mRNA_H-canaliculatus_F_contig139.3092.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig139.3092.1
Unique NamemRNA_H-canaliculatus_F_contig139.3092.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig139.3092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig139contigH-canaliculatus_F_contig139:21970..22744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size775
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig139.3092.1prot_H-canaliculatus_F_contig139.3092.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig139 22128..22586 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.276314-UTR-H-canaliculatus_F_contig139:21969..221271622929133.276314-UTR-H-canaliculatus_F_contig139:21969..22127Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 21970..22127 +
1696845689.938618-UTR-H-canaliculatus_F_contig139:21969..221271696845689.938618-UTR-H-canaliculatus_F_contig139:21969..22127Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 21970..22127 +
1622929133.3173118-UTR-H-canaliculatus_F_contig139:22586..227441622929133.3173118-UTR-H-canaliculatus_F_contig139:22586..22744Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 22587..22744 +
1696845689.9571235-UTR-H-canaliculatus_F_contig139:22586..227441696845689.9571235-UTR-H-canaliculatus_F_contig139:22586..22744Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 22587..22744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.2938125-CDS-H-canaliculatus_F_contig139:22127..225861622929133.2938125-CDS-H-canaliculatus_F_contig139:22127..22586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 22128..22586 +
1696845689.9471328-CDS-H-canaliculatus_F_contig139:22127..225861696845689.9471328-CDS-H-canaliculatus_F_contig139:22127..22586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 22128..22586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig139.3092.1

>prot_H-canaliculatus_F_contig139.3092.1 ID=prot_H-canaliculatus_F_contig139.3092.1|Name=mRNA_H-canaliculatus_F_contig139.3092.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
MPTYIRRARRNAGWGREGLWIRVAQYSVEPVVPFSLYSSVSASSSVGIRC
KHQQRQRSQAELTSADFYPYSSIRREASDQHWLIRPRGFQNVSWYQSFQK
SIFSCARTIDRLTARRVPSRYSYFSFEVQKHRTIRLFGQLASKPPRPEFG
CE*
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mRNA from alignment at H-canaliculatus_F_contig139:21970..22744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig139.3092.1 ID=mRNA_H-canaliculatus_F_contig139.3092.1|Name=mRNA_H-canaliculatus_F_contig139.3092.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=775bp|location=Sequence derived from alignment at H-canaliculatus_F_contig139:21970..22744+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCCACACTGTTCGAGGGTGTGCCAGCAGGTCTTGATCGCACGCTTCA
GGAACGAAGTGTACGCCACGTCTGGCCAAAGCATGAAGTGCAGCACCATC
GCCATCGGGGCCATTCCGTCGCCGTCCATCCAACGCCATCGTTATCGTAT
ATGTCACGATGCCGACATACATCCGGAGGGCGAGGAGGAACGCGGGGTGG
GGTCGCGAGGGGTTGTGGATCAGGGTTGCTCAGTACTCAGTAGAACCGGT
GGTGCCCTTTAGCCTGTACAGCAGTGTGTCCGCATCCAGTAGTGTTGGAA
TAAGATGCAAACACCAACAGCGGCAACGGAGCCAAGCGGAACTCACATCA
GCGGATTTTTATCCATACAGCAGTATCAGAAGAGAGGCAAGTGACCAACA
CTGGCTCATTAGACCAAGAGGCTTTCAGAACGTGAGCTGGTACCAGAGTT
TCCAGAAATCCATTTTCTCTTGTGCACGCACCATCGACCGACTGACTGCA
CGAAGGGTACCTTCCCGCTATTCCTATTTTTCTTTCGAAGTACAAAAACA
TCGAACCATCCGACTTTTCGGACAACTCGCAAGCAAGCCCCCGCGACCTG
AATTTGGGTGCGAGTAAGTCGCACTCCGCGTTGGAGATATCGGCGGTATC
ACTCAAACCAAAGGACCTTACCTCAAGAAGTCAGCTACTCTCACGGCATG
CCATGGTATTTTTGAGTTTGCACGTTTTTTCAGATTTGAAATCAGGTGCT
GAAAGCAGACCTCCCGAGTTCTTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig139:21970..22744+

>mRNA_H-canaliculatus_F_contig139.3092.1 ID=mRNA_H-canaliculatus_F_contig139.3092.1|Name=mRNA_H-canaliculatus_F_contig139.3092.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig139:21970..22744+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGACATACATCCGGAGGGCGAGGAGGAACGCGGGGTGGGGTCGCGA
GGGGTTGTGGATCAGGGTTGCTCAGTACTCAGTAGAACCGGTGGTGCCCT
TTAGCCTGTACAGCAGTGTGTCCGCATCCAGTAGTGTTGGAATAAGATGC
AAACACCAACAGCGGCAACGGAGCCAAGCGGAACTCACATCAGCGGATTT
TTATCCATACAGCAGTATCAGAAGAGAGGCAAGTGACCAACACTGGCTCA
TTAGACCAAGAGGCTTTCAGAACGTGAGCTGGTACCAGAGTTTCCAGAAA
TCCATTTTCTCTTGTGCACGCACCATCGACCGACTGACTGCACGAAGGGT
ACCTTCCCGCTATTCCTATTTTTCTTTCGAAGTACAAAAACATCGAACCA
TCCGACTTTTCGGACAACTCGCAAGCAAGCCCCCGCGACCTGAATTTGGG
TGCGAGTAAATGCCGACATACATCCGGAGGGCGAGGAGGAACGCGGGGTG
GGGTCGCGAGGGGTTGTGGATCAGGGTTGCTCAGTACTCAGTAGAACCGG
TGGTGCCCTTTAGCCTGTACAGCAGTGTGTCCGCATCCAGTAGTGTTGGA
ATAAGATGCAAACACCAACAGCGGCAACGGAGCCAAGCGGAACTCACATC
AGCGGATTTTTATCCATACAGCAGTATCAGAAGAGAGGCAAGTGACCAAC
ACTGGCTCATTAGACCAAGAGGCTTTCAGAACGTGAGCTGGTACCAGAGT
TTCCAGAAATCCATTTTCTCTTGTGCACGCACCATCGACCGACTGACTGC
ACGAAGGGTACCTTCCCGCTATTCCTATTTTTCTTTCGAAGTACAAAAAC
ATCGAACCATCCGACTTTTCGGACAACTCGCAAGCAAGCCCCCGCGACCT
GAATTTGGGTGCGAGTAA
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