mRNA_H-canaliculatus_F_contig13905.3105.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13905.3105.1
Unique NamemRNA_H-canaliculatus_F_contig13905.3105.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13905.3105.1 vs. uniprot
Match: A0A6H5JE47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE47_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 9.120e-54
Identity = 95/132 (71.97%), Postives = 104/132 (78.79%), Query Frame = 1 
Query:   22 RRRGRAERDPAELEGRRHSCREFGCPRRAHFGTPGWVPAHCVEHRRDWEVLLKYASCLSEGCLETPGYGIVGDRSRVYCRRHRAPGSVSLACAGWKIPDDSRGAN------------GGGWVEAEEDGMGVP 381
            RRR RA+R  AE +G+RHSCRE  CPRRAHFG+PGWVPAHC EHRRDWEVLLKYASCLSEGCLETP YG+ GDRSR+YC+RHR PGSVSLA  GWK+PD   G +            GGGWVEAEEDGMGVP
Sbjct: 1179 RRRPRADRGLAEPDGKRHSCREIDCPRRAHFGSPGWVPAHCEEHRRDWEVLLKYASCLSEGCLETPHYGLPGDRSRLYCKRHRFPGSVSLASTGWKVPDVGDGGSCGXXXXXXXXXHGGGWVEAEEDGMGVP 1310
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BLAST of mRNA_H-canaliculatus_F_contig13905.3105.1 vs. uniprot
Match: D7FWE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWE9_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.200e-53
Identity = 94/133 (70.68%), Postives = 104/133 (78.20%), Query Frame = 1 
Query:   22 RRRGRAERDPAELEGRRHSCREFGCPRRAHFGTPGWVPAHCVEHRRDWEVLLKYASCLSEGCLETPGYGIVGDRSRVYCRRHRAPGSVSLACAGWKIPDDS-------------RGANGGGWVEAEEDGMGVP 381
            RRR RA+R  AE +G+RHSCRE  CPRRAHFG+PGWVPAHC EHRRDWEVLLKYASCLSEGCLE P YG+ GDRSR+YC+RHR PGS+SL   GWK+PD               RGA+GGGWVEAEEDGMGVP
Sbjct: 1069 RRRPRADRGSAEPDGKRHSCREIDCPRRAHFGSPGWVPAHCEEHRRDWEVLLKYASCLSEGCLEIPRYGLPGDRSRLYCKRHRFPGSMSLESTGWKVPDAGDDGXXXXXXXXXXRGAHGGGWVEAEEDGMGVP 1201
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13905.3105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE47_9PHAE9.120e-5471.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWE9_ECTSI1.200e-5370.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13905contigH-canaliculatus_F_contig13905:20..2039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-09_003930.1
Hectar predicted targeting categoryother localisation
Exons3
Model size1183
Cds size1182
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13905.3105.1prot_H-canaliculatus_F_contig13905.3105.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13905 20..2039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.2612078-CDS-H-canaliculatus_F_contig13905:19..3521622929135.2612078-CDS-H-canaliculatus_F_contig13905:19..352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13905 20..352 -
