mRNA_H-canaliculatus_F_contig1393.3122.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1393.3122.1
Unique NamemRNA_H-canaliculatus_F_contig1393.3122.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1393.3122.1 vs. uniprot
Match: A0A6H5KXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.350e-18
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  499 TAEMREERLAAGSAFGSMDQNSGRVSARRLEELLALLGTPSATRSGDATRSARSWGLLSAPSFSREDFVTW 711
            +AE+ EERLAA  AF SMDQNSGRVSARRLEELL LLG P+A R   AT SAR+ GLLSAPSFS ++FV W
Sbjct:   40 SAEVLEERLAAERAFSSMDQNSGRVSARRLEELLTLLGMPAAQRGAKATESARAAGLLSAPSFSCQEFVDW 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1393.3122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXR2_9PHAE6.350e-1871.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1393contigH-canaliculatus_F_contig1393:319..2443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_010370.1
Exons2
Model size714
Cds size714
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.327345-CDS-H-canaliculatus_F_contig1393:318..9361622929138.327345-CDS-H-canaliculatus_F_contig1393:318..936Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 319..936 -
1696845691.8463285-CDS-H-canaliculatus_F_contig1393:318..9361696845691.8463285-CDS-H-canaliculatus_F_contig1393:318..936Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 319..936 -
1622929138.350844-CDS-H-canaliculatus_F_contig1393:2347..24431622929138.350844-CDS-H-canaliculatus_F_contig1393:2347..2443Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 2348..2443 -
1696845691.8544607-CDS-H-canaliculatus_F_contig1393:2347..24431696845691.8544607-CDS-H-canaliculatus_F_contig1393:2347..2443Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1393 2348..2443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1393.3122.1prot_H-canaliculatus_F_contig1393.3122.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1393 319..2443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1393.3122.1

>prot_H-canaliculatus_F_contig1393.3122.1 ID=prot_H-canaliculatus_F_contig1393.3122.1|Name=mRNA_H-canaliculatus_F_contig1393.3122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=238bp
MEGVGQRLERMGLSGVTMEQLSDVEWKLGEIKFGGDNSDDDVETTGMRLG
GLHFGASPDKSKQSQAKSSPSVPPIPAPSRGRAGTPQAQAAGGGGGNGVV
QNGSGVSSASAVATENSGVPPPSSRPPWGWGAAAASGDETGVSASVNHTA
ESTIDETAAAAAGEGETAEMREERLAAGSAFGSMDQNSGRVSARRLEELL
ALLGTPSATRSGDATRSARSWGLLSAPSFSREDFVTW*
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mRNA from alignment at H-canaliculatus_F_contig1393:319..2443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1393.3122.1 ID=mRNA_H-canaliculatus_F_contig1393.3122.1|Name=mRNA_H-canaliculatus_F_contig1393.3122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2125bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1393:319..2443- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGGTGTGGGACAGCGGCTGGAAAGAATGGGTCTCAGTGGCGTGAC
TATGGAGCAGCTCTCCGACGTGGAGTGGAAGCTTGGCGAGATAAAGGTGA
ATCCACGGAAGGTTGTTGAAAATCGCAAGGAGCGCGATCCCCTCGTGCAC
TGGTTCCCTCAGAGAAAATCAAACTGGACGTTGTTTGACGTCGATACAGG
AGGTGATGCGATGTCGCCCTTCGTCTCATTGTACCCCATATGCGGCGGGT
TGCCCCCCCCCCTCATTGGAACATCCAAACCTCAATCTTGCTGCCTTTCA
TGTTTATCATCCATTTTTCGTTTCAGACGTCGTCTCCATACAATTGTAGG
CTGCCTCTAGTTTTTAGTTTGGAGGCGGTGTGGGACTTGGGTCGGCACCT
CTTGGGTCTCTGAATAGTCTACGGCAATACCTCGTACTGTGGAGTCCCCG
CTCCTACCGCATGGTTGACCCCGAGGTATTATGCATCGGCGCGCGCTCCT
GACTTCGTGAGTTTTGCACGGCAAGGTGGTGGCGGTGAGATCCTTCGTCC
ATTGATGCCATCCGATCCGCAGTATCTCGGCGGCTTTTCCCCGGAGCGTA
