mRNA_H-canaliculatus_F_contig13951.3136.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13951.3136.1
Unique NamemRNA_H-canaliculatus_F_contig13951.3136.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: A0A6H5KFL7_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL7_9PHAE)

HSP 1 Score: 466 bits (1200), Expect = 9.690e-158
Identity = 228/243 (93.83%), Postives = 236/243 (97.12%), Query Frame = 1
Query:    1 RMNARDASNLEGVGDLTAAGVRLGNRTFNALKRDIRKKKEKGMSSGGRVEGATRSTQEGVMDPRTRLLVFKMVNAGTLLEVHGMVKTGKEAHVYHALAPEDPETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHEKV 729
            RMNARDASNLEGVGDLTAAGVRLGNRTFN+LKRDIRKKKEKGM++GGRVE ATRSTQEGVMDPRTRLL+FKM N GTLLEVHGMVKTGKEAHVYHALAPEDPE +TGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSR+KMFAIWAKKEHRNLLRL RAGIPCPEPIKQREHTLVLSFIG DHWPAPQLRE+DLSKANWRRCYA+VLELARLMF KCHLVHADLSEYNVLYHEKV
Sbjct:  370 RMNARDASNLEGVGDLTAAGVRLGNRTFNSLKRDIRKKKEKGMAAGGRVEQATRSTQEGVMDPRTRLLLFKMQNNGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSREKMFAIWAKKEHRNLLRLHRAGIPCPEPIKQREHTLVLSFIGKDHWPAPQLREIDLSKANWRRCYAEVLELARLMFVKCHLVHADLSEYNVLYHEKV 612          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: D7FKT3_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT3_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 3.430e-115
Identity = 164/172 (95.35%), Postives = 166/172 (96.51%), Query Frame = 1
Query:  214 MVNAGTLLEVHGMVKTGKEAHVYHALAPEDPETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHEKV 729
            M N GTLLEVHGMVKTGKEAHVYHALAPEDPE +TGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRL RAGIPCPEPIKQREHTLVLSFIG DHWPAPQLRE+DLSKANWRRCYAQVLELARLMF KCHLVHADLSEYNVLYHEKV
Sbjct:    1 MQNTGTLLEVHGMVKTGKEAHVYHALAPEDPEAMTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLHRAGIPCPEPIKQREHTLVLSFIGKDHWPAPQLREIDLSKANWRRCYAQVLELARLMFLKCHLVHADLSEYNVLYHEKV 172          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: K8Z663_NANGC (Non-specific serine/threonine protein kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z663_NANGC)

HSP 1 Score: 227 bits (578), Expect = 2.120e-66
Identity = 137/304 (45.07%), Postives = 181/304 (59.54%), Query Frame = 1
Query:    1 RMNARDA-SNLEGVGDLTA-AGVRLGNRTFNALKRDIRKKKEKGMSSG---GRVEGATRSTQEGVMDPRTRLLVFKMVNAGTLL-EVHGMVKTGKEAHVYHA--LAP--------------------------EDPETLT----GSRG--------VALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKAN------------------WRRCYAQVLELARLMFQKCHLVHADLSEYNVLYH 720
            R+NA +  S   GVGD+ A +G  + NR  N L++   K +    SSG   G +EG TR TQEGV+D RTRLL+ +++N G+L  EV G+VKTGKE++VY+A  + P                          E+ + L     G RG         A+KIFKTTL+EF NRAAY+DGDPR+G +RFNK+S +  F +WA+KE RNLLR+ +AGIPCP P+ Q+EH LV+SF+G D WP+PQLREV LS +                   W +CY  VL L R ++QK  LVH DLSEYN+L+H