1696845690.865018-CDS-H-canaliculatus_F_contig13905:19..3521696845690.865018-CDS-H-canaliculatus_F_contig13905:19..352Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13905 20..352 -
1622929135.2749023-CDS-H-canaliculatus_F_contig13905:463..11321622929135.2749023-CDS-H-canaliculatus_F_contig13905:463..1132Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13905 464..1132 -
1696845690.875815-CDS-H-canaliculatus_F_contig13905:463..11321696845690.875815-CDS-H-canaliculatus_F_contig13905:463..1132Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13905 464..1132 -
1622929135.28826-CDS-H-canaliculatus_F_contig13905:1859..20391622929135.28826-CDS-H-canaliculatus_F_contig13905:1859..2039Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13905 1860..2039 -
1696845690.8943014-CDS-H-canaliculatus_F_contig13905:1859..20391696845690.8943014-CDS-H-canaliculatus_F_contig13905:1859..2039Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13905 1860..2039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13905.3105.1

>prot_H-canaliculatus_F_contig13905.3105.1 ID=prot_H-canaliculatus_F_contig13905.3105.1|Name=mRNA_H-canaliculatus_F_contig13905.3105.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=394bp
IAARISSRRRGRAERDPAELEGRRHSCREFGCPRRAHFGTPGWVPAHCVE
HRRDWEVLLKYASCLSEGCLETPGYGIVGDRSRVYCRRHRAPGSVSLACA
GWKIPDDSRGANGGGWVEAEEDGMGVPVDSDAEAEGELEDERAAAAAAAA
EGEERGPAEEDEEEEEEEEEERGVAEAAVSRGSGGSGGGEKLCGGIKSGK
RKAESGGRGAAGAQEQPEEEKAEAEDSGGAAKKRRAEAASSGGRPKGKGK
ATAATAATAHEEETEESSSSGSDSDSGSETDVKAAAAKEAAARAAAAKKA
AAAREAAAKAAAAAAAAAQAAAAAAAAKEEEEAKAKARAEAKAASAKAKA
DAKRDETLLADAEFALGRFVFLVPPKSKKCDRPILVGKIVDKMP
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mRNA from alignment at H-canaliculatus_F_contig13905:20..2039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13905.3105.1 ID=mRNA_H-canaliculatus_F_contig13905.3105.1|Name=mRNA_H-canaliculatus_F_contig13905.3105.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2020bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13905:20..2039- (Hapterophycus canaliculatus Oshoro5f female)
ATCGCCGCCAGAATCAGCAGCCGTCGCCGGGGCCGCGCGGAGCGGGACCC
GGCCGAGCTGGAGGGCAGGAGGCATTCCTGCCGGGAGTTCGGGTGTCCGA
GGCGTGCGCATTTCGGGACGCCTGGGTGGGTGCCGGCGCACTGCGTGGAG
CACCGGCGGGACTGGGAGGTCCTCCTCAAGGTGCGTAGCGACGACCGGGA
