mRNA_H-canaliculatus_F_contig13901.3104.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13901.3104.1
Unique NamemRNA_H-canaliculatus_F_contig13901.3104.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: A0A6H5KRX4_9PHAE (ANAPC4_WD40 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRX4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 6.150e-23
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QVDTNPDPRPFGSVKPFGEAYHQFSCGGWVTAVAWSPSGSTLAYAGE 141
            +VDTNPDPRPFG+VKPFGEAYHQFSCGGWVTAVAWSPSGS LAYAG+
Sbjct:  186 EVDTNPDPRPFGTVKPFGEAYHQFSCGGWVTAVAWSPSGSILAYAGQ 232
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: L8GH55_ACACA (Actin-related protein 2/3 complex subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GH55_ACACA)

HSP 1 Score: 55.1 bits (131), Expect = 3.070e-7
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    4 VDTNPDPRPFGSVKPFGEAYHQFSCGGWVTAVAWSPSGSTLAY 132
            VD  P+  PFG   PFGE   ++SCGGWV  V+WSPSG  L++
Sbjct:  182 VDKRPENTPFGDKLPFGEMLAEYSCGGWVHGVSWSPSGEWLSF 224
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: A0A812V2M3_SYMMI (ARPC1A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V2M3_SYMMI)

HSP 1 Score: 53.1 bits (126), Expect = 4.190e-7
Identity = 27/49 (55.10%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:    4 VDTNPDPRPFGSVKPFGEAYHQFSCGGWVTAVAWSPSGSTLAYAGESRS 150
            VD  P    F     FGEAY +FS  GWVT VAWSPSG +L YAG   S
Sbjct:   42 VDAAPSQGNFEKPLEFGEAYCEFSSHGWVTGVAWSPSGESLCYAGHDSS 90
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: A0A8K1FHC8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHC8_PYTOL)

HSP 1 Score: 51.6 bits (122), Expect = 5.220e-6
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    4 VDTNPDPRPFGSVKPFGEAYHQF-SCGGWVTAVAWSPSGSTLAYAGESRS 150
            VD  P+P PF  + PFGE   +F +   WV AVAWSPSG+ LA+AG   S
Sbjct:  186 VDGAPNPGPFPQLAPFGEPLAEFDNANAWVNAVAWSPSGNRLAFAGHGSS 235
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: A0A6A5H4H5_CAERE (ANAPC4_WD40 domain-containing protein (Fragment) n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A6A5H4H5_CAERE)

HSP 1 Score: 50.8 bits (120), Expect = 9.390e-6
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 QVDTNPDPRPFGSVKPFGEAYHQFSCGGWVTAVAWSPSGSTLAY 132
            +VD  P P P+G   PFG+   ++S GGWV  VA+SPSG  LA+
Sbjct:  118 EVDEKPSPNPWGQKMPFGQLMSEYSVGGWVHRVAFSPSGCRLAF 161
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: A0A2P4VA15_CAERE (Uncharacterized protein n=2 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A2P4VA15_CAERE)

HSP 1 Score: 50.8 bits (120), Expect = 1.010e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 QVDTNPDPRPFGSVKPFGEAYHQFSCGGWVTAVAWSPSGSTLAY 132
            +VD  P P P+G   PFG+   ++S GGWV  VA+SPSG  LA+
Sbjct:  182 EVDEKPSPNPWGQKMPFGQLMSEYSVGGWVHRVAFSPSGCRLAF 225
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: A0A662WKQ5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKQ5_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.400e-5
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    4 VDTNPDPRPFGSVKPFGEAYHQF-SCGGWVTAVAWSPSGSTLAYAGESRS 150
            VD  PD  PF ++ PFGE   +F +   WV AVAWSP G  LA+AG+  S
Sbjct:  160 VDGPPDAGPFEALPPFGEPVAEFDNASAWVNAVAWSPKGDRLAFAGQGSS 209
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: A8XT67_CAEBR (Actin-related protein 2/3 complex subunit n=10 Tax=Caenorhabditis TaxID=6237 RepID=A8XT67_CAEBR)

