mRNA_H-canaliculatus_F_contig139.3094.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig139.3094.1
Unique NamemRNA_H-canaliculatus_F_contig139.3094.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig139.3094.1 vs. uniprot
Match: D8LJG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG1_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.410e-34
Identity = 65/100 (65.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:  184 AVKRVDEEMTGEGLLLTQVTSSDKKIIRRVFVNVPNGILTWEKDAIFGTKWERVKLPEARVMCTSSLVKIGVVGKKGFFTFEACDEGEASAVCDALVAHA 483
            AVKRVD ++T  GLLLTQV   ++K++RR+ +    G+L WE DA+FG KWE+VKLPEARVM T SLVKIGVVGK  FF+FEACD+ EA AVC  LVAHA
Sbjct:  159 AVKRVDGDLTDGGLLLTQVMRGNRKVVRRLELEKKKGVLKWEVDALFGMKWEKVKLPEARVMSTGSLVKIGVVGKSEFFSFEACDDLEAGAVCKTLVAHA 258
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BLAST of mRNA_H-canaliculatus_F_contig139.3094.1 vs. uniprot
Match: A0A6H5KED6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 4.410e-33
Identity = 63/101 (62.38%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:  184 AVKRVDEEMTGEGLLLTQVTSSDKKIIRRVFVNVPNGILTWEKDAIFGTKWERVKLPEARVMCTSSLVKIGVVGKKGFFTFEACDEGEASAVCDALVAHAK 486
            AVKRVD ++T  GLLLTQVT  +++++RR+ +    G+L WE DA+FG KWE+VKLPEARVM   +LVKIGVVGK  FF+F+ACD+ EA AVC ALVA AK
Sbjct:  145 AVKRVDGDLTDGGLLLTQVTWGNREVVRRLELEEKKGVLKWEVDALFGMKWEKVKLPEARVMSDGNLVKIGVVGKSDFFSFKACDDVEAGAVCKALVARAK 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig139.3094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJG1_ECTSI4.410e-3465.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KED6_9PHAE4.410e-3362.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig139contigH-canaliculatus_F_contig139:36963..41988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009950.1
Exons4
Model size652
Cds size648
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig139.3094.1prot_H-canaliculatus_F_contig139.3094.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig139 36965..41988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.0024722-CDS-H-canaliculatus_F_contig139:36964..372491622929133.0024722-CDS-H-canaliculatus_F_contig139:36964..37249Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 36965..37249 -