Sbjct:  229 RLNALELMSRYSGVGDVEAESGFSIPNRASNQLRQRFNKDEVAKNSSGAAAGAMEGRTRQTQEGVLDARTRLLLLRILNKGSLFREVGGVVKTGKESNVYYAPGVGPRGREEDGEGWREDGSGERERKVEGRVEEDKVLVEREGGGRGGRKAKGCDCAIKIFKTTLNEFSNRAAYIDGDPRFGKLRFNKKSTRAKFQLWAEKEARNLLRMRKAGIPCPVPLLQKEHVLVMSFLGEDGWPSPQLREVRLSPSAASKGRGREGGEGGGARQWWEKCYRSVLMLVRDLYQKAGLVHGDLSEYNILWH 532          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: W7TIV6_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIV6_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.150e-61
Identity = 126/304 (41.45%), Postives = 167/304 (54.93%), Query Frame = 1
Query:   55 AGVRLGNRTFNALKRDIRKKKEKGMSSG---GRVEGATRSTQEGVMDPRTRLLVFKMVNAGTLL-EVHGMVKTGKEAHVYHA----------------------------------------------------------LAPEDPETLTGSRGV--ALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKAN------------------WRRCYAQVLELARLMFQKCHLVHADLSEYNVLYH 720
            +G  + NR  N L++   K +    SSG   G +EG TR TQEGV+D RTRLL+ +++N G+L  EV G+VKTGKE++VY+A                                                          L+    E++ G  G   A+KIFKTTL+EF NRAAY+DGDPR+G +RFNK+S +  F +WA+KE RNLLR+ +AGIPCP P+ Q+EH LV+SF+G D WP+PQLREV LS +                   W +CY  VL L R ++QK  LVH DLSEYN+L+H
Sbjct:  105 SGFSIPNRASNQLRQRFNKDEVAKNSSGAAAGAMEGRTRQTQEGVLDARTRLLLLRILNKGSLFREVGGVVKTGKESNVYYAPGVGPRGREEDGEGWREDGSGERERKVEGRVEEDKVLVEREGGRKGGEEGQRSVAGSALSGRKMESMEGIAGCDCAIKIFKTTLNEFSNRAAYIDGDPRFGKLRFNKKSTRAKFQLWAEKEARNLLRMRKAGIPCPVPLLQKEHVLVMSFLGEDGWPSPQLREVRLSPSAASKGRGREGGEGGGARQWWEKCYRSVLMLVRDLYQKAGLVHGDLSEYNILWH 408          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: A0A2P6N6M4_9EUKA (Non-specific serine/threonine protein kinase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N6M4_9EUKA)

HSP 1 Score: 204 bits (519), Expect = 5.880e-58
Identity = 104/225 (46.22%), Postives = 156/225 (69.33%), Query Frame = 1
Query:   61 VRLGNRTFNALKRDIRKKKEKGMSSGGRVEGATR--STQEGVMDPRTRLLVFKMVNAGTLLEVHGMVKTGKEAHVYHALAPEDPETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHEKV 729
            +R+ N  FN L++++R+++ +      RV G     +T+E VMDPRT+ +VFKM+N+G L E+HG+V  GKEA+VYHA+   D E +  +   A+KIFKT+++EF NRA Y++GD R+ N +    +R K+  +WA+KE RNL R+  AGI CPEPI  RE+ L++SFIG D +PAP+LR+V++    W+  Y  V++  R M+ +C LVHADLSEYN++Y ++V
Sbjct:  317 IRVSNPVFNNLRQNVRRQRTR----ANRVRGNKMDVATEEKVMDPRTKTIVFKMLNSGVLREIHGVVSAGKEANVYHAVTG-DYEGIESNVECAIKIFKTSMNEFKNRAEYLEGDYRFKNKKSQHNTR-KLIKLWAEKETRNLKRMRSAGIQCPEPILLRENILIMSFIGRDGFPAPRLRDVEVDTQVWKGIYHSVIKTMRKMYHQCKLVHADLSEYNLMYRKRV 535          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: A0A673FF05_9TELE (Non-specific serine/threonine protein kinase n=3 Tax=Cyprininae TaxID=2743694 RepID=A0A673FF05_9TELE)

HSP 1 Score: 193 bits (491), Expect = 2.430e-56
Identity = 103/229 (44.98%), Postives = 150/229 (65.50%), Query Frame = 1
