mRNA_H-canaliculatus_F_contig139.3096.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig139.3096.1
Unique NamemRNA_H-canaliculatus_F_contig139.3096.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig139.3096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig139contigH-canaliculatus_F_contig139:54714..55149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size413
Cds size240
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig139.3096.1prot_H-canaliculatus_F_contig139.3096.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig139 54714..54976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.1087403-CDS-H-canaliculatus_F_contig139:54713..547931622929133.1087403-CDS-H-canaliculatus_F_contig139:54713..54793Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 54714..54793 +
1696845689.851679-CDS-H-canaliculatus_F_contig139:54713..547931696845689.851679-CDS-H-canaliculatus_F_contig139:54713..54793Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 54714..54793 +
1622929133.1219072-CDS-H-canaliculatus_F_contig139:54816..549761622929133.1219072-CDS-H-canaliculatus_F_contig139:54816..54976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 54817..54976 +
1696845689.8609695-CDS-H-canaliculatus_F_contig139:54816..549761696845689.8609695-CDS-H-canaliculatus_F_contig139:54816..54976Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 54817..54976 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.1488256-UTR-H-canaliculatus_F_contig139:54976..551491622929133.1488256-UTR-H-canaliculatus_F_contig139:54976..55149Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 54977..55149 +
1696845689.8721337-UTR-H-canaliculatus_F_contig139:54976..551491696845689.8721337-UTR-H-canaliculatus_F_contig139:54976..55149Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 54977..55149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig139.3096.1

>prot_H-canaliculatus_F_contig139.3096.1 ID=prot_H-canaliculatus_F_contig139.3096.1|Name=mRNA_H-canaliculatus_F_contig139.3096.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=80bp
EDDDADDETTSWGPSRRLDGGVQVGGDRCVYGFCFLQWFVSRIYCLWHVS
SSSSAAAPALILYSYRLCRRYCRCDGCGN*
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mRNA from alignment at H-canaliculatus_F_contig139:54714..55149+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig139.3096.1 ID=mRNA_H-canaliculatus_F_contig139.3096.1|Name=mRNA_H-canaliculatus_F_contig139.3096.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=436bp|location=Sequence derived from alignment at H-canaliculatus_F_contig139:54714..55149+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGACGATGATGCCGATGATGAGACGACAAGCTGGGGCCCGTCGCGTCG
TCTTGACGGCGGCGTTCAGGTGGGTGGTGATCGGATGTAAGGCGAAAATA
TGGTCGTTGCGTGTACGGCTTTTGCTTTTTGCAATGGTTTGTGTCGCGGA
TTTATTGCCTGTGGCATGTGAGCTCCTCTAGCTCAGCTGCTGCGCCGGCA
CTCATTTTGTACTCTTACCGCCTTTGCCGACGCTACTGCCGCTGTGATGG
CTGTGGTAATTAGCTCTCTACCGCGTCACGTTCTCTGTTGGACTGGCAGC
TGGCTCTGCGTGTGGATCAGTGTTGTGTGTGTCGTCTTTCATCTCGGATC
TCATCGCGAGACCCTCCCCATACAAGCAAGCTAGTCTCTTCTGTTCCCCC
ACGGCTGGCGCTCAACAATGGCCCACATGATGATGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig139:54714..55149+

>mRNA_H-canaliculatus_F_contig139.3096.1 ID=mRNA_H-canaliculatus_F_contig139.3096.1|Name=mRNA_H-canaliculatus_F_contig139.3096.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=480bp|location=Sequence derived from alignment at H-canaliculatus_F_contig139:54714..55149+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGACGATGATGCCGATGATGAGACGACAAGCTGGGGCCCGTCGCGTCG
TCTTGACGGCGGCGTTCAGGTGGGTGGTGAGAGGACGATGATGCCGATGA
TGAGACGACAAGCTGGGGCCCGTCGCGTCGTCTTGACGGCGGCGTTCAGG
TGGGTGGTGATCGTTGCGTGTACGGCTTTTGCTTTTTGCAATGGTTTGTG
TCGCGGATTTATTGCCTGTGGCATGTGAGCTCCTCTAGCTCAGCTGCTGC
GCCGGCACTCATTTTGTACTCTTACCGCCTTTGCCGACGCTACTGCCGCT
GTGATGGCTGTGGTAATTAGTCGTTGCGTGTACGGCTTTTGCTTTTTGCA
ATGGTTTGTGTCGCGGATTTATTGCCTGTGGCATGTGAGCTCCTCTAGCT
CAGCTGCTGCGCCGGCACTCATTTTGTACTCTTACCGCCTTTGCCGACGC
TACTGCCGCTGTGATGGCTGTGGTAATTAG
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