1696845689.8002982-CDS-H-canaliculatus_F_contig139:36964..372491696845689.8002982-CDS-H-canaliculatus_F_contig139:36964..37249Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 36965..37249 -
1622929133.0321743-CDS-H-canaliculatus_F_contig139:37837..379731622929133.0321743-CDS-H-canaliculatus_F_contig139:37837..37973Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 37838..37973 -
1696845689.8113453-CDS-H-canaliculatus_F_contig139:37837..379731696845689.8113453-CDS-H-canaliculatus_F_contig139:37837..37973Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 37838..37973 -
1622929133.0478663-CDS-H-canaliculatus_F_contig139:38825..389661622929133.0478663-CDS-H-canaliculatus_F_contig139:38825..38966Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 38826..38966 -
1696845689.8207953-CDS-H-canaliculatus_F_contig139:38825..389661696845689.8207953-CDS-H-canaliculatus_F_contig139:38825..38966Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 38826..38966 -
1622929133.0656219-CDS-H-canaliculatus_F_contig139:41902..419881622929133.0656219-CDS-H-canaliculatus_F_contig139:41902..41988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 41903..41988 -
1696845689.8377533-CDS-H-canaliculatus_F_contig139:41902..419881696845689.8377533-CDS-H-canaliculatus_F_contig139:41902..41988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 41903..41988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig139.3094.1

>prot_H-canaliculatus_F_contig139.3094.1 ID=prot_H-canaliculatus_F_contig139.3094.1|Name=mRNA_H-canaliculatus_F_contig139.3094.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=216bp
EEAETAPEPEAAEEAPTEVPPAVEEAPLAKQEDADVTEKEPAPQEEAPTS
GSSDVLDPHAAAVKRVDEEMTGEGLLLTQVTSSDKKIIRRVFVNVPNGIL
TWEKDAIFGTKWERVKLPEARVMCTSSLVKIGVVGKKGFFTFEACDEGEA
SAVCDALVAHAKSEGQQEGQEETATTPPDQKEGDKDGGEGGGGAETGDGE
AGEVSSPSPKHDEAAA
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mRNA from alignment at H-canaliculatus_F_contig139:36963..41988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig139.3094.1 ID=mRNA_H-canaliculatus_F_contig139.3094.1|Name=mRNA_H-canaliculatus_F_contig139.3094.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig139:36963..41988- (Hapterophycus canaliculatus Oshoro5f female)
GAGGAAGCTGAGACAGCTCCCGAGCCGGAGGCAGCGGAGGAGGCTCCCAC
CGAGGTGCCGCCCGCGGTGGAAGAGGCGCCCCTCGCGTAAGTCCTCTCGC
