mRNA_H-canaliculatus_F_contig13907.3106.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13907.3106.1
Unique NamemRNA_H-canaliculatus_F_contig13907.3106.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13907.3106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13907contigH-canaliculatus_F_contig13907:1980..2817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size796
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13907.3106.1prot_H-canaliculatus_F_contig13907.3106.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13907 2085..2708 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.3525512-UTR-H-canaliculatus_F_contig13907:1979..20841622929135.3525512-UTR-H-canaliculatus_F_contig13907:1979..2084Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13907 1980..2084 +
1696845690.9057992-UTR-H-canaliculatus_F_contig13907:1979..20841696845690.9057992-UTR-H-canaliculatus_F_contig13907:1979..2084Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13907 1980..2084 +
1622929135.4051573-UTR-H-canaliculatus_F_contig13907:2708..28171622929135.4051573-UTR-H-canaliculatus_F_contig13907:2708..2817Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13907 2709..2817 +
1696845690.9377353-UTR-H-canaliculatus_F_contig13907:2708..28171696845690.9377353-UTR-H-canaliculatus_F_contig13907:2708..2817Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13907 2709..2817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.3696687-CDS-H-canaliculatus_F_contig13907:2084..21651622929135.3696687-CDS-H-canaliculatus_F_contig13907:2084..2165Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13907 2085..2165 +
1696845690.9138231-CDS-H-canaliculatus_F_contig13907:2084..21651696845690.9138231-CDS-H-canaliculatus_F_contig13907:2084..2165Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13907 2085..2165 +
1622929135.3881667-CDS-H-canaliculatus_F_contig13907:2207..27081622929135.3881667-CDS-H-canaliculatus_F_contig13907:2207..2708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13907 2208..2708 +
1696845690.9255924-CDS-H-canaliculatus_F_contig13907:2207..27081696845690.9255924-CDS-H-canaliculatus_F_contig13907:2207..2708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13907 2208..2708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13907.3106.1

>prot_H-canaliculatus_F_contig13907.3106.1 ID=prot_H-canaliculatus_F_contig13907.3106.1|Name=mRNA_H-canaliculatus_F_contig13907.3106.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=194bp
MFVPCLSCAFQQQLPHVSFSLSTPPSVGVAAQHAGRPGTSHPFILLVPLA
HRCCCCCRSCCRSCRCRRRRRRRRCPPEPLARNHPPYSDLTHGEWLCLSG
SGKHAAEKTKDRVTAAGWVLPCCDRRRCWVGGVAAAPGGTGSPCSGHLSG
PLPGADLVRWVFVCYSPLLVTRAGRFDLEEMLGLVCLILRRRA*