TCGAGCCTTGGGCGTGTGTGCGCGTTCTTCACCCTCCGTTTCCTTAGGGT
GAAGGAAGTAAGGGGAGGCTGTGAACGGCGTCCTGTTTCGGCCTCCTTTT
TTTTTGTTTCTCGACGGGCAATGAGCGCCTCCGAACCGCGCCGTGGAGGG
TGCCGGTACTTTTTATTTGTGTTTTGTTGGCTCGTGTCAGACGTTGCGAC
GAAATAGACCCCGGAGTGTGCTTGCTGCTGCTTCTAGACGCGTTCCAGCG
GTGCGCTCGGCGTTGGGGGGGGGCTCCGCTGATTGCGTTCGGCTTGCACG
TGCAACCCCTCCCCCTCCGCGCGCGCGACTGCAGCCACCGCGGTGACCAG
CGATCAATTTTCCTCCCCTCGATACTTGTGCTGGGAGAAGACCACAACGC
GCTGGTCGAAGCCTGCCTGCTTGCCTGCTTGCCTGCCTGCCCTCCTCACG
AAACCCGCGCACGTGCCCCCTCGCACCTCCCACTCTGAACGCTGCCGTGC
CCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCGCCCCCCCCC
CCCCCCCGGGGGGCGCGGGGGCGGGCCGGGGGGGNNNNNNNNNGCCTGCT
TGCCTGCCTGCCCTCCTCACGAAACCCCCGCACGTGCCCCCTCGCCCCTC
CCACTCTGAACGCTGCCGTGCCCCCCCCCCCCCTCCCGGCCGTCGACGGA
CAAACAGTACGCCTCGTGCCTGTCCGAGGGTTGCTTGGAGACGCCTGGGT
ACGGGATAGTCGGCGACCGGTCGCGTGTGTACTGCCGGCGGCACCGCGCC
CCCGGCTCCGTCAGCCTGGCCTGCGCAGGCTGGAAGATCCCGGACGACTC
CCGCGGCGCGAACGGGGGCGGCTGGGTGGAGGCCGAGGAGGACGGGATGG
GGGTCCCGGTGGACTCGGACGCGGAAGCGGAGGGCGAGCTGGAGGACGAG
AGAGCGGCGGCGGCGGCAGCGGCGGCGGAGGGCGAGGAAAGGGGCCCCGC
AGAGGAGGACGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGAGGGGCGTCG
CGGAAGCTGCGGTGTCGCGGGGGAGCGGCGGCAGCGGCGGCGGCGAGAAG
TTGTGCGGGGGTATCAAGAGCGGCAAGAGGAAGGCCGAATCGGGGGGAAG
GGGGGCGGCCGGCGCGCAAGAACAGCCAGAAGAGGAAAAGGCAGAGGCTG
AAGATAGCGGCGGCGCAGCCAAGAAGAGAAGGGCGGAGGCTGCGTCCTCG
GGCGGACGACCGAAGGGCAAGGGGAAAGCGACGGCGGCGACGGCCGCTAC
GGCACATGAAGAAGAAACGGAGGAATCGTCCTCCTCGGGGTCCGATTCCG
ATTCGGGATCTGAAACCGACGTCAAGGTTTCGAGAGAGGATGCCGAAGAA
TATCGAGCGAGAGCTGCGGCGGCGGCAGCAGCGGCGGCAGCAAGAGCACG
AGCGGCGGCGGCGGCGGCGGCGGATGCGGCTGCAAAGGCGGCCGCGGCGA
AGGAAGCGGCGGCGAGAGCGGCCGCGGCGAAGAAGGCGGCCGCGGCACGA
GAAGCGGCAGCAAAGGCGGCGGCGGCGGCGGCGGCGGCGGCCCAAGCGGC
AGCCGCAGCAGCGGCGGCGAAGGAGGAGGAGGAGGCGAAGGCGAAGGCTA
GGGCCGAGGCCAAGGCCGCATCGGCAAAGGCCAAGGCCGACGCGAAGAGA
GACGAAACCCTCCTCGCCGACGCCGAGTTCGCGCTCGGGCGCTTCGTGTT
CCTCGTGCCCCCTAAGTCCAAGAAGTGCGACCGCCCGATCCTCGTCGGCA
AGATCGTCGACAAGATGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13905:20..2039-

>mRNA_H-canaliculatus_F_contig13905.3105.1 ID=mRNA_H-canaliculatus_F_contig13905.3105.1|Name=mRNA_H-canaliculatus_F_contig13905.3105.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2364bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13905:20..2039- (Hapterophycus canaliculatus Oshoro5f female)
ATCGCCGCCAGAATCAGCAGCCGTCGCCGGGGCCGCGCGGAGCGGGACCC
GGCCGAGCTGGAGGGCAGGAGGCATTCCTGCCGGGAGTTCGGGTGTCCGA
