mRNA_H-canaliculatus_F_contig13923.3117.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13923.3117.1
Unique NamemRNA_H-canaliculatus_F_contig13923.3117.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: D7FLK6_ECTSI (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK6_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.550e-39
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQDWDMFQTNLGEASWMHAAARAVSGGPVYISDRPG 210
            VIRGSDDFYPRDK SH PHIYANAFNSLMIS+CGLQDWDMFQTN+G+ASWMHAA+RAVSGGPVYISDRPG
Sbjct:  260 VIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 329
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BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: A0A6H5JFU4_9PHAE (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.120e-39
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQDWDMFQTNLGEASWMHAAARAVSGGPVYISDRPG 210
            VIRGSDDFYPRDK SH PHIYANAFNSLMIS+CGLQDWDMFQTN+G+ASWMHAA+RAVSGGPVYISDRPG
Sbjct:  605 VIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 674
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BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: A0A836CF54_9STRA (Raffinose synthase or seed imbibition protein Sip1-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF54_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.070e-34
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCG-LQDWDMFQTNLGEASWMHAAARAVSGGPVYISDRPG 210
            ++RGSDDFYPRD ASHG HIYANAFN+L++++CG LQDWDMFQT+LG    MHAAARA+SGGPVYISDRPG
Sbjct:    3 IVRGSDDFYPRDPASHGTHIYANAFNALLLAHCGTLQDWDMFQTSLGAVGAMHAAARAISGGPVYISDRPG 73
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BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: A0A7S3Y1T0_HETAK (Galactinol--sucrose galactosyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1T0_HETAK)

HSP 1 Score: 125 bits (313), Expect = 8.470e-32
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQDWDMFQTNLGEASWMHAAARAVSGGPVYISDRPG 210
            ++RGSDD YPRD ASHGPH+Y NAFN+L++S  GLQDWDMFQT LG  SW+H AARAVSGGPVY+SDRPG
Sbjct:  287 LVRGSDDHYPRDPASHGPHLYFNAFNALLVSFVGLQDWDMFQTALGPGSWLHGAARAVSGGPVYVSDRPG 356
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BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: A0A836CJ91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ91_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.490e-31
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCG-LQDWDMFQTNLGEASWMHAAARAVSGGPVYISDRPG 210
            ++RGSDDFYPRD ASHG HIYANAFN+L+++ CG LQDWDMFQT+LG    MHAAARA+SGGPVYISDRPG
Sbjct:  192 IVRGSDDFYPRDPASHGTHIYANAFNALLLAYCGALQDWDMFQTSLGAVGAMHAAARAISGGPVYISDRPG 262
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BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: A0A835YGP5_9STRA (Galactinol--sucrose galactosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGP5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.730e-31
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQ----------------DWDMFQTNLGEASWMHAAARAVSGGPVYISDRPG 210
            +IRGSDDFYPRD+ASHG H+Y+NAFN+L+I +CGLQ                DWDMFQT LG  SWMHAA+RA+SGGPVYISDRPG
Sbjct:  695 LIRGSDDFYPRDEASHGSHLYSNAFNALLIGHCGLQAKALDGFTHHALAGLRDWDMFQTTLGPVSWMHAASRAISGGPVYISDRPG 780
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BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: D8LQ35_ECTSI (Galactinol--sucrose galactosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ35_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.680e-30
