mRNA_H-canaliculatus_F_contig13956.3138.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13956.3138.1
Unique NamemRNA_H-canaliculatus_F_contig13956.3138.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13956.3138.1 vs. uniprot
Match: A0A6H5K3I7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I7_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.860e-36
Identity = 149/343 (43.44%), Postives = 170/343 (49.56%), Query Frame = 1 
Query:    1 VEEADVYGALEGSLESTTKVSIRSTGCVSGNVIYKKMSMEDGGELEGTFECSNRASGRLRNREGVPAEGLDRLLARNGEAADRGXXXXXXXXXXXXXXXXXXXXXXXXREQSPLPWEHRQEQ--------------------GDGGLGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGD----AGSLSAGTSVGTLPPPPTPPTSADARPTPAAAA---PVRLSSPLRSG-GLQVQSLGAEAAEMFSAEAVTPTG----GPSELPGGATGKGTGARQGRLPLKVGRGGGEHPGVGAEGSAPQEG---GSSTSVAARVVTWPPVSPAPAG-RLWHRRQE 921
            VEEADVYG+L+GSLEST KVSIRSTG VSGNVIYKKM++EDGGELEGTFECS RA GRLRNREG    G+  L  R G   D G                         +QSP+ W++ Q                      G G +G A        XXXXXXXXXX              G       + +A T VGT          A  R TP  A     VR  SPLRS  GLQVQ LGAEA E+FS EAVTP G    G ++LP  A  + + A  G                  +GSA +EG   G  TSVAARV TWPP SP P+  RLW +R E
Sbjct:  137 VEEADVYGSLDGSLESTAKVSIRSTGSVSGNVIYKKMTLEDGGELEGTFECS-RAGGRLRNREGSATGGVGGL--RRGSRVDSGASAVRDNQNTISPPG----------KQSPILWQNGQGAAYAGGAXXXXXXXXXEEAWAGGGRVGAALERAGVGGXXXXXXXXXXSVMSSVAGLESSPRGHPVTPGDTAAATTPVGTG-------GGARRRVTPTGAGRSTAVRAPSPLRSTRGLQVQGLGAEAGELFSEEAVTPVGESGAGVTDLPS-ARSRRSSATAGXXXXXX------XXXXXCDGSAEEEGTSGGGGTSVAARVGTWPPPSPVPSSTRLWQKRTE 452
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BLAST of mRNA_H-canaliculatus_F_contig13956.3138.1 vs. uniprot
Match: D7FYJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ5_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 7.630e-33
Identity = 145/336 (43.15%), Postives = 162/336 (48.21%), Query Frame = 1 
Query:    1 VEEADVYGALEGSLESTTKVSIRSTGCVSGNVIYKKMSMEDGGELEGTFECSNRASGRLRNREGVPAEGLDRLLARNGEAADRGXXXXXXXXXXXXXXXXXXXXXXXXREQSPLPWEHRQEQ-------------------GDGGLGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAGSLS-AGTSVGTLPPPPTPPTSADARPTPAAAA---PVRLSSPLR-SGGLQVQSLGAEAAEMFSAEAVTPTG----GPSELPGGATGKGTGARQGRLPLKVGRGGGEHPGVGAEGSAPQEGGSSTSVAARVVTWPPVSPAPAG-RLWHRRQE 921
            VEEADVYG+L+GSLES+ KVSIRSTG VSGNVIYKKM+MEDGGELEGTFECSNR  GRLRNREG    G+  L  R G   D G                         +QSP+ W++ Q                     G G +G A      XXXXXXXXXXXXXX           +     +   GT+  T P        A  R TP  A     VR  SPLR + GLQVQ LGAEA E+F  EAVTP G    G + LP          R  RL    G                      TSVAARV TWPP SP P+  RLW RR E
