mRNA_H-canaliculatus_F_contig1395.3135.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1395.3135.1 vs. uniprot
Match: D7FJZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ8_ECTSI) HSP 1 Score: 350 bits (897), Expect = 3.680e-111 Identity = 158/223 (70.85%), Postives = 190/223 (85.20%), Query Frame = 1
Query: 898 LTDNELLAKHYPRYFYDKDEKIFPVDLNKYTLDRSAVEGCNGVAAPSKDGKHTWLIYMNYYLFDGGISKLGGTGGHKYDLEIVVVEIGNETQDVTGVFYGPHSSFEHMWIRHDDDLKSILDSEGRPKVYISLGKHASYPVSGRVRRLFGLGTDSCQKPRLQERPLCILDEYARGVDRIDGAFSGPKKRITRDWSVAPETRVKDVAFRRAVPPAAQVRKELSKL 1566
LTD+ELL KH+PRYFYD+ E +FP+DLN+YT+D+S V+GCNGVA PSKDG++TWLIYMNYYLFDGG+++LGG G HKYDLEIV+VEI N Q+V+GVFYGPHS EHMWIR+ DD+K ILD GRP+VY+SLGKHASYP+ G+V RLFG GTD+C+ PR ++RPL ILD R VD+IDG F+GPK+RI RDWSVAP R+KDV R AVPPAAQV+KELSKL
Sbjct: 42 LTDDELLVKHFPRYFYDEKETLFPIDLNRYTVDKSEVDGCNGVATPSKDGENTWLIYMNYYLFDGGVARLGGLGDHKYDLEIVIVEI-NRHQNVSGVFYGPHSGHEHMWIRNKDDVKEILDETGRPRVYVSLGKHASYPLPGKVTRLFGFGTDNCENPRPRDRPLFILDHQTRRVDKIDGEFAGPKRRIRRDWSVAPAVRIKDVPRRMAVPPAAQVQKELSKL 263
BLAST of mRNA_H-canaliculatus_F_contig1395.3135.1 vs. uniprot
Match: A0A836CG74_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG74_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.700e-29 Identity = 80/191 (41.88%), Postives = 106/191 (55.50%), Query Frame = 1
Query: 907 NELLAKHYPRYFYDKDEKIFPVDLNKYTLDRSAVEGCNGVAAPSKDGKHTWLIYMNYYLF---DGGISKLG--GTGGHKYDLEIVVVEIGNETQDVTGVFYGPHSSFEHMWIRHDDDLKSILDSEGRPKVYISLGKHASYPVSGRVRRLFGLGTDSCQKPRLQERPLCILDEYARGVDRIDGAFSGPKKRI 1464
N LL KH P Y+ +E PV+L Y RSA+ + + T ++Y+LF D G+S G G GGH YD+E VV+E+G + +V VFY PHS+ EH + + DL IL RP+VY+S GKHA YPV G VRR GL D+C+ P QE + +LD+ R I G F G KKR+
Sbjct: 7 NALLVKHTPVYYTACNEAEEPVNLTTYM--RSALCEKDKTVSGVCQLLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADA-NVKAVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSI-GTFEGIKKRL 193
BLAST of mRNA_H-canaliculatus_F_contig1395.3135.1 vs. uniprot
Match: A0A835ZFI2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI2_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.560e-14 Identity = 67/206 (32.52%), Postives = 94/206 (45.63%), Query Frame = 1
Query: 913 LLAKHYPRYFYDKDEKIFPVDLNKYTLDRSAVEG--CNGVAAPSKDGKHTWLIYMNYYLFDGGISKLGGT-GGHKYDLEIVVVEIGNETQDVTGVFYGPHSSFEHMWIRHDDDLKSILDSEGRPKVYISLGKHASYPVSGRVRRLFGLGTDSCQKP-RLQERPLCILDEYARGVDRIDGAFSGPKKRITRDWSVAPETRVKDVAFR 1518
LLA+H P Y +D E P+ L +Y ++ + GV + +G T L Y + DGG G H +D+E V V + E V V++ PHSS E + +D K + D GRP VYIS GKHASYPV+ R L L D C KP + + L + G+ +R+ RD P + V+ R
Sbjct: 1 LLAEHCPIYNFDYREADLPMSLEEYVATKNFLRSDVVTGVVKAAANGD-TALHYFLFVERDGGTIVDGKVFDAHPFDIEQVTVRV-TEDGVVNAVYFYPHSSVESFAVTGNDVEKVLKD--GRPLVYISYGKHASYPVTHVARYL--LAGDECLKPVKFDMKALQASSAVMKAAGF--GSILPLSRRVVRDLETIPVVLLSKVSTR 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1395.3135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1395.3135.1 >prot_H-canaliculatus_F_contig1395.3135.1 ID=prot_H-canaliculatus_F_contig1395.3135.1|Name=mRNA_H-canaliculatus_F_contig1395.3135.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=264bp MSDPAVSGSAAAPAVVSKAEGSAQEEAPKHASRVAHLTDNELLAKHYPRYback to top mRNA from alignment at H-canaliculatus_F_contig1395:12131..19025- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1395.3135.1 ID=mRNA_H-canaliculatus_F_contig1395.3135.1|Name=mRNA_H-canaliculatus_F_contig1395.3135.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6895bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1395:12131..19025- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1395:12131..19025- >mRNA_H-canaliculatus_F_contig1395.3135.1 ID=mRNA_H-canaliculatus_F_contig1395.3135.1|Name=mRNA_H-canaliculatus_F_contig1395.3135.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1584bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1395:12131..19025- (Hapterophycus canaliculatus Oshoro5f female)back to top |