mRNA_H-canaliculatus_F_contig1392.3116.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1392.3116.1
Unique NamemRNA_H-canaliculatus_F_contig1392.3116.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1392.3116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1392contigH-canaliculatus_F_contig1392:24029..26067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929137.0298393-CDS-H-canaliculatus_F_contig1392:24029..242271622929137.0298393-CDS-H-canaliculatus_F_contig1392:24029..24227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1392 24030..24227 -
1696845691.3699815-CDS-H-canaliculatus_F_contig1392:24029..242271696845691.3699815-CDS-H-canaliculatus_F_contig1392:24029..24227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1392 24030..24227 -
1622929137.0452805-CDS-H-canaliculatus_F_contig1392:26001..260671622929137.0452805-CDS-H-canaliculatus_F_contig1392:26001..26067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1392 26002..26067 -
1696845691.378541-CDS-H-canaliculatus_F_contig1392:26001..260671696845691.378541-CDS-H-canaliculatus_F_contig1392:26001..26067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1392 26002..26067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1392.3116.1prot_H-canaliculatus_F_contig1392.3116.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1392 24030..26067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1392.3116.1

>prot_H-canaliculatus_F_contig1392.3116.1 ID=prot_H-canaliculatus_F_contig1392.3116.1|Name=mRNA_H-canaliculatus_F_contig1392.3116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=88bp
EGSNAAALPSLGCCNESLSPYKVPLLRFRYQHQETRGFLDITTIRALYTA
LGEKTLLSFEKSTRYSEKQDPRSLLQVLRIFLLVKSQQ
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mRNA from alignment at H-canaliculatus_F_contig1392:24029..26067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1392.3116.1 ID=mRNA_H-canaliculatus_F_contig1392.3116.1|Name=mRNA_H-canaliculatus_F_contig1392.3116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2039bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1392:24029..26067- (Hapterophycus canaliculatus Oshoro5f female)
GAAGGATCCAACGCTGCCGCTCTACCCAGTCTAGGTTGTTGCAACGAATC
GTTATCGCCATACAAGGTATCATATGTCCTCTGAACCACGCACTCACCTT
GAACTCATTCCCTGTCGAATAAGACTTTCAGCATCGGTCCTTTTCGAGTT
ATCGGGGGATAAAATCTTACAAGTAGCACCTTCCGTTGGTTGTTGATGTA
GAGGAGCCAGGTGAATGGGAGGACAGAGGGACAGGGGGCAAGAGCAGCTG
ACGTGTTTCGGTGACTAGATCGCGAGACGCCCCCCATCACTGATAAGTCC
ATCACTGATCAGCCCATCAGCCCATTAGCCCAATTGCCCGTCAGCCCGTC
AGCCCCAACAGCCCAGCGGCATGAAAAGGGGGGGCTTCATTGCTTCATTT
CTCGAACAAAGAAAGAAAAGAAACGGAGAACTGACACGAAAACACAGAGC