TGTCGTCCGGGTTTCGCGTAGGTCTGAAGCCGTCACGACTGACCAACCAG
CAGCGAACAGCGAGCACCCTGGCAGGCTCCTTGTCTGTCGATGTGCTGTC
CTTTGTTTTAGTTTGTGCCAGCGGGGGTGTAGTGGGTGCGAAATGCTGTT
CACGAAGGAGAATATCCCGTGGACATTGCGAAAAGTGTGTTCATGGCGTT
AACGTTCTTCTGATGTCGGTGGGATAGGTTGAACATGCTTCACATCTGAC
ATTAAGTGTATGCGATTTTTCTAGCATCCGAGCGTTCCGAATTCGAGAGT
TTGTGTCTCGGAGGTGTATCAGTACATCCACCTCCACGGGTTACCCTTCT
CAGTTGAACATTTTCAGCCCGCTTTTCTTGACTATCGCCTGTGAGGTGCG
CGGCCCTTGGCGAAGACTACCCGCCCCGCGGAGCCCGCCAGCGGGATCAT
CACGCCCCTCTCCGTCAAAATCTTGTTGTGGCTGCACCCGAAACACGAGG
AGCAATCTCCAGAGGCGCGCGCTGCTTCCGTGCATGCTACGTGCTGCTTT
GCCTCGCTGCGACCGATTCTTATCCGAGAATCAGTCAGATCCACCGGTTA
TCCCACGTCTCATCGCATGGATTGAGTTCTTCGAAGGCCTGCACGGATGG
GTTGGCCCACCTTTCTTCGAGTTTTATACGTAGTACGTGAACGAGAAAGG
TGTGAAACGGCGCGTTCGTTCTTGGTCCTCTGGATCCATGCGCACAGATG
TAGGCAGCCTCCCCTCCTACGGCTCTCATTGGCGCCTCGGAGAACTACTC
GTGCAGCGGGATCCACCACCGAGGTTGAGCATGTTCCTTGGCGCTGGCTG
TGGTAGGTACACGATAAGAGACCCTCGGTTGCGACCAAGAGCCCACGACT
AAAGCGCGTCTCGAAAGTCTTGCTTTCGCCATGTAAGCCGACAACTGAAG
TACATCGGTTAAGATACGCTTGTGATACGCCCCTCGGATTCGTTTCGGCG
GCAGCAAAGTCTTCCCGCACCTCTTCGAAACGGAACCACCAAGCAGTTTT
GTGGAGGTGCTCGTTCGGATCTGAAGTGGTGCAAAAGAATCGACCCAGTG
CGGAGGGCCTGAACCAAAAATGTAAGCTTTCTGCAGGAAATCGAACACAA
GTACTCTGGAGTGTTTATTTTGTCCGTTTGACTGGAGCAGCTGCCCGCCG
TCACCCTTTTCGAAATCCGCGTGAACACCCGCCACATCAAGAATGATACT
CCGCTTTTTCTTACGAAGTTCAATTTCCCGTTCTTGAACCTCGAGGAGGC
CCGGTGCAACTTCTGCAGCGGCCGAGATACACGGCGCGCTTCAATTTCGC
GAATCATTACAAGATTCCGTGCTCGATCTTCATGAAAAATCACGTTTCTT
TAGTGATGGTACCGCTGTTCTCGACGACTCTAGGCTGTACGCTCATCGTG
TCCCGCAATCTCAGTGTCTCGCACGAGATCAGTGTCAAAACTTCATCCAC
ATTTCCTGCTGCGATTGCGTGTGCTCGTCTTCACACCAGTGTTGGCAATT
CTAGGGGCAGTGGAGCCGAGGTACCGAGGCTGACGGAACGTCCCGAGGCT
ATCACGAAGCCTTCGAAATTCGGTTGCCTGGCAGCTTCTTGGGCTACGTT
TGTCTCAACACTCAGATAACGTCTCCGCCGGCCCCGCGGCGCTGTTCGTG
GTGAACCATTCCCCAATTCTGTCAAGTCTACACGAAGCACGTGCATCAGG
AGGCTGACCCAGCCCCGACCTTTGGAGATGACCCACGTGTTCTTAAGTTC
CAAAGTAAAGAGCAATGGGTCTAGATGTCTAGATGAACCCTCGCCCCTCG
ATACTTTTGTTCCTCCGGAGGTACTCGAATTTGAGCTTCATCGCACCTTT
CTCTAGGGCTGCGGCCGTCCCCGAAGGTAGCAGATAGCTGGCTTGCCCGC
AATTAGAAGGTGCTTCGGCTAAAATGTCAGCCCTCGGCGAACGGAGACTG
TCCTCTTGCCTCACCCGGCGGAAGACGCGTAGGTGAGCTGCAGGAGCCCA
GGGCTTATCTGCTTATGTTCAATGTTTCTGTGCCAACGCGGGAGCACGGC
ATGTAACTGTCCCGGCGAGGGAGAAAAGAGAGACGCGAGAAAAATACGAG
TCCCCAGGAGGACTTCCTCTCGACCTCAATCCGACCTTCAGTTGAGGTTC