Sbjct:  137 VEEADVYGSLDGSLESSAKVSIRSTGSVSGNVIYKKMTMEDGGELEGTFECSNRVGGRLRNREGSATGGVGGL--RRGSRDDSGALAVRDNQNTISPPG----------KQSPILWQNGQGAAYAGXXXXXXXXXXXEAWAGGGRVGAALERAGGXXXXXXXXXXXXXXSVMSSVARLEASPRGNPVPPGGTAAATTPVGVGTGGGALRRITPTGAGLSTAVRAPSPLRPTRGLQVQGLGAEAGELFCEEAVTPVGESGAGVTNLPS--------TRSRRLSATAGXXXXXXXXXXXXXXXXXXXXXXTSVAARVGTWPPPSPVPSSTRLWQRRTE 452
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13956.3138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3I7_9PHAE4.860e-3643.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FYJ5_ECTSI7.630e-3343.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13956contigH-canaliculatus_F_contig13956:114..2119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-23_002970.1
Exons3
Model size933
Cds size933
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13956.3138.1prot_H-canaliculatus_F_contig13956.3138.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13956 114..2119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.7586532-CDS-H-canaliculatus_F_contig13956:113..5901622929140.7586532-CDS-H-canaliculatus_F_contig13956:113..590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13956 114..590 -
1696845692.748249-CDS-H-canaliculatus_F_contig13956:113..5901696845692.748249-CDS-H-canaliculatus_F_contig13956:113..590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13956 114..590 -
1622929140.7703164-CDS-H-canaliculatus_F_contig13956:917..12621622929140.7703164-CDS-H-canaliculatus_F_contig13956:917..1262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13956 918..1262 -
1696845692.7571194-CDS-H-canaliculatus_F_contig13956:917..12621696845692.7571194-CDS-H-canaliculatus_F_contig13956:917..1262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13956 918..1262 -
1622929140.7931178-CDS-H-canaliculatus_F_contig13956:2008..21191622929140.7931178-CDS-H-canaliculatus_F_contig13956:2008..2119Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13956 2009..2119 -
1696845692.7678754-CDS-H-canaliculatus_F_contig13956:2008..21191696845692.7678754-CDS-H-canaliculatus_F_contig13956:2008..2119Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13956 2009..2119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13956.3138.1

>prot_H-canaliculatus_F_contig13956.3138.1 ID=prot_H-canaliculatus_F_contig13956.3138.1|Name=mRNA_H-canaliculatus_F_contig13956.3138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=311bp
VEEADVYGALEGSLESTTKVSIRSTGCVSGNVIYKKMSMEDGGELEGTFE