GGCGTGCGCATTTCGGGACGCCTGGGTGGGTGCCGGCGCACTGCGTGGAG
CACCGGCGGGACTGGGAGGTCCTCCTCAAGATCGCCGCCAGAATCAGCAG
CCGTCGCCGGGGCCGCGCGGAGCGGGACCCGGCCGAGCTGGAGGGCAGGA
GGCATTCCTGCCGGGAGTTCGGGTGTCCGAGGCGTGCGCATTTCGGGACG
CCTGGGTGGGTGCCGGCGCACTGCGTGGAGCACCGGCGGGACTGGGAGGT
CCTCCTCAAGTACGCCTCGTGCCTGTCCGAGGGTTGCTTGGAGACGCCTG
GGTACGGGATAGTCGGCGACCGGTCGCGTGTGTACTGCCGGCGGCACCGC
GCCCCCGGCTCCGTCAGCCTGGCCTGCGCAGGCTGGAAGATCCCGGACGA
CTCCCGCGGCGCGAACGGGGGCGGCTGGGTGGAGGCCGAGGAGGACGGGA
TGGGGGTCCCGGTGGACTCGGACGCGGAAGCGGAGGGCGAGCTGGAGGAC
GAGAGAGCGGCGGCGGCGGCAGCGGCGGCGGAGGGCGAGGAAAGGGGCCC
CGCAGAGGAGGACGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGAGGGGCG
TCGCGGAAGCTGCGGTGTCGCGGGGGAGCGGCGGCAGCGGCGGCGGCGAG
AAGTTGTGCGGGGGTATCAAGAGCGGCAAGAGGAAGGCCGAATCGGGGGG
AAGGGGGGCGGCCGGCGCGCAAGAACAGCCAGAAGAGGAAAAGGCAGAGG
CTGAAGATAGCGGCGGCGCAGCCAAGAAGAGAAGGGCGGAGGCTGCGTCC
TCGGGCGGACGACCGAAGGGCAAGGGGAAAGCGACGGCGGCGACGGCCGC
TACGGCACATGAAGAAGAAACGGAGGAATCGTCCTCCTCGGGGTCCGATT
CCGATTCGGGATCTGAAACCGACGTCAAGTACGCCTCGTGCCTGTCCGAG
GGTTGCTTGGAGACGCCTGGGTACGGGATAGTCGGCGACCGGTCGCGTGT
GTACTGCCGGCGGCACCGCGCCCCCGGCTCCGTCAGCCTGGCCTGCGCAG
GCTGGAAGATCCCGGACGACTCCCGCGGCGCGAACGGGGGCGGCTGGGTG
GAGGCCGAGGAGGACGGGATGGGGGTCCCGGTGGACTCGGACGCGGAAGC
GGAGGGCGAGCTGGAGGACGAGAGAGCGGCGGCGGCGGCAGCGGCGGCGG
AGGGCGAGGAAAGGGGCCCCGCAGAGGAGGACGAAGAGGAGGAGGAAGAG
GAGGAGGAGGAGAGGGGCGTCGCGGAAGCTGCGGTGTCGCGGGGGAGCGG
CGGCAGCGGCGGCGGCGAGAAGTTGTGCGGGGGTATCAAGAGCGGCAAGA
GGAAGGCCGAATCGGGGGGAAGGGGGGCGGCCGGCGCGCAAGAACAGCCA
GAAGAGGAAAAGGCAGAGGCTGAAGATAGCGGCGGCGCAGCCAAGAAGAG
AAGGGCGGAGGCTGCGTCCTCGGGCGGACGACCGAAGGGCAAGGGGAAAG
CGACGGCGGCGACGGCCGCTACGGCACATGAAGAAGAAACGGAGGAATCG
TCCTCCTCGGGGTCCGATTCCGATTCGGGATCTGAAACCGACGTCAAGGC
GGCCGCGGCGAAGGAAGCGGCGGCGAGAGCGGCCGCGGCGAAGAAGGCGG
CCGCGGCACGAGAAGCGGCAGCAAAGGCGGCGGCGGCGGCGGCGGCGGCG
GCCCAAGCGGCAGCCGCAGCAGCGGCGGCGAAGGAGGAGGAGGAGGCGAA
GGCGAAGGCTAGGGCCGAGGCCAAGGCCGCATCGGCAAAGGCCAAGGCCG
ACGCGAAGAGAGACGAAACCCTCCTCGCCGACGCCGAGTTCGCGCTCGGG
CGCTTCGTGTTCCTCGTGCCCCCTAAGTCCAAGAAGTGCGACCGCCCGAT
CCTCGTCGGCAAGATCGTCGACAAGATGCCGGCGGCCGCGGCGAAGGAAG
CGGCGGCGAGAGCGGCCGCGGCGAAGAAGGCGGCCGCGGCACGAGAAGCG
GCAGCAAAGGCGGCGGCGGCGGCGGCGGCGGCGGCCCAAGCGGCAGCCGC
AGCAGCGGCGGCGAAGGAGGAGGAGGAGGCGAAGGCGAAGGCTAGGGCCG
AGGCCAAGGCCGCATCGGCAAAGGCCAAGGCCGACGCGAAGAGAGACGAA
ACCCTCCTCGCCGACGCCGAGTTCGCGCTCGGGCGCTTCGTGTTCCTCGT
GCCCCCTAAGTCCAAGAAGTGCGACCGCCCGATCCTCGTCGGCAAGATCG
TCGACAAGATGCCG
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