HSP 1 Score: 49.7 bits (117), Expect = 2.500e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 QVDTNPDPRPFGSVKPFGEAYHQFSCGGWVTAVAWSPSGSTLAY 132
            +VD  P P P+G   PFG+   +++ GGWV  VA+SPSG  LA+
Sbjct:  182 EVDEKPSPNPWGQKMPFGQLMSEYTVGGWVHRVAFSPSGCRLAF 225
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: D0P410_PHYIT (Actin-related protein 2/3 complex subunit n=25 Tax=Peronosporaceae TaxID=4777 RepID=D0P410_PHYIT)

HSP 1 Score: 49.7 bits (117), Expect = 2.500e-5
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    4 VDTNPDPRPFGSVKPFGEAYHQF-SCGGWVTAVAWSPSGSTLAYAGESRS 150
            +D  PD  PF ++ PFGE   +F +   WV AVAWSP G+ LA+AG+  S
Sbjct:  185 IDGPPDAGPFEALPPFGEPLAEFDNASAWVNAVAWSPKGNRLAFAGQGSS 234
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BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Match: A0A1I7XSB6_HETBA (Uncharacterized protein n=1 Tax=Heterorhabditis bacteriophora TaxID=37862 RepID=A0A1I7XSB6_HETBA)

HSP 1 Score: 48.5 bits (114), Expect = 3.430e-5
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 QVDTNPDPRPFGSVKPFGEAYHQFSCGGWVTAVAWSPSGSTLAY 132
            +VD  P P P+GS  PFG+   ++S GGWV  V++SPSG  L +
Sbjct:   87 EVDEKPSPNPWGSKMPFGQLLGEYSAGGWVHNVSFSPSGCRLIW 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13901.3104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KRX4_9PHAE6.150e-2391.49ANAPC4_WD40 domain-containing protein n=2 Tax=Ecto... [more]
L8GH55_ACACA3.070e-753.49Actin-related protein 2/3 complex subunit n=1 Tax=... [more]
A0A812V2M3_SYMMI4.190e-755.10ARPC1A protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A8K1FHC8_PYTOL5.220e-652.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A5H4H5_CAERE9.390e-650.00ANAPC4_WD40 domain-containing protein (Fragment) n... [more]
A0A2P4VA15_CAERE1.010e-550.00Uncharacterized protein n=2 Tax=Caenorhabditis rem... [more]
A0A662WKQ5_9STRA2.400e-550.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A8XT67_CAEBR2.500e-547.73Actin-related protein 2/3 complex subunit n=10 Tax... [more]
D0P410_PHYIT2.500e-548.00Actin-related protein 2/3 complex subunit n=25 Tax... [more]
A0A1I7XSB6_HETBA3.430e-547.73Uncharacterized protein n=1 Tax=Heterorhabditis ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13901contigH-canaliculatus_F_contig13901:2457..2648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3.9e-19
Seed eggNOG ortholog2880.D8LGD0
Preferred nameARPC1B
KEGG koko:K05757
KEGG Pathwayko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map04144,map04666,map04810,map05100,map05130,map05131,map05132
GOsGO:0000147,GO:0000278,GO:0000281,GO:0000902,GO:0000904,GO:0000910,GO:0001654,GO:0001700,GO:0001745,GO:0001891,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002431,GO:0002433,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0005885,GO:0005886,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006897,GO:0006909,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007399,GO:0007409,GO:0007413,GO:0007423,GO:0008037,GO:0008038,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0008154,GO:0008407,GO:0008593,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010638,GO:0010646,GO:0010647,GO:0012506,GO:0014070,GO:0015031,GO:0015629,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0022008,GO:0022402,GO:0022416,GO:0022607,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030030,GO:0030036,GO:0030037,GO:0030041,GO:0030139,GO:0030154,GO:0030175,GO:0030182,GO:0030479,GO:0030588,GO:0030589,GO:0030659,GO:0030666,GO:0030670,GO:0030832,GO:0030833,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031143,GO:0031175,GO:0031252,GO:0031253,GO:0031334,GO:0031344,GO:0031346,GO:0031410,GO:0031532,GO:0031982,GO:0032182,GO:0032271,GO:0032273,GO:0032355,GO:0032501,GO:0032502,GO:0032535,GO:0032940,GO:0032956,GO:0032970,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033627,GO:0033993,GO:0034314,GO:0034613,GO:0034622,GO:0036194,GO:0036195,GO:0036284,GO:0038093,GO:0038094,GO:0038096,GO:0042221,GO:0042886,GO:0042995,GO:0043130,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043627,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045010,GO:0045184,GO:0045335,GO:0045747,GO:0046903,GO:0046907,GO:0048013,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048592,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051258,GO:0051301,GO:0051489,GO:0051491,GO:0051493,GO:0051495,GO:0051641,GO:0051649,GO:0051716,GO:0060491,GO:0061024,GO:0061564,GO:0061640,GO:0061645,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090066,GO:0090527,GO:0090596,GO:0097435,GO:0097708,GO:0098588,GO:0098590,GO:0098657,GO:0098805,GO:0098858,GO:0099568,GO:0106030,GO:0110053,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1901700,GO:1902903,GO:1902905,GO:1903047
EggNOG free text desc.Arp2/3 complex-mediated actin nucleation
EggNOG OGsKOG1523@1,KOG1523@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionActin-related protein 2/3 complex subunit ARPC1B or p41-Arc (Arp2/3 complex 41 kDa subunit)
Ec32 orthologEc-06_002560.1
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.2117789-CDS-H-canaliculatus_F_contig13901:2456..26481622929135.2117789-CDS-H-canaliculatus_F_contig13901:2456..2648Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13901 2457..2648 -
1696845690.852629-CDS-H-canaliculatus_F_contig13901:2456..26481696845690.852629-CDS-H-canaliculatus_F_contig13901:2456..2648Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13901 2457..2648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13901.3104.1prot_H-canaliculatus_F_contig13901.3104.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13901 2457..2648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13901.3104.1