ACGGCCCGGCGTCCTTCTTACCTTTTTATCGACCCCTTCCACAACTAGGG
GATCAAAATACCTCCTGATAGTCCCTACCTCGAAGGTTGTATCCCGTTGA
TGGCCTTTGTTTTCCTCCGTCGCCGGAGTGTTCGATGTTCGGATGTCCGC
CCCGACGGCCAACGGATGGCCGTACGGTGTCGACGCGAAGGCGCATGTGT
TAGCGGTGACTGGCCGGTAAATCTCAACGTGAGCACAAATTGGGTAGCCC
GCCCCGCTGTACCTGTAGGAGCCAAGGTAACTCATCTCACAGATCACAAA
CTCTCGGAGCGGCGTAGAATGAGCCACTCTAGGTTCACTTCCATCGAAGA
GACTCGACACCCGACTACCGGGAGGCGTGTGTTGGCATTGACCCCGAAGA
AGCTGCCGAGGGTTGTCGCATGGCACGCGCTGTTTTCCGTGATCCAGTGT
CCACTTTCTCTACAGAACGGCGTCAAGCGCGGCATGCATATTCTATGTAG
GAGGAGTGGAAAACGCCGCCTTCACAGCGGTTTTGACGCAAGCCCATCCC
TCACTTCAAATGTGACCATTTGGGAGCGCGGTTGTCTTGCGTCGTGAACG
AAGCGAGAAATTTCGGATTTTTCGTTGCCATGTTCCTCGCCCCCGAAGTA
GTAGGGATGGCCCCATCTTTTGTGACCGCCGGTATGTATCTTTCCCCGTC
TCCTCTTGCGATGAAATCACAGCAAGCAGGAGGACGCCGACGTGACCGAG
AAGGAACCGGCGCCGCAAGAGGAGGCACCAACCTCCGGCAGCAGCGACGT
GCTCGACCCCCATGCGGCGGCCGTGAAGCGTGTGGATGAGGAGATGACGG
GTGAAGGCCTCCTGTGAGTGCGGGCTGCTGTTTTAGCATTACGTTTTATT
ACCACAAGAGTCGACAGCATAAGAGGACCACCGTTCGAGACACGGCTCGG
TGGATTGTTTCTCGCGTCATCGGGCGCATTTAATTTCCTGTCCGGAAGAA
AGGAAAAAGGGATTTTTTTCGTTCTTCATATTCGTTGCGGTGCACTTACT
GTCGTGCGCGAGAGACGGGCGGGCAAGGATCCACTCTCCGCGCTCGGCTT
CGAAGAGCGGTAGGTAGCCGTTCCCATATTTTCGACCCTTGAGCGTTGGG
ATGTTCTCGGTCTTGTCTTGTTGGATCCGATGTGATTGAAAGCATCTTGC
TTTCCTCGCCTGATGAGGGGGGGGCTTGAGGATGCACGGGCTAGTCCACA
TCCGCAGGAATGCATCTGCCGCAGAATTGGTAGCACCAAGAGGTGTGCGT
AGCGCGACCATTTGGCCCGAGTCGTACAACCTAGTTCATGACGGACCCAG
GGTACAACGTGCGAAGTCAATCCTTTCATCCTTCCGCCTTATGCGGATTG
TCCGCCGCTATTGTGCGACTCCGATCATCGTATCGCTGGCCGTATGCTAA
CCCACGCCTCCCAAGCCCGAAATCAAAAGGAATCCGTCTGCGACAGCTTT
AGATACGTCTTCGTGTCCGCTAACCCAGTCACTCAAAGAGTAGATTTGAT
TGGCCCGTCTCTCAATCCAGGATTTGCCCAGATAGTTGTTCGGGGGGGAG
AGTTCGGAGGGGTTGAGCGGTTGATTTTCGGACGGAGGAGAGTGACGACC
AAGTTCATCCCCGGTGGCTGGGTGGCCGTCGTGCGGCTAAAGCTGCTCTT
CGTGCCAACGAACAGTCTTACCCAGGTGACGAGCTCAGACAAGAAGATTA
TCCGGAGGGTGTTCGTGAACGTCCCTAACGGGATCCTGACGTGGGAGAAG
GATGCCATCTTCGGTACGAAATGGGAAAGGGTCAAGCTCCCCGAAGCGAG
GGTGAGAGGAAAAAAAATGAAAAAATAGCGTCGGGCGTGGTGGCTGTCAT
TTTCTTGGCAACGGCCGTGTTCTGGAGTTGCTTGCCGGAACTTGACATGG
AGAAAAAGAGCGTTCTTCGTGTGTTCAACGGTGACATTTTCCTTGACAAC
TATGTCCCGACGTTGCGCGCAGTAGGTAGAGAAGGAGGACATATTCCCGC
CGCAAACACCGTCCAGTCCACCAGAACCCCCGAGCGCGAGCGTAGGCACG
ACGCAACATCTTCGGGCGCACGCCCTTTTCTTGTAACCTTCCTTTTCTCG
CCGAGAGCCTCGCTTCTCTTTGCCTCTCCGCGGCCTCCGTAAGCACCAAG
GCCGTTCCTCGTGCTAGTGCATTTGACGATTTGCGTTGCATGCTGCGAAA