Query:   37 VGDLTAAGVRLGNRTFNALKRDIRKKKEKGMSSGGRVEGATRSTQEGVMDPRTRLLVFKMVNAGTLLEVHGMVKTGKEAHVYHALAPEDPETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHE 723
            VGD     ++L N  +NALKR    ++ +   S    E    ST E  +DP+TRLL++KMVNAG L  ++G + TGKE+ V+HA      E +     V LK+FKTTL+EF NR  Y+  D R+ + RF+K + +K+  +WA+KE  NL R+ +AGIPCPE +  ++H LV+SFIG DH PAP+L++  LS  + ++ Y QVL + + ++Q C+LVHADLSEYN+L+H+
Sbjct:  159 VGDGIGMDLKLSNHVYNALKRHCYTEQRR---SARLHEKKEYSTAEHAVDPKTRLLMYKMVNAGILENINGCISTGKESVVFHANGGSFEEKIVPEECV-LKVFKTTLNEFKNRDKYIKDDYRFKD-RFSKLNPRKIIRLWAEKEMHNLTRMKKAGIPCPEVVILKKHILVMSFIGKDHVPAPKLKDATLSSEDMKKAYYQVLNMMQQLYQDCNLVHADLSEYNMLWHD 382          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: A0A673AYU0_9TELE (Non-specific serine/threonine protein kinase n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673AYU0_9TELE)

HSP 1 Score: 192 bits (489), Expect = 3.480e-56
Identity = 104/229 (45.41%), Postives = 149/229 (65.07%), Query Frame = 1
Query:   37 VGDLTAAGVRLGNRTFNALKRDIRKKKEKGMSSGGRVEGATRSTQEGVMDPRTRLLVFKMVNAGTLLEVHGMVKTGKEAHVYHALAPEDPETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHE 723
            VGD     ++L N+ FN+LK+    ++ +   S    E    ST E  +DPRTRLL++KMVNAG L  ++G + TGKE+ V+HA      E       V LK+FKTTL+EF NR  Y+  D R+ + RF+K + +K+  +WA+KE  NL R+ +A IPCPE +  ++H LV+SFIG DH PAP+L++  LS  + +  Y QVL L + ++Q+CHLVHADLSEYN+L+H+
Sbjct:  116 VGDGLGMDLKLSNQVFNSLKQHCYSEQRR---SARLHEKKEHSTAEQAVDPRTRLLMYKMVNAGVLENINGCISTGKESVVFHADGGSLDEQPVPEE-VVLKVFKTTLNEFKNRDRYIKDDYRFID-RFSKLNPRKVIRLWAEKEMHNLSRMKKAEIPCPEVVLLKKHILVMSFIGKDHVPAPKLKDAMLSSEDMKTAYHQVLHLMQQLYQECHLVHADLSEYNILWHQ 339          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: A0A8C4Z5Q2_GADMO (Serine/threonine-protein kinase RIO3 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4Z5Q2_GADMO)

HSP 1 Score: 195 bits (495), Expect = 4.320e-56
Identity = 105/232 (45.26%), Postives = 153/232 (65.95%), Query Frame = 1
Query:   37 VGDLTAAGVRLGNRTFNALKRDIRKKKEKGMSSGGRVEGATRSTQEGVMDPRTRLLVFKMVNAGTLLEVHGMVKTGKEAHVYHA---LAPEDPETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHE 723
            VGD     ++L N+ FN+LK+    ++ +      + E    ST E  +DPRTRLL++KMV+AGTL  ++G + TGKE+ V+HA   +  E P        V LK+FKTTL+EF NR  Y+  D R+ + RF+K + +K+  +WA+KE  NL R+ +AGIPCPE    R+H LVLSFIG DH PAP+L++  L  A+ +  Y QVL++ + ++Q+C+LVHADLSEYN+L+H+
Sbjct:  143 VGDGLGMDLKLSNQVFNSLKQHCHSEQRRSARLHDKKE---HSTAEQAVDPRTRLLMYKMVSAGTLERINGCISTGKESVVFHANGGMLEEQPVP----EEVVLKVFKTTLNEFKNRDRYIKDDYRFKD-RFSKLNPRKIIRLWAEKEMHNLARMKKAGIPCPEVALLRKHILVLSFIGKDHVPAPKLKDTMLGAADMKTAYYQVLQMMQQLYQECNLVHADLSEYNMLWHQ 366          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: A0A3B4A413_9GOBI (Serine/threonine-protein kinase RIO3 n=3 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4A413_9GOBI)