CSNRASGRLRNREGVPAEGLDRLLARNGEAADRGGGGGGAGAASSPAEQD
GGRTSTPPREQSPLPWEHRQEQGDGGLGEAAAAAAVVLGGGDGGRGGTVA
SSAAGGGTPPPAGDAGSLSAGTSVGTLPPPPTPPTSADARPTPAAAAPVR
LSSPLRSGGLQVQSLGAEAAEMFSAEAVTPTGGPSELPGGATGKGTGARQ
GRLPLKVGRGGGEHPGVGAEGSAPQEGGSSTSVAARVVTWPPVSPAPAGR
LWHRRQEVRC*
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mRNA from alignment at H-canaliculatus_F_contig13956:114..2119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13956.3138.1 ID=mRNA_H-canaliculatus_F_contig13956.3138.1|Name=mRNA_H-canaliculatus_F_contig13956.3138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2006bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13956:114..2119- (Hapterophycus canaliculatus Oshoro5f female)
GTGGAAGAGGCGGACGTGTATGGAGCGTTGGAAGGGTCGCTGGAGTCAAC
GACCAAGGTTTCCATCCGCTCCACCGGATGCGTCTCCGGCAATGTCATCT
ACAAGAAGATGGTGCGTCCTGACGAAGAGCGGAGGTATTTGTCTTTCACC
TGGGTGTTCTCGTTGGCGATGCCGCCGGGGTGGTCGGGGTAGTGGTGATG
GCGGTTGTGGTGTGCAAAATGGATTGTTTCGGCTTCGTTTGGAGATGTGG
TCGTCGCTCGAGTTGTGATATATTTTTAAATGTTTTCCCCCGCTTGGGGG
CGATTTTCCTCTTATTCCTGGTCGGATCTTTGGTCGACATTTGGCGGAAA
GTATACGGCAAGCGCCTGTTCTTGTCCGTGTAACCCCCCGCACACGGCGT
CGAGTATGAGCAGCGAGGTGAGTGGGGCATTTTTGTTCTGCCTCGGCCAT
CTACCGGAGAGAAGGGATTTTATGAAACAAGTCAACAGCACCGAAGGAAT
ACCCACCTAAGACACTGTCCATCTCAACGGGCTTTTGTTAATTCCGTTCA
GTGGGGGTTACATTCGAGTGACAGGATGAAATGATGTATCAGTAGGCAAG
TGGTGGACAAACACGTGAAAAACGTAAGATGGGGGATGGACAAAAACAGA
AAGGTGGTTTTTAGGTTTTTATGTTACGTGGTCGTGTCTCTGGGGGTGTG
ACCTGCGTCGTGTGCCCAGCAGTCGCCCACCCGAACCTCACCTCCCCGCA
TCGTGCAATCGCGCGTGCTCTTCACGGCATCCTTCCTCGAACCTCGTGCG
CGCGATGATGAACGTCCACTACCCCGACCGCAACGACGGCGACGCCTCCG
GCGCCAGTCCATGGAGGACGGGGGCGAGCTCGAAGGAACGTTCGAGTGCA
GCAACCGGGCTTCCGGAAGGCTGCGCAACCGAGAAGGCGTGCCGGCGGAG
GGCCTCGATCGGCTCCTGGCGAGGAACGGCGAAGCCGCCGATCGCGGCGG
CGGCGGCGGTGGCGCTGGAGCGGCCTCTTCTCCTGCCGAGCAGGATGGAG
GCCGAACCTCGACGCCTCCGCGGGAGCAGTCCCCTCTCCCCTGGGAGCAC
CGGCAAGAGCAGGGAGACGGCGGTCTGGGCGAGGCGGCGGCGGCGGCCGC
TGTCGTGCTAGGTGGTGGGGACGGGGGCAGAGGCGGCACCGTGGCGTCGT
CCGTGGCCCGCTTGGAAACGGCCACGGCGCATCCGTCCTCGGAGTCGTCG
GCGGCAGCGGCGGCGGCAGCGGCGGCGGGCGGGTTTGTGACTCCTGTCGC
GGGTGTCGCGGGTGTTGGCCCAGGCGGAGGCGAAAGCGGCTGGAGCGGCA
GGGCGGCGAGAAGACCGGCGCCGGGGATCACATCCGCCGCCGGTCCTCCT
CCTCCGTCGACTGCGGCGACGGCAACGGCAGCGGCGACGGCAACGGCAGC
GGCGACGGCAACGGCAGCGGCGACGGCAACGGCAGCGGCGGCGGTAGCGA
CGCCCCGAAAATTCCCCCCGACCCGGAAGGCTGCCGGCGGCGGCACTCCA
CCCCCCGCCGGCGACGCGGGAAGCCTCTCAGCGGGGACCTCGGTCGGAAC
TCTTCCGCCACCACCGACCCCTCCTACCAGCGCGGACGCACGGCCTACCC
CGGCGGCAGCGGCGCCGGTGCGCCTCTCCTCCCCCTTGAGGTCGGGGGGC
TTACAGGTGCAGAGCCTCGGGGCCGAGGCGGCGGAAATGTTCAGCGCGGA
GGCGGTGACGCCGACGGGGGGGCCGTCGGAGCTGCCGGGCGGGGCGACGG