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQDWDMFQTNLG-----------------EASWMHAAARAVSGGPVYISDRPG 210
            VIRGSDDFYPR+  SHGPH+Y+N+FN+L++SN G+QDWDMFQT LG                  ASW HAAARA+SGGPVY+SDRPG
Sbjct:  477 VIRGSDDFYPREDLSHGPHLYSNSFNALLLSNLGVQDWDMFQTGLGVQGTGDAAGAAGLSEGANASWFHAAARAISGGPVYVSDRPG 563
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BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: A0A7S1UEC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEC9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.140e-23
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQDWDMFQTNL-----------GEAS---WMHAAARAVSGGPVYISDRPG 210
            ++RGSDDFYP   ASH  H++ANAFNSL++   G  DWDMFQ+ L            +AS   W+HAAARAVSGGPVY+SDRPG
Sbjct:  166 LLRGSDDFYPTQPASHAAHVHANAFNSLLLGMLGQVDWDMFQSILPAQEDPNAGGGADASRWAWLHAAARAVSGGPVYLSDRPG 249
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: A0A2P6VS05_9CHLO (Galactinol--sucrose galactosyltransferase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VS05_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 7.770e-20
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQDWDMFQTNLGEASWMHAAARAVSGGPVYISDRPG 210
            V R SDDFYP D+ASH PH+ A AFN+L +S   L DWDMF +    A  +HAAARAVSGGPVY+SD PG
Sbjct:  495 VARASDDFYPTDRASHIPHLAACAFNALFLSPLALPDWDMFSSRHVAAD-IHAAARAVSGGPVYVSDAPG 563
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Match: A0A2P6TW59_CHLSO (Galactinol--sucrose galactosyltransferase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TW59_CHLSO)

HSP 1 Score: 90.9 bits (224), Expect = 1.060e-19
Identity = 44/70 (62.86%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQDWDMFQTNLGEASWMHAAARAVSGGPVYISDRPG 210
            V R SDDFYP D+ASH PH+ A AFN L +S   L DWDMF +    A  +HAAARAVSGGPVY+SD PG
Sbjct:  461 VARASDDFYPTDRASHIPHLAACAFNGLFLSPLALPDWDMFSSRHVAAD-IHAAARAVSGGPVYVSDAPG 529
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13923.3117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK6_ECTSI1.550e-3991.43Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A6H5JFU4_9PHAE5.120e-3991.43Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A836CF54_9STRA2.070e-3477.46Raffinose synthase or seed imbibition protein Sip1... [more]
A0A7S3Y1T0_HETAK8.470e-3275.71Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A836CJ91_9STRA1.490e-3177.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGP5_9STRA4.730e-3165.12Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
D8LQ35_ECTSI5.680e-3062.07Galactinol--sucrose galactosyltransferase n=2 Tax=... [more]
A0A7S1UEC9_9STRA1.140e-2357.14Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2P6VS05_9CHLO7.770e-2062.86Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A2P6TW59_CHLSO1.060e-1962.86Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13923contigH-canaliculatus_F_contig13923:1316..2067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue5.2e-33
Seed eggNOG ortholog2880.D7FLK6
Preferred nameAGA1
KEGG rclassRC00049,RC00059
KEGG koko:K06617
KEGG ReactionR02411
KEGG Pathwayko00052,map00052
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004557,GO:0005575,GO:0005911,GO:0005975,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009506,GO:0009628,GO:0015925,GO:0016052,GO:0016787,GO:0016798,GO:0030054,GO:0033530,GO:0034484,GO:0044238,GO:0050896,GO:0052692,GO:0055044,GO:0071704,GO:0080167,GO:1901575
EggNOG free text desc.galactinol-sucrose galactosyltransferase activity
EggNOG OGs2CC3R@1,2QPVE@2759