AGGGATGGAGGAGCAGGCTCCTGCTGCATTCCGCTAGGCACAGCGACTAG
CGACTTATTATCTCGTTAGTTCGGAAGAGGGCGAAACCAGATGTTAGTGC
TGTCGCCCTGCTAGCTCGTCAGGGGCGGGGTTCGTTCGGTGAGTGAGTGG
GAAATGGTCCCTTTAAAAGCCATGTGATCTCGGACTTGTCTCGACGATGT
TGGTTGTTATATGATTTCTTTATTTGGTCGAAACGCTCATCCCTCCGCTC
CGCTCAACAGCCCACGCACAGATTAGTGTCGCTGTTGTTAGTACACTGTG
GAGTCACCAAGAAAAGACGCAGAGGAGCACAAGAAGGAAGATAGATGGTG
ATGGTATATACCAGGTATAAACTTCGTTTCTAAAGAAACTTTGTTTGTTT
AGCAAAACTGTGCTGTAACTGCAACTAACTCTTGTTGTTGTTCTCTGTTG
TTTTCCTTCTTCTCTTTGTGCGCGTGATATCAAAAATAGGTACCAGGTAT
AGAAGTTGACAGTCCGTACAAGTAATAATAATGCGAAAGACTTTCTTTCA
CCGACGCGCTGCAGGCACCCCCGACGAACATCAACAAAATGTTCGCCCTC
CCTCCACGAATGAACAGCCTCTACCTTTTCTTTTTGCTGTTCACAGTTCA
CAACCCGCCAGCAGACTGACTGACGTTGGATCTTGAACATCGACGACATA
ACGCGACAAGGTCTTTCATTCATCATGCCATTCGATGACAAACTCCCGAT
GTGTGTTGTCACCGTCACCTGCTCTGTCCCGCACGCAAAGAGAAGATACA
AATACAAGGTCTTTTATTTATCATGACATTCGATGACAAACTCTCGATGT
GTGTTGTCACAGTCACCTGCTCTGTCCCGCACGTAAAGAGAACATATCAT
ACAGTTACACAAGTCCACACAACGTCACGCGCGCACACACACACGCGTTT
GTTTCAAGAATGGCTCGGAGATGATGCACAAGTCGAAGGAGTGAAACACG
GGCTTTTTTTCGAAGAGATGCCCATCAACTTTCTTTGTATATTTGATCTG
GTAACATGAGGTGTCGACCGCAGCAGCACCGGAGTGCGCAGCTAACAACA
GTTTAACAATGCGACGAATGAGTGCTACGCAAAACGCAATACTCTGTAGC
GCCTAAGCCACTAGTAAATACGGAGTAGGTAGGTGCCTCTTGTACTTGTA
AAGAAGACGCACATGTAGGGCGTTTCACAAACAAACCACAATAACCAACA
ACTCATCTCACTGTTCGTGTACGATCTTGCTTCTCCTTTGTTTGCCACGG
TCCCCACCTTACTTCCGTACCTCGAGGTTTGATGCCTCTGTCCTGTAGTT
TTGACCTTTGGCCTTCCGTTCGTCTTGACTTTGTTGGGAGGTACCACTGC
TGCGGTTTCGGTACCAACATCAAGAGACGAGAGGATTTTTGGACATCACG
ACCATCCGTGCACTCTACACAGCCCTCGGGGAGAAAACGTTGCTGTCGTT
CGAGAAGTCGACACGATATTCGGAGAAACAAGACCCAAGGTCGCTTCTTC
AAGTTCTTCGGATCTTTCTTTTGGTGAAGAGTCAGCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1392:24029..26067-

>mRNA_H-canaliculatus_F_contig1392.3116.1 ID=mRNA_H-canaliculatus_F_contig1392.3116.1|Name=mRNA_H-canaliculatus_F_contig1392.3116.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=528bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1392:24029..26067- (Hapterophycus canaliculatus Oshoro5f female)
GAAGGATCCAACGCTGCCGCTCTACCCAGTCTAGGTTGTTGCAACGAATC
GTTATCGCCATACAAGGAAGGATCCAACGCTGCCGCTCTACCCAGTCTAG
GTTGTTGCAACGAATCGTTATCGCCATACAAGGTACCACTGCTGCGGTTT
CGGTACCAACATCAAGAGACGAGAGGATTTTTGGACATCACGACCATCCG
TGCACTCTACACAGCCCTCGGGGAGAAAACGTTGCTGTCGTTCGAGAAGT
CGACACGATATTCGGAGAAACAAGACCCAAGGTCGCTTCTTCAAGTTCTT
CGGATCTTTCTTTTGGTGAAGAGTCAGCAGGTACCACTGCTGCGGTTTCG
GTACCAACATCAAGAGACGAGAGGATTTTTGGACATCACGACCATCCGTG
CACTCTACACAGCCCTCGGGGAGAAAACGTTGCTGTCGTTCGAGAAGTCG
ACACGATATTCGGAGAAACAAGACCCAAGGTCGCTTCTTCAAGTTCTTCG
GATCTTTCTTTTGGTGAAGAGTCAGCAG
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