HSP 1 Score: 194 bits (494), Expect = 6.760e-56
Identity = 103/230 (44.78%), Postives = 154/230 (66.96%), Query Frame = 1
Query:   37 VGDLTAAGVRLGNRTFNALKRDIRKKKEKGMSSGGRV-EGATRSTQEGVMDPRTRLLVFKMVNAGTLLEVHGMVKTGKEAHVYHALAPEDPETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHE 723
            VGD     ++L N+ FN+LK+ +  ++ +      RV E    ST E  +DPRTRLL++KMVNAG L  ++G + TGKE+ V+HA      E    +  V LK+FKTTL+EF NR  Y+  D R+   RF+K + +K+  +WA+KE  NL RL RA +PCPE +  ++H LV+SFIGA+H PAP+L++  L++ + ++ Y QVL + + M+++C+LVHADLSEYN+L+H+
Sbjct:  149 VGDGLGMDLKLSNQVFNSLKQHVHSEQRR----SARVHEKKEHSTAEQAVDPRTRLLMYKMVNAGVLENINGCISTGKESVVFHANGGSLEEEPVPAE-VVLKVFKTTLNEFKNRDRYIKDDYRFKE-RFSKLNPRKVIRLWAEKEMHNLTRLRRAEVPCPEVVLLKKHILVMSFIGAEHIPAPKLKDAILNEDDMKKAYHQVLHMMKTMYEECNLVHADLSEYNLLWHQ 372          
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Match: A0A8C4ZZG3_GADMO (Serine/threonine-protein kinase RIO3 n=7 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZZG3_GADMO)

HSP 1 Score: 195 bits (495), Expect = 7.190e-56
Identity = 105/232 (45.26%), Postives = 153/232 (65.95%), Query Frame = 1
Query:   37 VGDLTAAGVRLGNRTFNALKRDIRKKKEKGMSSGGRVEGATRSTQEGVMDPRTRLLVFKMVNAGTLLEVHGMVKTGKEAHVYHA---LAPEDPETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFAIWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVDLSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHE 723
            VGD     ++L N+ FN+LK+    ++ +      + E    ST E  +DPRTRLL++KMV+AGTL  ++G + TGKE+ V+HA   +  E P        V LK+FKTTL+EF NR  Y+  D R+ + RF+K + +K+  +WA+KE  NL R+ +AGIPCPE    R+H LVLSFIG DH PAP+L++  L  A+ +  Y QVL++ + ++Q+C+LVHADLSEYN+L+H+
Sbjct:  167 VGDGLGMDLKLSNQVFNSLKQHCHSEQRRSARLHDKKE---HSTAEQAVDPRTRLLMYKMVSAGTLERINGCISTGKESVVFHANGGMLEEQPVP----EEVVLKVFKTTLNEFKNRDRYIKDDYRFKD-RFSKLNPRKIIRLWAEKEMHNLARMKKAGIPCPEVALLRKHILVLSFIGKDHVPAPKLKDTMLGAADMKTAYYQVLQMMQQLYQECNLVHADLSEYNMLWHQ 390          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13951.3136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFL7_9PHAE9.690e-15893.83Non-specific serine/threonine protein kinase n=1 T... [more]
D7FKT3_ECTSI3.430e-11595.35Non-specific serine/threonine protein kinase n=1 T... [more]
K8Z663_NANGC2.120e-6645.07Non-specific serine/threonine protein kinase n=2 T... [more]
W7TIV6_9STRA1.150e-6141.45Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2P6N6M4_9EUKA5.880e-5846.22Non-specific serine/threonine protein kinase n=1 T... [more]
A0A673FF05_9TELE2.430e-5644.98Non-specific serine/threonine protein kinase n=3 T... [more]
A0A673AYU0_9TELE3.480e-5645.41Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8C4Z5Q2_GADMO4.320e-5645.26Serine/threonine-protein kinase RIO3 n=1 Tax=Gadus... [more]