EC2.4.1.82
COG Functional cat.S
CAZyGH36
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929138.0271432-CDS-H-canaliculatus_F_contig13923:1315..14231622929138.0271432-CDS-H-canaliculatus_F_contig13923:1315..1423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13923 1316..1423 +
1696845691.7289166-CDS-H-canaliculatus_F_contig13923:1315..14231696845691.7289166-CDS-H-canaliculatus_F_contig13923:1315..1423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13923 1316..1423 +
1622929138.0486093-CDS-H-canaliculatus_F_contig13923:1962..20671622929138.0486093-CDS-H-canaliculatus_F_contig13923:1962..2067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13923 1963..2067 +
1696845691.7461474-CDS-H-canaliculatus_F_contig13923:1962..20671696845691.7461474-CDS-H-canaliculatus_F_contig13923:1962..2067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13923 1963..2067 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13923.3117.1prot_H-canaliculatus_F_contig13923.3117.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13923 1316..2067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13923.3117.1

>prot_H-canaliculatus_F_contig13923.3117.1 ID=prot_H-canaliculatus_F_contig13923.3117.1|Name=mRNA_H-canaliculatus_F_contig13923.3117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=71bp
VIRGSDDFYPRDKASHGPHIYANAFNSLMISNCGLQDWDMFQTNLGEASW
MHAAARAVSGGPVYISDRPG*
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mRNA from alignment at H-canaliculatus_F_contig13923:1316..2067+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13923.3117.1 ID=mRNA_H-canaliculatus_F_contig13923.3117.1|Name=mRNA_H-canaliculatus_F_contig13923.3117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=752bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13923:1316..2067+ (Hapterophycus canaliculatus Oshoro5f female)
GTGATCCGAGGGTCGGACGATTTCTACCCCCGAGACAAGGCTAGCCACGG
CCCTCACATCTACGCCAACGCGTTCAACAGCCTCATGATCAGCAACTGCG
GTCTGCAGGTGCCGCTGCGGCCGTTGTCCGTGTGTTCGGCTGCTCATCGC
GGAGCGATTGGTCGCTGCCGGTGCTCTTTCGCCTTGTCTTGCGTCGGCGG
TGGTGGTAGTGGTAGCGGTGGCGGTAGTAGCGGTGAGGACGAGGTCTTGA
GGGGGCGTCCGTGTTGCAACGACGCCGATGCGCTCAAACGAACGGTGGAA
AACCTGCGCGAATGTTAGCGTTTTGGCGCGTGGTCGCTTGAACGGCATTC
TTTTTACGGCAAGTGTTTCCCAGTTTTCGCGCGGGCTCTCCGTGCTCCTT
TCGTTTGTCCTTTTTGTCCTTACGGCAACCACACCTACCCCCGCTCCTCG
ACCCCCTGCCATCGGAGTTTATGGCGAGTTGCTCCGCGATCCAGTGCTTA
CCCGCCGAACCGAGGCTGTGCCCCTTTTGAGGTCTCCGGTACCGGCAGAC
ACATGAGTCGCTGACAACGGCTGATTACCCGGTTGCTGAATTCCTCTGCT
CTCCCTGATTTTGCGTTGCGATATCTCTCCTTTCCTCCCTCCACAAGGAC
TGGGATATGTTCCAGACGAACCTCGGCGAGGCGAGTTGGATGCACGCAGC
GGCAAGAGCGGTCAGTGGCGGACCGGTGTACATCAGCGACAGACCAGGGT
AA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13923:1316..2067+

>mRNA_H-canaliculatus_F_contig13923.3117.1 ID=mRNA_H-canaliculatus_F_contig13923.3117.1|Name=mRNA_H-canaliculatus_F_contig13923.3117.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=426bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13923:1316..2067+ (Hapterophycus canaliculatus Oshoro5f female)
GTGATCCGAGGGTCGGACGATTTCTACCCCCGAGACAAGGCTAGCCACGG
CCCTCACATCTACGCCAACGCGTTCAACAGCCTCATGATCAGCAACTGCG
GTCTGCAGGTGATCCGAGGGTCGGACGATTTCTACCCCCGAGACAAGGCT
AGCCACGGCCCTCACATCTACGCCAACGCGTTCAACAGCCTCATGATCAG
CAACTGCGGTCTGCAGGACTGGGATATGTTCCAGACGAACCTCGGCGAGG
CGAGTTGGATGCACGCAGCGGCAAGAGCGGTCAGTGGCGGACCGGTGTAC
ATCAGCGACAGACCAGGGTAAGACTGGGATATGTTCCAGACGAACCTCGG
CGAGGCGAGTTGGATGCACGCAGCGGCAAGAGCGGTCAGTGGCGGACCGG
TGTACATCAGCGACAGACCAGGGTAA
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