mRNA_H-canaliculatus_F_contig13891.3087.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13891.3087.1
Unique NamemRNA_H-canaliculatus_F_contig13891.3087.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13891.3087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13891contigH-canaliculatus_F_contig13891:1133..1671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size534
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.645414-UTR-H-canaliculatus_F_contig13891:1132..11371622929132.645414-UTR-H-canaliculatus_F_contig13891:1132..1137Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13891 1133..1137 +
1696845689.7025564-UTR-H-canaliculatus_F_contig13891:1132..11371696845689.7025564-UTR-H-canaliculatus_F_contig13891:1132..1137Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13891 1133..1137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.6585321-CDS-H-canaliculatus_F_contig13891:1137..16711622929132.6585321-CDS-H-canaliculatus_F_contig13891:1137..1671Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13891 1138..1671 +
1696845689.7157853-CDS-H-canaliculatus_F_contig13891:1137..16711696845689.7157853-CDS-H-canaliculatus_F_contig13891:1137..1671Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13891 1138..1671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13891.3087.1prot_H-canaliculatus_F_contig13891.3087.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13891 1138..1671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13891.3087.1

>prot_H-canaliculatus_F_contig13891.3087.1 ID=prot_H-canaliculatus_F_contig13891.3087.1|Name=mRNA_H-canaliculatus_F_contig13891.3087.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=178bp
MCTKHTDRTSTAARRRFFRRHAGRIVGEQTGVDDDSRARRDTNNNRMRFS
EEIEPTGRDGSLELPTPLRPSQSRFVERNRECVRQIMPTETKRRKGGSRD
TKKVLISPGQNERSGRWRVGQRVLLIRDITRKRDTRVGTASRRDHSLFAL
RHDDARRRRRVSNSTHSSTNKTRRNAPD
back to top

mRNA from alignment at H-canaliculatus_F_contig13891:1133..1671+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13891.3087.1 ID=mRNA_H-canaliculatus_F_contig13891.3087.1|Name=mRNA_H-canaliculatus_F_contig13891.3087.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=539bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13891:1133..1671+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGGATGTGCACGAAGCACACCGATCGTACCAGCACGGCTGCGCGTCGG
CGATTTTTTCGGAGGCATGCGGGAAGAATAGTCGGTGAGCAAACGGGGGT
AGATGACGATTCACGCGCGCGGCGTGACACGAACAACAATCGGATGCGCT
TTTCGGAGGAGATCGAGCCAACGGGACGTGACGGAAGCCTCGAGCTTCCG
ACACCTCTCCGCCCGTCGCAGAGCCGGTTCGTCGAGAGGAACAGAGAGTG
CGTGCGGCAGATCATGCCGACCGAGACAAAGCGCCGCAAAGGCGGCTCGA
GGGACACGAAAAAAGTGCTGATATCACCAGGGCAAAACGAGCGATCAGGG
AGGTGGCGAGTGGGTCAGCGCGTTCTCCTCATTCGAGACATCACACGGAA
ACGAGACACCCGCGTAGGTACCGCCAGTCGCCGCGATCACTCATTATTCG
CTCTGAGGCACGACGACGCCCGGCGCCGACGACGAGTGTCCAACTCAACA
CACTCCTCCACCAACAAAACACGGAGAAATGCTCCGGAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13891:1133..1671+

>mRNA_H-canaliculatus_F_contig13891.3087.1 ID=mRNA_H-canaliculatus_F_contig13891.3087.1|Name=mRNA_H-canaliculatus_F_contig13891.3087.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1068bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13891:1133..1671+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGCACGAAGCACACCGATCGTACCAGCACGGCTGCGCGTCGGCGATT
TTTTCGGAGGCATGCGGGAAGAATAGTCGGTGAGCAAACGGGGGTAGATG
ACGATTCACGCGCGCGGCGTGACACGAACAACAATCGGATGCGCTTTTCG
GAGGAGATCGAGCCAACGGGACGTGACGGAAGCCTCGAGCTTCCGACACC
TCTCCGCCCGTCGCAGAGCCGGTTCGTCGAGAGGAACAGAGAGTGCGTGC
GGCAGATCATGCCGACCGAGACAAAGCGCCGCAAAGGCGGCTCGAGGGAC
ACGAAAAAAGTGCTGATATCACCAGGGCAAAACGAGCGATCAGGGAGGTG
GCGAGTGGGTCAGCGCGTTCTCCTCATTCGAGACATCACACGGAAACGAG
ACACCCGCGTAGGTACCGCCAGTCGCCGCGATCACTCATTATTCGCTCTG
AGGCACGACGACGCCCGGCGCCGACGACGAGTGTCCAACTCAACACACTC
CTCCACCAACAAAACACGGAGAAATGCTCCGGACATGTGCACGAAGCACA
CCGATCGTACCAGCACGGCTGCGCGTCGGCGATTTTTTCGGAGGCATGCG
GGAAGAATAGTCGGTGAGCAAACGGGGGTAGATGACGATTCACGCGCGCG
GCGTGACACGAACAACAATCGGATGCGCTTTTCGGAGGAGATCGAGCCAA
CGGGACGTGACGGAAGCCTCGAGCTTCCGACACCTCTCCGCCCGTCGCAG
AGCCGGTTCGTCGAGAGGAACAGAGAGTGCGTGCGGCAGATCATGCCGAC
CGAGACAAAGCGCCGCAAAGGCGGCTCGAGGGACACGAAAAAAGTGCTGA
TATCACCAGGGCAAAACGAGCGATCAGGGAGGTGGCGAGTGGGTCAGCGC
GTTCTCCTCATTCGAGACATCACACGGAAACGAGACACCCGCGTAGGTAC
CGCCAGTCGCCGCGATCACTCATTATTCGCTCTGAGGCACGACGACGCCC
GGCGCCGACGACGAGTGTCCAACTCAACACACTCCTCCACCAACAAAACA
CGGAGAAATGCTCCGGAC
back to top