A0A3B4A413_9GOBI6.760e-5644.78Serine/threonine-protein kinase RIO3 n=3 Tax=Oxude... [more]
A0A8C4ZZG3_GADMO7.190e-5645.26Serine/threonine-protein kinase RIO3 n=7 Tax=Gadus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13951contigH-canaliculatus_F_contig13951:150..2697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.4
Seed ortholog evalue4.4e-92
Seed eggNOG ortholog2880.D7FKT3
KEGG koko:K07178
KEGG Pathwayko03008,map03008
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGsCOG1718@1,KOG2270@2759
EC2.7.11.1
COG Functional cat.DT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size729
Cds size726
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13951.3136.1prot_H-canaliculatus_F_contig13951.3136.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13951 153..2697 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.5080574-UTR-H-canaliculatus_F_contig13951:149..1521622929140.5080574-UTR-H-canaliculatus_F_contig13951:149..152Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13951 150..152 +
1696845692.665003-UTR-H-canaliculatus_F_contig13951:149..1521696845692.665003-UTR-H-canaliculatus_F_contig13951:149..152Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13951 150..152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929140.5259175-CDS-H-canaliculatus_F_contig13951:152..3891622929140.5259175-CDS-H-canaliculatus_F_contig13951:152..389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13951 153..389 +
1696845692.681004-CDS-H-canaliculatus_F_contig13951:152..3891696845692.681004-CDS-H-canaliculatus_F_contig13951:152..389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13951 153..389 +
1622929140.5752492-CDS-H-canaliculatus_F_contig13951:693..8571622929140.5752492-CDS-H-canaliculatus_F_contig13951:693..857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13951 694..857 +
1696845692.6892803-CDS-H-canaliculatus_F_contig13951:693..8571696845692.6892803-CDS-H-canaliculatus_F_contig13951:693..857Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13951 694..857 +
1622929140.5914817-CDS-H-canaliculatus_F_contig13951:1841..20631622929140.5914817-CDS-H-canaliculatus_F_contig13951:1841..2063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13951 1842..2063 +
1696845692.697347-CDS-H-canaliculatus_F_contig13951:1841..20631696845692.697347-CDS-H-canaliculatus_F_contig13951:1841..2063Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13951 1842..2063 +
1622929140.6129968-CDS-H-canaliculatus_F_contig13951:2594..26971622929140.6129968-CDS-H-canaliculatus_F_contig13951:2594..2697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13951 2595..2697 +
1696845692.706347-CDS-H-canaliculatus_F_contig13951:2594..26971696845692.706347-CDS-H-canaliculatus_F_contig13951:2594..2697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13951 2595..2697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13951.3136.1

