACGCCCCGCCCATGGGCTCCGGA
TTGCGTGTAGTGCAGGGAGTGCACATCAAGAACCAGTGCGCGTGGTTGAA
CCACAGGTACGCCGTAGTCGTACAACATGCCTCGGAACACATCCTACGGG
AAGCGATCTGATCTATCGGGGTGGTTGGACGCCTTCGTTCCTACCCTTTC
CTACCCTACACGAAAGTTGGCGCGGCAAGACTAGGGGTCATCTGTCGGGC
TTGTTGAAACGCTTTTGGGGAGGGAGACAGGGAGTTCGGTTGCCCCTGGG
AGGGGGGGGTGCGGGCGGGGGGCGAACCGTGGCGAGGGATACAAAACCTC
GTTGCTTGCTCTGTCTCCGTCTCCGTCTCCGTCTCCGCCTCTGTCTATTT
CTGTCTCCGGCTCCGGCTCCGGCTCCGGCTCCGTCTCCGTCTCCGTCTCC
GTCTCTGCCTCTCTCTCTGCCTCCCGCTGTCCCTCTCTGTCTCTCTCTTG
GAGGAGGGGGGAGAATCTACTCTTAACAAAACGGGAAATTGATGGTTCGA
CGACTTGGGACTTACTTTGTGTACGAGCCAAGGCCTACTGGGTAGTTGAT
GTGCGCCCCAATACGTAGCAGGGAACTACGCGTCTAACATGGGCGCTTCT
AGCCTCTAACCGCCTAATTTTCCTCGCACACAAGCTTGTTTGACCCGCTG
TTCTCTCCATGAGGGTTATTTCGACATCTCGCGGGAACATTTTGCTACGC
GGGAGCTGCTGCCATCTTTACTGAGCCTTGGATACGTGTCTGTCTCTCGT
GCTTGCCTGTTGAGTCTACTACTCTGTTGTTATGGTGCTTTGTTGGTCGG
TGGTCTATTGAAAGTTTGCTTTGTTTCGGCCGAATGGTGTGTTGATGACG
CGTACTTTGCTTCCCTCAGCGCGTCTTGTTCTTGATCTCCGCTCGTCCTT
TCCCCCCACCAGTGTCGGAGACAGGGAGCGGCGGCACTTCGTGAGGATGT
GCCGCAAGTACGGGAACGTCAAGGCGTGGTTCTCGGGCCACTTCCACCTC
AGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13964:376..1881-

>mRNA_H-canaliculatus_F_contig13964.3140.1 ID=mRNA_H-canaliculatus_F_contig13964.3140.1|Name=mRNA_H-canaliculatus_F_contig13964.3140.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13964:376..1881- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGTGGTTCGAGCAGCAGCTAGCGGCGCACTCGAAGGAAGACGGCTG
GAAGATGCAGTGGTTCGAGCAGCAGCTAGCGGCGCACTCGAAGGAAGACG
GCTGGAAGGTTATCGTGTTCTCGCACGCCCCGCCCATGGGCTCCGGATTG
CGTGTAGTGCAGGGAGTGCACATCAAGAACCAGTGCGCGTGGTTGAACCA
CAGGTACGCCGTTATCGTGTTCTCGCACGCCCCGCCCATGGGCTCCGGAT
TGCGTGTAGTGCAGGGAGTGCACATCAAGAACCAGTGCGCGTGGTTGAAC
CACAGGTACGCCCGGCGGCACTTCGTGAGGATGTGCCGCAAGTACGGGAA
CGTCAAGGCGTGGTTCTCGGGCCACTTCCACCTCAGGTAACGGCGGCACT
TCGTGAGGATGTGCCGCAAGTACGGGAACGTCAAGGCGTGGTTCTCGGGC
CACTTCCACCTCAGGTAA
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