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mRNA from alignment at H-canaliculatus_F_contig13907:1980..2817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13907.3106.1 ID=mRNA_H-canaliculatus_F_contig13907.3106.1|Name=mRNA_H-canaliculatus_F_contig13907.3106.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=838bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13907:1980..2817+ (Hapterophycus canaliculatus Oshoro5f female)
TGCATAGGTTGAGGTCATTGCTGACATGTTTGGAGGATACTCATCGACAC
TTCGTGCGCTCCACCGGGCGCCGTGTGAGATTGTGGCACTGCCCCGCTGT
CGCGCATGTTTGTGCCTTGCTTGTCCTGTGCGTTTCAGCAGCAACTTCCG
CACGTGTCTTTCAGCTTGTCGACGCCACCTTCTGTGGTCGCCACTATTCG
GCGTCGTTTAATCGCGTCTGTTTCACAGGGGGTCGCGGCCCAACATGCAG
GACGACCCGGCACATCTCACCCCTTCATTCTCCTCGTGCCTCTCGCACAC
CGCTGTTGCTGTTGCTGCCGCTCTTGCTGCCGCTCTTGCCGCTGCCGCCG
CCGCCGACGACGACGACGATGCCCCCCCGAACCCCTGGCTCGAAACCACC
CACCCTATTCTGATCTCACGCACGGCGAATGGCTTTGCTTGTCGGGGTCA
GGCAAGCACGCGGCCGAAAAGACCAAAGACCGCGTGACCGCCGCCGGATG
GGTCCTTCCTTGCTGTGACCGGCGACGTTGCTGGGTTGGAGGAGTCGCGG
CTGCCCCGGGTGGGACCGGATCGCCGTGCTCGGGGCATCTCTCGGGCCCG
CTCCCCGGGGCTGACTTGGTACGCTGGGTGTTCGTCTGTTATTCGCCGCT
TTTGGTCACTAGGGCAGGGCGGTTCGACCTCGAGGAGATGCTTGGGTTGG
TGTGTCTGATCTTGAGGAGGAGGGCGTGAGAGGGTTGTTGCTGAGCCTGC
TGGCAAGTGCTTGCGAATTGGACCAGGAAGGGAAACGACCCAACAGCGGC
CCAAAGAAACTTGTTTGGTGTTAGAATCTCGGATGCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13907:1980..2817+

>mRNA_H-canaliculatus_F_contig13907.3106.1 ID=mRNA_H-canaliculatus_F_contig13907.3106.1|Name=mRNA_H-canaliculatus_F_contig13907.3106.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13907:1980..2817+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTGTGCCTTGCTTGTCCTGTGCGTTTCAGCAGCAACTTCCGCACGT
GTCTTTCAGCTTGTCGACGCCACCTTCTGTGATGTTTGTGCCTTGCTTGT
CCTGTGCGTTTCAGCAGCAACTTCCGCACGTGTCTTTCAGCTTGTCGACG
CCACCTTCTGTGGGGGTCGCGGCCCAACATGCAGGACGACCCGGCACATC
TCACCCCTTCATTCTCCTCGTGCCTCTCGCACACCGCTGTTGCTGTTGCT
GCCGCTCTTGCTGCCGCTCTTGCCGCTGCCGCCGCCGCCGACGACGACGA
CGATGCCCCCCCGAACCCCTGGCTCGAAACCACCCACCCTATTCTGATCT
CACGCACGGCGAATGGCTTTGCTTGTCGGGGTCAGGCAAGCACGCGGCCG
AAAAGACCAAAGACCGCGTGACCGCCGCCGGATGGGTCCTTCCTTGCTGT
GACCGGCGACGTTGCTGGGTTGGAGGAGTCGCGGCTGCCCCGGGTGGGAC
CGGATCGCCGTGCTCGGGGCATCTCTCGGGCCCGCTCCCCGGGGCTGACT
TGGTACGCTGGGTGTTCGTCTGTTATTCGCCGCTTTTGGTCACTAGGGCA
GGGCGGTTCGACCTCGAGGAGATGCTTGGGTTGGTGTGTCTGATCTTGAG
GAGGAGGGCGTGAGGGGTCGCGGCCCAACATGCAGGACGACCCGGCACAT
CTCACCCCTTCATTCTCCTCGTGCCTCTCGCACACCGCTGTTGCTGTTGC
TGCCGCTCTTGCTGCCGCTCTTGCCGCTGCCGCCGCCGCCGACGACGACG
ACGATGCCCCCCCGAACCCCTGGCTCGAAACCACCCACCCTATTCTGATC
TCACGCACGGCGAATGGCTTTGCTTGTCGGGGTCAGGCAAGCACGCGGCC
GAAAAGACCAAAGACCGCGTGACCGCCGCCGGATGGGTCCTTCCTTGCTG
TGACCGGCGACGTTGCTGGGTTGGAGGAGTCGCGGCTGCCCCGGGTGGGA
CCGGATCGCCGTGCTCGGGGCATCTCTCGGGCCCGCTCCCCGGGGCTGAC
TTGGTACGCTGGGTGTTCGTCTGTTATTCGCCGCTTTTGGTCACTAGGGC
AGGGCGGTTCGACCTCGAGGAGATGCTTGGGTTGGTGTGTCTGATCTTGA
GGAGGAGGGCGTGA
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