>prot_H-canaliculatus_F_contig13951.3136.1 ID=prot_H-canaliculatus_F_contig13951.3136.1|Name=mRNA_H-canaliculatus_F_contig13951.3136.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=242bp
MNARDASNLEGVGDLTAAGVRLGNRTFNALKRDIRKKKEKGMSSGGRVEG
ATRSTQEGVMDPRTRLLVFKMVNAGTLLEVHGMVKTGKEAHVYHALAPED
PETLTGSRGVALKIFKTTLSEFGNRAAYVDGDPRYGNMRFNKQSRQKMFA
IWAKKEHRNLLRLFRAGIPCPEPIKQREHTLVLSFIGADHWPAPQLREVD
LSKANWRRCYAQVLELARLMFQKCHLVHADLSEYNVLYHEKV
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mRNA from alignment at H-canaliculatus_F_contig13951:150..2697+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13951.3136.1 ID=mRNA_H-canaliculatus_F_contig13951.3136.1|Name=mRNA_H-canaliculatus_F_contig13951.3136.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2548bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13951:150..2697+ (Hapterophycus canaliculatus Oshoro5f female)
AGGATGAATGCGCGAGACGCGTCGAACTTGGAGGGCGTTGGAGACCTTAC AGCGGCAGGGGTGCGCCTCGGCAACCGGACATTCAACGCCCTGAAGCGCG ACATCCGGAAGAAGAAGGAGAAGGGGATGTCGTCCGGGGGCAGGGTCGAG GGTGCGACACGGTCTACACAGGAGGGCGTCATGGATCCTCGTACCCGGCT GCTGGTGTTCAAGATGGTGAACGCCGGCACGCTTCTGGAGGTGAGTGCCT TGCTCCTTCATTCTGATGGTCTCGTTCGCGTGTTCCCGTGCAGACGGGCG GGAGACCCCGTTCTGATTTTGTTGCCTCCCCTCACGCCCATGTTTTCCGT TTCCCTTCAGGAGGGAAATATCGAAATGCCTGGTCGGTGGTTCTTGGGTA CCGCTGTCGTCGTCTCCGGAAGAGCCCAGCGCGCTTGCCGACTGTGCCGC CGCCTGCAAGGAGGCGTTACGTGACGTTCCAAATCGAGTCTGATCCTTCC GACAATGTCCCCCTCCCCCGCTGCCCCTTCCCTATGAACCGCAGGTCCAC GGAATGGTCAAGACAGGGAAGGAGGCGCACGTGTACCACGCTCTCGCACC CGAGGACCCAGAAACCTTGACTGGCAGCAGGGGTGTTGCTCTTAAGATCT TCAAGACCACCTTGAGCGAGTTTGGGAACCGAGCGGCGTACGTCGACGGG GACCCTCGGTGAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCTT TCCTCCCTCCTCTTTTTCCTGACTAAAAGAGAAAAAAAAACAAAGAAAGC GAAAGGAAAGAAGAAAANNNNNNNNNNACCCCCTTGAGGGGGTTGGGGAC CCGCGCGGCGTCCCCCGACGGGGGCCCCCGGGGGGCCCCCCCCCCCCCCC CCCATTGCCGTGTCCATTGTGTTTGCTTTCGTCGAATGGTGCCAGAGTTG GCGAGAAAGTCAAGAGTAGCAGCCGAGGTAAACAAGTGCGCGGGAGTCTT TTCGTGCAAGTGTACGAACACGAGCCCTGCGGGATTGAACTGTGATGGAA CTGGGAACGGTCCTCAATTTCGGAAGGTTTGCAGCCGTGCTCAGTTGTTT GTCAAAGCACGAGAGCAAGGCACGCAATATCGTGAGTGCGCCGCCTTACC CTCCCCCCACCCACGCGCACGCAAGCCCATGAACGCCGCTTGCCGTTGTT GCTTCAAATGCGTCAATCTTGTACGTTTCCGAGCAAGTTGCGGCATGAGG AAGACGACCGTGATTACTCCGTCTCGAGCGAAATCGCTGTCAGTCTTGTG GGGCAATCACGAACGTTGCTCTCTCAGTTGTGTTCTGCTGTTTTCTGTTG GCTGCGGCTTGTGCGCGGTCTCTGGTCCTCGCCGTGATCTTTTACATTTG GGCTCAACTTCACTCCCGGTGGATATGTTCGACAGGACCAAAAATGAACA TCTGCTGCGAATCGAGCCATCAGATCTACACGAGCCAAGTCTTTTTTGAA AAGCACACTTGGATCACTTCAAGCAAGAAACGTGTCAGGCGTCGCGTCCG CTGCCTCATCTGGTCTGCCACACCTCCAAATCGGCTGCGCGGAAGCAGAA AAGACGAAGGAAGCGCAACAAGCGTACCACGCGACTCGTCCGAAATTCCC AACGACAGCCCGTCCGGTCCGGCGCCCCGCCCTCGAATTCAGATACGGCA