>prot_H-canaliculatus_F_contig13901.3104.1 ID=prot_H-canaliculatus_F_contig13901.3104.1|Name=mRNA_H-canaliculatus_F_contig13901.3104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=64bp
QVDTNPDPRPFGSVKPFGEAYHQFSCGGWVTAVAWSPSGSTLAYAGESRS
SPLSWREDGSCRHT
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mRNA from alignment at H-canaliculatus_F_contig13901:2457..2648-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13901.3104.1 ID=mRNA_H-canaliculatus_F_contig13901.3104.1|Name=mRNA_H-canaliculatus_F_contig13901.3104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=192bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13901:2457..2648- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGGATACGAACCCGGATCCCAGGCCGTTCGGGTCGGTGAAACCCTT
CGGCGAGGCGTACCACCAGTTCTCTTGCGGGGGTTGGGTGACGGCGGTGG
CTTGGTCGCCTTCCGGCTCCACCCTGGCGTACGCCGGTGAGAGCCGTTCT
TCCCCTCTGTCGTGGAGGGAAGACGGGAGCTGTAGACACACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13901:2457..2648-

>mRNA_H-canaliculatus_F_contig13901.3104.1 ID=mRNA_H-canaliculatus_F_contig13901.3104.1|Name=mRNA_H-canaliculatus_F_contig13901.3104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=384bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13901:2457..2648- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGGATACGAACCCGGATCCCAGGCCGTTCGGGTCGGTGAAACCCTT
CGGCGAGGCGTACCACCAGTTCTCTTGCGGGGGTTGGGTGACGGCGGTGG
CTTGGTCGCCTTCCGGCTCCACCCTGGCGTACGCCGGTGAGAGCCGTTCT
TCCCCTCTGTCGTGGAGGGAAGACGGGAGCTGTAGACACACGCAGGTGGA
TACGAACCCGGATCCCAGGCCGTTCGGGTCGGTGAAACCCTTCGGCGAGG
CGTACCACCAGTTCTCTTGCGGGGGTTGGGTGACGGCGGTGGCTTGGTCG
CCTTCCGGCTCCACCCTGGCGTACGCCGGTGAGAGCCGTTCTTCCCCTCT
GTCGTGGAGGGAAGACGGGAGCTGTAGACACACG
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