CGTCGATCGATCGGTACGCTACTCGCCGCGTGCCAGCCACCAGCATGTCT
TATTGATGGCGCATTTTTTTATCCCAGCACTTCTCACAAACCCAACCAAA
AGGACTCGAATAACACTCCGTCTTCCCCCTGACGGCGTGTGTTCGCTGTC
CCGTCCCCCCGACGTACACGTGAAACGACAAACGAGAAGGTGATGTGCAC
GAGCAGCCTGGTCAAGATCGGGGTCGTCGGCAAGAAGGGCTTCTTCACGT
TCGAGGCGTGCGACGAGGGCGAGGCTTCGGCCGTCTGCGACGCCCTTGTA
GCTCACGCCAAGAGCGAGGGGCAGCAGGAAGGTCAGGAAGAGACCGCCAC
GACGCCCCCCGACCAGAAGGAAGGAGACAAGGACGGAGGAGAAGGGGGAG
GAGGAGCTGAAACGGGGGACGGGGAGGCGGGAGAAGTCTCGTCGCCCTCC
CCCAAACACGACGAAGCTGCTGCGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig139:36963..41988-

>mRNA_H-canaliculatus_F_contig139.3094.1 ID=mRNA_H-canaliculatus_F_contig139.3094.1|Name=mRNA_H-canaliculatus_F_contig139.3094.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1296bp|location=Sequence derived from alignment at H-canaliculatus_F_contig139:36963..41988- (Hapterophycus canaliculatus Oshoro5f female)
GAGGAAGCTGAGACAGCTCCCGAGCCGGAGGCAGCGGAGGAGGCTCCCAC
CGAGGTGCCGCCCGCGGTGGAAGAGGCGCCCCTCGCGAGGAAGCTGAGAC
AGCTCCCGAGCCGGAGGCAGCGGAGGAGGCTCCCACCGAGGTGCCGCCCG
CGGTGGAAGAGGCGCCCCTCGCCAAGCAGGAGGACGCCGACGTGACCGAG
AAGGAACCGGCGCCGCAAGAGGAGGCACCAACCTCCGGCAGCAGCGACGT
GCTCGACCCCCATGCGGCGGCCGTGAAGCGTGTGGATGAGGAGATGACGG
GTGAAGGCCTCCTCAAGCAGGAGGACGCCGACGTGACCGAGAAGGAACCG
GCGCCGCAAGAGGAGGCACCAACCTCCGGCAGCAGCGACGTGCTCGACCC
CCATGCGGCGGCCGTGAAGCGTGTGGATGAGGAGATGACGGGTGAAGGCC
TCCTTCTTACCCAGGTGACGAGCTCAGACAAGAAGATTATCCGGAGGGTG
TTCGTGAACGTCCCTAACGGGATCCTGACGTGGGAGAAGGATGCCATCTT
CGGTACGAAATGGGAAAGGGTCAAGCTCCCCGAAGCGAGGTCTTACCCAG
GTGACGAGCTCAGACAAGAAGATTATCCGGAGGGTGTTCGTGAACGTCCC
TAACGGGATCCTGACGTGGGAGAAGGATGCCATCTTCGGTACGAAATGGG
AAAGGGTCAAGCTCCCCGAAGCGAGGGTGATGTGCACGAGCAGCCTGGTC
AAGATCGGGGTCGTCGGCAAGAAGGGCTTCTTCACGTTCGAGGCGTGCGA
CGAGGGCGAGGCTTCGGCCGTCTGCGACGCCCTTGTAGCTCACGCCAAGA
GCGAGGGGCAGCAGGAAGGTCAGGAAGAGACCGCCACGACGCCCCCCGAC
CAGAAGGAAGGAGACAAGGACGGAGGAGAAGGGGGAGGAGGAGCTGAAAC
GGGGGACGGGGAGGCGGGAGAAGTCTCGTCGCCCTCCCCCAAACACGACG
AAGCTGCTGCGGTGATGTGCACGAGCAGCCTGGTCAAGATCGGGGTCGTC
GGCAAGAAGGGCTTCTTCACGTTCGAGGCGTGCGACGAGGGCGAGGCTTC
GGCCGTCTGCGACGCCCTTGTAGCTCACGCCAAGAGCGAGGGGCAGCAGG
AAGGTCAGGAAGAGACCGCCACGACGCCCCCCGACCAGAAGGAAGGAGAC
AAGGACGGAGGAGAAGGGGGAGGAGGAGCTGAAACGGGGGACGGGGAGGC
GGGAGAAGTCTCGTCGCCCTCCCCCAAACACGACGAAGCTGCTGCG
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