CAGGAATGTCCGTGGATCCCACGGCGATGCTTTGTTTGTTAAATTAGACC
CCATGTGGTTGTTTGCTGCCGTTTGGTTACCTTCGGTTTCCTTGTTCATC
CGGAGAAGGAAGAGACATTTCGTACGCACACGCACATATTAACACACACA
CACACACACACACACACACACGCCCCCGAACACCGTGTACACCTCCCAGA
GCAAGTGTTTTGTCCACCTTCTCGAAAAATCAACCTTCAATATTCCGATC
AGGCTGAGGGGACAGAGCCAGACGGTGCGGCAGGCGGCACGTGTTTTCGA
GACCAAAGGGGGCTCTAGGCCACAGGCGGAAAGCCGCAGAGCACGAGGTT
GAGCAAGGAGTGCCTTCATAAGTCTAAGGGTACCACTGTTTTACTTTTCT
TTAAGGAGGAGTTCAGCAACTGGTTTCCGAAACGAAATTAATGCTCCGCA
CGGCCCGTTGGAGTCGCTGCTGAATTTCGCTTTCGCCGTTTGTCACGGCT
TGTCCGCAGAAGAACATGCGCGCGAGATATCTCTCTGCACCTAGATGTGC
GGTATCGATCCCCGAGTGTGTGTGCGCGATAAGCTGTAACCGCTATGTCG
CACCGTGTAACCGCTATGTCGCACCGCCGAGAGCTTCAACGGCATACATC
CGCTTTCTTTGTAGCGGCAGCTCCCGTCCTTTCTGGCGAGGCATGTCCCT
CGAGAGCGAACCGCTCGCACCATGCCAACCAGCGACGACCCTACGACAGC
AGCAGTACATATACGCAGATACGTGACGGTACTTTTTTAAGCAACCGTTG
TGGCCACACTCTTCCCGTCTGCCGTACCCCATCACAAAACGCGTGACTTG
CTCTTGCTCCACCGCGCCGCTGCCCTGGCGTCTCTTTTCTTACGCTTGCC
AATGCAGTTCGGGGGGGATAACAGCGATGACGACGTAGAAACTACTGGCA
TGCGTCTGGGAGGCTTGCACTTCGGGGCGTCCCCTGACAAATCCAAGCAA
TCGCAGGCCAAGTCTTCGCCGTCGGTTCCCCCCATCCCGGCCCCGTCAAG
AGGCCGTGCCGGAACCCCGCAAGCCCAGGCTGCCGGCGGCGGCGGCGGTA
ACGGTGTCGTGCAAAACGGCAGCGGCGTGTCGAGCGCTAGTGCTGTCGCA
ACCGAAAACAGTGGCGTTCCGCCCCCCTCGTCGAGGCCTCCCTGGGGCTG
GGGGGCAGCAGCGGCTTCGGGGGACGAAACGGGTGTCTCCGCCTCGGTGA
ACCATACAGCGGAGTCAACCATTGACGAAACGGCAGCAGCAGCAGCAGGA
GAAGGAGAGACCGCGGAGATGCGGGAGGAGCGGCTGGCGGCAGGGAGCGC
GTTCGGTAGCATGGATCAAAACTCCGGAAGGGTTTCGGCCCGCCGCTTGG
AGGAGCTACTGGCTTTGTTGGGGACACCGTCGGCCACAAGGAGCGGGGAC
GCGACCCGATCCGCCAGGTCGTGGGGGCTGCTGAGTGCGCCCTCCTTCTC
GCGCGAGGACTTCGTTACGTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1393:319..2443-

>mRNA_H-canaliculatus_F_contig1393.3122.1 ID=mRNA_H-canaliculatus_F_contig1393.3122.1|Name=mRNA_H-canaliculatus_F_contig1393.3122.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1428bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1393:319..2443- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGGTGTGGGACAGCGGCTGGAAAGAATGGGTCTCAGTGGCGTGAC
TATGGAGCAGCTCTCCGACGTGGAGTGGAAGCTTGGCGAGATAAAGATGG
AAGGTGTGGGACAGCGGCTGGAAAGAATGGGTCTCAGTGGCGTGACTATG
GAGCAGCTCTCCGACGTGGAGTGGAAGCTTGGCGAGATAAAGTTCGGGGG
GGATAACAGCGATGACGACGTAGAAACTACTGGCATGCGTCTGGGAGGCT
TGCACTTCGGGGCGTCCCCTGACAAATCCAAGCAATCGCAGGCCAAGTCT
TCGCCGTCGGTTCCCCCCATCCCGGCCCCGTCAAGAGGCCGTGCCGGAAC
CCCGCAAGCCCAGGCTGCCGGCGGCGGCGGCGGTAACGGTGTCGTGCAAA
ACGGCAGCGGCGTGTCGAGCGCTAGTGCTGTCGCAACCGAAAACAGTGGC
GTTCCGCCCCCCTCGTCGAGGCCTCCCTGGGGCTGGGGGGCAGCAGCGGC
TTCGGGGGACGAAACGGGTGTCTCCGCCTCGGTGAACCATACAGCGGAGT
CAACCATTGACGAAACGGCAGCAGCAGCAGCAGGAGAAGGAGAGACCGCG
GAGATGCGGGAGGAGCGGCTGGCGGCAGGGAGCGCGTTCGGTAGCATGGA
TCAAAACTCCGGAAGGGTTTCGGCCCGCCGCTTGGAGGAGCTACTGGCTT
TGTTGGGGACACCGTCGGCCACAAGGAGCGGGGACGCGACCCGATCCGCC
AGGTCGTGGGGGCTGCTGAGTGCGCCCTCCTTCTCGCGCGAGGACTTCGT
TACGTGGTGATTCGGGGGGGATAACAGCGATGACGACGTAGAAACTACTG
GCATGCGTCTGGGAGGCTTGCACTTCGGGGCGTCCCCTGACAAATCCAAG
CAATCGCAGGCCAAGTCTTCGCCGTCGGTTCCCCCCATCCCGGCCCCGTC
AAGAGGCCGTGCCGGAACCCCGCAAGCCCAGGCTGCCGGCGGCGGCGGCG
GTAACGGTGTCGTGCAAAACGGCAGCGGCGTGTCGAGCGCTAGTGCTGTC
GCAACCGAAAACAGTGGCGTTCCGCCCCCCTCGTCGAGGCCTCCCTGGGG
CTGGGGGGCAGCAGCGGCTTCGGGGGACGAAACGGGTGTCTCCGCCTCGG
TGAACCATACAGCGGAGTCAACCATTGACGAAACGGCAGCAGCAGCAGCA
GGAGAAGGAGAGACCGCGGAGATGCGGGAGGAGCGGCTGGCGGCAGGGAG
CGCGTTCGGTAGCATGGATCAAAACTCCGGAAGGGTTTCGGCCCGCCGCT
TGGAGGAGCTACTGGCTTTGTTGGGGACACCGTCGGCCACAAGGAGCGGG
GACGCGACCCGATCCGCCAGGTCGTGGGGGCTGCTGAGTGCGCCCTCCTT
CTCGCGCGAGGACTTCGTTACGTGGTGA
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