GGAAGGGGACGGGGGCGCGGCAGGGCCGGCTGCCTCTGAAGGTCGGGAGA
GGGGGCGGCGAACACCCAGGCGTCGGCGCGGAGGGTTCGGCGCCGCAGGA
GGGCGGCAGCAGCACGAGCGTGGCGGCGAGGGTTGTGACGTGGCCACCGG
TCTCCCCGGCCCCGGCAGGGCGGCTCTGGCACAGACGGCAGGAGGTACGT
TGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13956:114..2119-

>mRNA_H-canaliculatus_F_contig13956.3138.1 ID=mRNA_H-canaliculatus_F_contig13956.3138.1|Name=mRNA_H-canaliculatus_F_contig13956.3138.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1866bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13956:114..2119- (Hapterophycus canaliculatus Oshoro5f female)
GTGGAAGAGGCGGACGTGTATGGAGCGTTGGAAGGGTCGCTGGAGTCAAC
GACCAAGGTTTCCATCCGCTCCACCGGATGCGTCTCCGGCAATGTCATCT
ACAAGAAGATGGTGGAAGAGGCGGACGTGTATGGAGCGTTGGAAGGGTCG
CTGGAGTCAACGACCAAGGTTTCCATCCGCTCCACCGGATGCGTCTCCGG
CAATGTCATCTACAAGAAGATGTCCATGGAGGACGGGGGCGAGCTCGAAG
GAACGTTCGAGTGCAGCAACCGGGCTTCCGGAAGGCTGCGCAACCGAGAA
GGCGTGCCGGCGGAGGGCCTCGATCGGCTCCTGGCGAGGAACGGCGAAGC
CGCCGATCGCGGCGGCGGCGGCGGTGGCGCTGGAGCGGCCTCTTCTCCTG
CCGAGCAGGATGGAGGCCGAACCTCGACGCCTCCGCGGGAGCAGTCCCCT
CTCCCCTGGGAGCACCGGCAAGAGCAGGGAGACGGCGGTCTGGGCGAGGC
GGCGGCGGCGGCCGCTGTCGTGCTAGGTGGTGGGGACGGGGGCAGAGGCG
GCACCGTGGCGTCGTCCTCCATGGAGGACGGGGGCGAGCTCGAAGGAACG
TTCGAGTGCAGCAACCGGGCTTCCGGAAGGCTGCGCAACCGAGAAGGCGT
GCCGGCGGAGGGCCTCGATCGGCTCCTGGCGAGGAACGGCGAAGCCGCCG
ATCGCGGCGGCGGCGGCGGTGGCGCTGGAGCGGCCTCTTCTCCTGCCGAG
CAGGATGGAGGCCGAACCTCGACGCCTCCGCGGGAGCAGTCCCCTCTCCC
CTGGGAGCACCGGCAAGAGCAGGGAGACGGCGGTCTGGGCGAGGCGGCGG
CGGCGGCCGCTGTCGTGCTAGGTGGTGGGGACGGGGGCAGAGGCGGCACC
GTGGCGTCGTCCGCTGCCGGCGGCGGCACTCCACCCCCCGCCGGCGACGC
GGGAAGCCTCTCAGCGGGGACCTCGGTCGGAACTCTTCCGCCACCACCGA
CCCCTCCTACCAGCGCGGACGCACGGCCTACCCCGGCGGCAGCGGCGCCG
GTGCGCCTCTCCTCCCCCTTGAGGTCGGGGGGCTTACAGGTGCAGAGCCT
CGGGGCCGAGGCGGCGGAAATGTTCAGCGCGGAGGCGGTGACGCCGACGG
GGGGGCCGTCGGAGCTGCCGGGCGGGGCGACGGGGAAGGGGACGGGGGCG
CGGCAGGGCCGGCTGCCTCTGAAGGTCGGGAGAGGGGGCGGCGAACACCC
AGGCGTCGGCGCGGAGGGTTCGGCGCCGCAGGAGGGCGGCAGCAGCACGA
GCGTGGCGGCGAGGGTTGTGACGTGGCCACCGGTCTCCCCGGCCCCGGCA
GGGCGGCTCTGGCACAGACGGCAGGAGGTACGTTGTTGAGCTGCCGGCGG
CGGCACTCCACCCCCCGCCGGCGACGCGGGAAGCCTCTCAGCGGGGACCT
CGGTCGGAACTCTTCCGCCACCACCGACCCCTCCTACCAGCGCGGACGCA
CGGCCTACCCCGGCGGCAGCGGCGCCGGTGCGCCTCTCCTCCCCCTTGAG
GTCGGGGGGCTTACAGGTGCAGAGCCTCGGGGCCGAGGCGGCGGAAATGT
TCAGCGCGGAGGCGGTGACGCCGACGGGGGGGCCGTCGGAGCTGCCGGGC
GGGGCGACGGGGAAGGGGACGGGGGCGCGGCAGGGCCGGCTGCCTCTGAA
GGTCGGGAGAGGGGGCGGCGAACACCCAGGCGTCGGCGCGGAGGGTTCGG
CGCCGCAGGAGGGCGGCAGCAGCACGAGCGTGGCGGCGAGGGTTGTGACG
TGGCCACCGGTCTCCCCGGCCCCGGCAGGGCGGCTCTGGCACAGACGGCA
GGAGGTACGTTGTTGA
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