ACATGAGGTTCAACAAGCAAAGCCGGCAGAAGATGTTCGCGATCTGGGCC AAGAAGGAGCACCGCAATCTCCTCCGCCTCTTCCGCGCCGGCATCCCCTG CCCGGAGCCGATCAAGCAGCGCGAACACACCCTCGTCCTGTCCTTCATCG GCGCCGACCACTGGCCCGCCCCGCAGCTCAGGGAGGTCGACCTTTCCAAG GCGAACTGGCGCAGGTGTGTCTGAGGGCTCCAATGGTAGAGGAAGTCGGC GCGCGCCGGGCGGGTCGTTGCTGTCGTGCACCGCTGTATGATGCTGTAAG TTGTTAGGCACCCTTCCGGCCCCGAAACACGGACAAGGTCTTTCGGAATG CATTTGTTTGCCGACATACCCCCAGTGTGAGTGGGCTTGTGTGCAGACGA GCGACGATTGGATCGAGAGAGGCGGGCTGCAAAGCTTGGTTCGACGAGAA GCAGGTTGCGGTCCATAGAAGCTGTGGAATTATGCCATGTCATATCATGC CATGTCGTGCCATGTCATGTCATGCCATGTCATGCCATGCCGGGTCAGGC TCTCCTTCGCCGCCACGCGGGTTAGACGCGCCCGCCCTACTGTACTTTAT GCCCGAAAGCTCCTTGCCGCCTTTGCTGCCCCCCCTCCCCTTCCCGGGGA ACTCCTTTCTCACATTCCGCAACGGCTCACTTCATATCCGTTTCTGCCTG TCCCTCCCCCTGTCTCGCCATCTCGCCATCTCGCCATCTCGATAGATGCT ACGCGCAGGTGCTGGAGCTAGCTCGCCTGATGTTTCAGAAGTGCCACCTT GTGCACGCAGACCTCTCCGAGTACAACGTGCTCTACCACGAAAAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13951:150..2697+

>mRNA_H-canaliculatus_F_contig13951.3136.1 ID=mRNA_H-canaliculatus_F_contig13951.3136.1|Name=mRNA_H-canaliculatus_F_contig13951.3136.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1452bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13951:150..2697+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAATGCGCGAGACGCGTCGAACTTGGAGGGCGTTGGAGACCTTACAGC
GGCAGGGGTGCGCCTCGGCAACCGGACATTCAACGCCCTGAAGCGCGACA
TCCGGAAGAAGAAGGAGAAGGGGATGTCGTCCGGGGGCAGGGTCGAGGGT
GCGACACGGTCTACACAGGAGGGCGTCATGGATCCTCGTACCCGGCTGCT
GGTGTTCAAGATGGTGAACGCCGGCACGCTTCTGGAGATGAATGCGCGAG
ACGCGTCGAACTTGGAGGGCGTTGGAGACCTTACAGCGGCAGGGGTGCGC
CTCGGCAACCGGACATTCAACGCCCTGAAGCGCGACATCCGGAAGAAGAA
GGAGAAGGGGATGTCGTCCGGGGGCAGGGTCGAGGGTGCGACACGGTCTA
CACAGGAGGGCGTCATGGATCCTCGTACCCGGCTGCTGGTGTTCAAGATG
GTGAACGCCGGCACGCTTCTGGAGGTCCACGGAATGGTCAAGACAGGGAA
GGAGGCGCACGTGTACCACGCTCTCGCACCCGAGGACCCAGAAACCTTGA
CTGGCAGCAGGGGTGTTGCTCTTAAGATCTTCAAGACCACCTTGAGCGAG
TTTGGGAACCGAGCGGCGTACGTCGACGGGGACCCTCGGTCCACGGAATG
GTCAAGACAGGGAAGGAGGCGCACGTGTACCACGCTCTCGCACCCGAGGA
CCCAGAAACCTTGACTGGCAGCAGGGGTGTTGCTCTTAAGATCTTCAAGA
CCACCTTGAGCGAGTTTGGGAACCGAGCGGCGTACGTCGACGGGGACCCT
CGATACGGCAACATGAGGTTCAACAAGCAAAGCCGGCAGAAGATGTTCGC
GATCTGGGCCAAGAAGGAGCACCGCAATCTCCTCCGCCTCTTCCGCGCCG
GCATCCCCTGCCCGGAGCCGATCAAGCAGCGCGAACACACCCTCGTCCTG
TCCTTCATCGGCGCCGACCACTGGCCCGCCCCGCAGCTCAGGGAGGTCGA
CCTTTCCAAGGCGAACTGGCGCAGATACGGCAACATGAGGTTCAACAAGC
AAAGCCGGCAGAAGATGTTCGCGATCTGGGCCAAGAAGGAGCACCGCAAT
CTCCTCCGCCTCTTCCGCGCCGGCATCCCCTGCCCGGAGCCGATCAAGCA
GCGCGAACACACCCTCGTCCTGTCCTTCATCGGCGCCGACCACTGGCCCG
CCCCGCAGCTCAGGGAGGTCGACCTTTCCAAGGCGAACTGGCGCAGATGC
TACGCGCAGGTGCTGGAGCTAGCTCGCCTGATGTTTCAGAAGTGCCACCT
TGTGCACGCAGACCTCTCCGAGTACAACGTGCTCTACCACGAAAAGGTGA
TGCTACGCGCAGGTGCTGGAGCTAGCTCGCCTGATGTTTCAGAAGTGCCA
CCTTGTGCACGCAGACCTCTCCGAGTACAACGTGCTCTACCACGAAAAGG
TG
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